mRNA_C-linearis_contig88.16384.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16384.1
Unique NamemRNA_C-linearis_contig88.16384.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: D7G884_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G884_ECTSI)

HSP 1 Score: 608 bits (1568), Expect = 8.250e-209
Identity = 383/657 (58.30%), Postives = 425/657 (64.69%), Query Frame = 1 
Query:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKKASKRLPFSLACKKSAEERHRREMLGEADPIEGGAAASGGPDEASSDVAGMLRSAMDDEDSTIEDKEQGQAQEKSATNGVATARP-TRPSSAPPARGRRPQ----LNTGNNESSPQTSAXXXXXXXXXXXXVINGEEDAGV---DGDSFGKDSHDLEGFDDLEGEAAEAFSYDHYPAAGSPEEPEWFHTPWCGTNSGDIPVLDKVFEKAPVGGGDAPTMTQRVPLVPMSAPAALSSRGVSGKSA---------------GGEDTSSFVEHS-DTGGSSTKVEEITSAHPPRRERGHPDGGDGKAGVTIELSPVARGAGDXXXXXXXXXXXXXXXXXGEDGRGSARRSPRRASGGVSSPRVIAGGGELKRYDWGGADVVPTKPSLVAASKIPTGTRADKQRFRNARRKDANKK 1899
            MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEE L  LA+QHR KL++L+ EL+EDE KV  SFERERA +L KQEKQFVQLVDDAIKRAIGKSK      KYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRL+ESAAWEEKAAELDA+HLD WREEVAASLTASAWGGSSSALDQLA++HQREISRMETAQAN WTLMLMRH+TARRNCHN IMVE+KK                                             DV GMLR+ ++DE S   + E  +AQ    + G A  RP TRPSSAPPARG+RPQ        NN++  +T A               G  D GV   D DSFGKDSHDL GFD+LEGEA + FSYD YPAAGSPEEPEW HTPWCGTNSGDIPVLDKV +K  +     P +   +P    SAP + S+  V G +A                GED     EH  D G   +  E       P    G    GD  A V+  LS    GA                     DG GS R SP     G +SPR +AGGGEL+RY+W GAD  PTKPSL+  S+IPTG RADKQRFRNA+R+DAN+K
Sbjct:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEELAALAIQHREKLASLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQLVDDAIKRAIGKSK------KYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDANHLDSWREEVAASLTASAWGGSSSALDQLATEHQREISRMETAQANGWTLMLMRHQTARRNCHNVIMVERKK---------------------------------------------DVEGMLRNVIEDEGSATGEAEGKEAQ---PSGGTAAGRPPTRPSSAPPARGKRPQPAAATTKNNNQNLSETVAAPPSATEKAGEGENVGAADEGVHVDDDDSFGKDSHDLRGFDELEGEAWKKFSYDDYPAAGSPEEPEWIHTPWCGTNSGDIPVLDKVSDKKVLDSDGTPMVQLVLPASTASAPPSSSAGRVDGNTATQPVVRGGGASEGFGDGEDKGVIAEHKRDVGSPRSGAEGGADKGRPCSATGELFTGDAAAAVS-PLSFAGEGAERDSQV---------------DGGGSGR-SPGSVGDGFTSPRALAGGGELRRYNWLGADAAPTKPSLLTTSRIPTGNRADKQRFRNAKRQDANRK 586
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A836CD74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD74_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.280e-84
Identity = 149/243 (61.32%), Postives = 182/243 (74.90%), Query Frame = 1 
Query:   10 MAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKK 738
            M+KLKKLQKERLIVARLGFP+KAMEIDE ++KIR DL++ER   D R+L   L  L   H A+  AL+  + E+E ++RG F  E+  +  K + +F+ LV  A KRAIG+SKSCSC KKYLC HNKTAS+NTRRPKK+VIH+R+NA RL+HGGRLEE+ AWEEKAAELDA HL++WRE VA SL ASAWGGSSSALD L  +HQ E+ ++E  Q+N W LM M H   RRN  N + VE KK
Sbjct:   77 MSKLKKLQKERLIVARLGFPEKAMEIDEMVQKIRDDLKTERAAEDERVLMVELERLQEAHAARAEALEQRIGEEEQQMRGKFCEEQRRLRKKHDSEFLDLVTAATKRAIGRSKSCSCTKKYLCTHNKTASYNTRRPKKDVIHYRRNASRLKHGGRLEEAKAWEEKAAELDARHLEQWREHVARSLAASAWGGSSSALDHLGERHQHELEQLEVGQSNRWRLMTMHHAVLRRNLGNTMAVEVKK 319
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A6C0BWQ3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BWQ3_9ZZZZ)

HSP 1 Score: 150 bits (378), Expect = 3.510e-35
Identity = 84/248 (33.87%), Postives = 152/248 (61.29%), Query Frame = 1 
Query:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRN--CHNAIMVEQKK 738
            +  ++ LKKLQKERLI++RLGF +KA  +D+ IE +R   +  R+  + +++ E L  L  ++  K   LD+ ++++ ++            + K   +F++++++A +++IGK KSC+C   YLCHHNKT+S+N R+PK  VI +RKN+KRL+ GGR E++   EEKA E+D +   +W++ +A S+  S W  +   +D+    H++E+  ME  + +E+     + R +RR    HN ++ ++++
Sbjct:   70 LNAISALKKLQKERLIISRLGFAEKAYALDKQIEVMREKAKVVRKAEEEKLMAEMLETLHKKNERKQQRLDAVIKQEHDEXXXXXXXXXXXXIEKHRTEFLKIIENAERKSIGKIKSCNCENDYLCHHNKTSSWNIRKPKPIVILYRKNSKRLKQGGRTEDAIQIEEKADEIDYESQIEWKKNIATSIVQSPWNANEPIIDRTIENHKKELETME--KTHEFKRNAFKERCSRRKFALHNNLITDERR 315
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.910e-33
Identity = 97/276 (35.14%), Postives = 155/276 (56.16%), Query Frame = 1 
Query:   19 LKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDL-------ALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDK-WREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKKASKRLPFSLACKKSAEERHRREMLGEAD 822
            +++LQ ERL +AR+GF DKA E++  IE+ R  +  ERE+ +  IL + L+ L       A+ HR +L AL+S L  +  +  G   +E +    K  +++  L+++  +RA G   SC C K+YLC HNKTAS+NTR+P ++VI  R+NA+RLR  GR+EE+  ++ +A  +D D  DK WR  V  S+ +SAW G  S L+QL  + Q ++  +E     +  L+  +              E+KK        + C+++A +R  R++  EAD
Sbjct:   33 IRELQMERLAMARMGFLDKAKEVENVIERERVTMLKEREEREQSILSQKLSSLGKYHHAKAMGHRRRLVALESRLTRELQQFLGKCAKELSDTKDKHRREYEALIEETAQRAYGGVSSCQCRKRYLCRHNKTASYNTRKPTRDVISLRQNAERLRATGRIEEAEEFDRQAQAID-DKADKDWRTRVEQSIVSSAWSGGKSRLEQLVERQQHQLRSVEETHEAKLELVKKQQEIXXXXXXXXXXXERKKVI------MYCRRAALKRMTRDIKEEAD 301
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.260e-32
Identity = 100/283 (35.34%), Postives = 155/283 (54.77%), Query Frame = 1 
Query:   19 LKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDK-WREEV-------AASLT-------ASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKKASKRLPFSLACKKSAEERHRREMLGEAD 822
            L++LQ ERL +AR+GF DKA E++  IE  R   + ERE+ +  IL + L  L + HR +   L+++  E E + R         +  K ++++  L+++  +RA G   SC C K YLC HNKTAS+NTR+P +EVI  R+NA+RLR  GR+EE+  +E +A +LD D  DK WR  V       A S          SAW G  S L+QL  + Q  +  +E     ++ L++ +    RRN  +    E+KK +      + C+++A +R  R++  +AD
Sbjct:   79 LRELQMERLAMARMGFLDKAREVEVWIESERLKTQKEREEKEQAILAQKLGGLDISHRRRFIGLENKQGEGEAQFRAKXXXXXXELRLKHKREYDMLIEETAQRAYGGVSSCQCEKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFEIQAQDLD-DACDKQWRTRVEQRAKPYACSFLHRTSLWRTSAWSGGKSRLEQLVEKQQHTVKSLEETHEAKYELLVKQQDIQRRNLKSTFEAERKKVA------MYCRRAALKRMTRDIKEDAD 354
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.450e-25
Identity = 82/256 (32.03%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:   49 VARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFER---ERATILGKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKKASKRLPFSLACKKSAEERHRREM 807
            +AR+GF DKA E+D  +E  RA L+ ER++ D  +L++ +  L + H  + +A+ S     E ++    E+   E   +  KQ+K++  LV +   RA G   SC C   + C HNK+AS+NTR+P K+VI  R+N +RLR  GRL E+   +  A  ++    D+WR+ V  S+ +SAW G  S L+Q+  + Q  +  + +    +   +  + R  RRN  + +  E+KK        L C++ A +R  +++
Sbjct:    1 MARMGFLDKAEELDVMVEAERARLKKERDQQDQAVLDQKMNGLRMSHTRRSAAMTSA---HEARIASLLEKCATEIEDLKVKQKKEYDVLVGETATRATGGVSSCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNGQRLRASGRLAEADEVDNMAVAIEKLAEDQWRKRVEESILSSAWCGGKSRLEQMVERQQATLRALMSTHTEKLARLKQQDRLERRNLVSTLAAERKKVI------LYCRREATKRRTKDI 247
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.310e-13
Identity = 76/292 (26.03%), Postives = 124/292 (42.47%), Query Frame = 1 
Query:   82 EIDEHIEKIRADLRSEREKVDSRILEEALTDLALQHRAKLSALDSELREDENKVRGSFERE--------------------------------RATIL----------GKQEKQFVQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLEESAA--------------------------------WEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQK 735
            +ID+ I+  R  L++ERE  ++ ++   L  L L H+ +++AL++ L E+   +     +E                                 A+ L           KQ++Q+  LV +   RA G   SC+CA  Y C HNK+AS++TR+P ++VI  R+NA+RLR  GR EE+ +                                 E KAA+ +      WR  V A++ +SAW G  S L+Q+  + Q  ++ +E        L    H   RRN    +  E++
Sbjct:  191 DIDDRIDAERQRLKAEREGKEASLMVHRLAGLELAHKRRITALEARLAEELRSLAARQAQELDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASALLCSGLLVVTRAKQKRQYELLVGETATRATGGISSCTCADAYACRHNKSASYSTRKPTRDVIRLRQNAQRLRASGRQEEAESRGRRGLGGSEAPECARAAGERKCGGAHLLACEMENKAADAERAAEAAWRARVEAAIVSSAWAGGKSRLEQMVERQQAVVAALEETHGERAALARKNHGILRRNLLATLNAERR 482
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BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.010e-7
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1 
Query:  310 VDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHG---------------------GRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREI 633
            V +   RA G   SC C   + C HNK+AS+NTR+P K+VI  R+N  R RH                      GRL E+   +  A  ++    ++WR+ V  S+ +SAW G  S L+Q+  + Q  +
Sbjct:   60 VGETATRATGGVSSCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNVSRPRHSPAEPPLMWLFFVSRGQRLRASGRLAEADEVDNMAVAIEKLAEEQWRKRVEESILSSAWCGGKSRLEQMVERQQATL 188
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G884_ECTSI8.250e-20958.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD74_9STRA1.280e-8461.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0BWQ3_9ZZZZ3.510e-3533.87Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A836CAU2_9STRA2.910e-3335.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNT6_9PHAE9.260e-3235.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM25_ECTSI6.450e-2532.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9J4_9STRA1.310e-1326.03SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KND4_9PHAE1.010e-732.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:707292..712327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010640.1
Exons9
Model size2130
Cds size2130
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930687.964382-CDS-C-linearis_contig88:707291..7074141622930687.964382-CDS-C-linearis_contig88:707291..707414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 707292..707414 +
1690881197.6471708-CDS-C-linearis_contig88:707291..7074141690881197.6471708-CDS-C-linearis_contig88:707291..707414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 707292..707414 +
1622930687.978212-CDS-C-linearis_contig88:708064..7082081622930687.978212-CDS-C-linearis_contig88:708064..708208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 708065..708208 +
1690881197.673076-CDS-C-linearis_contig88:708064..7082081690881197.673076-CDS-C-linearis_contig88:708064..708208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 708065..708208 +
1622930687.9901924-CDS-C-linearis_contig88:708656..7087371622930687.9901924-CDS-C-linearis_contig88:708656..708737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 708657..708737 +
1690881197.6877997-CDS-C-linearis_contig88:708656..7087371690881197.6877997-CDS-C-linearis_contig88:708656..708737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 708657..708737 +
1622930688.0006537-CDS-C-linearis_contig88:709280..7094211622930688.0006537-CDS-C-linearis_contig88:709280..709421Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 709281..709421 +
1690881197.6991653-CDS-C-linearis_contig88:709280..7094211690881197.6991653-CDS-C-linearis_contig88:709280..709421Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 709281..709421 +
1622930688.0120306-CDS-C-linearis_contig88:709777..7098941622930688.0120306-CDS-C-linearis_contig88:709777..709894Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 709778..709894 +
1690881197.710544-CDS-C-linearis_contig88:709777..7098941690881197.710544-CDS-C-linearis_contig88:709777..709894Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 709778..709894 +
1622930688.02489-CDS-C-linearis_contig88:710092..7102491622930688.02489-CDS-C-linearis_contig88:710092..710249Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710093..710249 +
1690881197.7227023-CDS-C-linearis_contig88:710092..7102491690881197.7227023-CDS-C-linearis_contig88:710092..710249Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710093..710249 +
1622930688.0436022-CDS-C-linearis_contig88:710445..7105551622930688.0436022-CDS-C-linearis_contig88:710445..710555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710446..710555 +
1690881197.7338932-CDS-C-linearis_contig88:710445..7105551690881197.7338932-CDS-C-linearis_contig88:710445..710555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710446..710555 +
1622930688.0644338-CDS-C-linearis_contig88:710750..7117761622930688.0644338-CDS-C-linearis_contig88:710750..711776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710751..711776 +
1690881197.7441304-CDS-C-linearis_contig88:710750..7117761690881197.7441304-CDS-C-linearis_contig88:710750..711776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 710751..711776 +
1622930688.0842516-CDS-C-linearis_contig88:712096..7123271622930688.0842516-CDS-C-linearis_contig88:712096..712327Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 712097..712327 +
1690881197.7533453-CDS-C-linearis_contig88:712096..7123271690881197.7533453-CDS-C-linearis_contig88:712096..712327Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 712097..712327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16384.1prot_C-linearis_contig88.16384.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 707292..712327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16384.1

>prot_C-linearis_contig88.16384.1 ID=prot_C-linearis_contig88.16384.1|Name=mRNA_C-linearis_contig88.16384.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=710bp
MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSR
ILEEALTDLALQHRAKLSALDSELREDENKVRGSFERERATILGKQEKQF
VQLVDDAIKRAIGKSKSCSCAKKYLCHHNKTASFNTRRPKKEVIHFRKNA
KRLRHGGRLEESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSAL
DQLASQHQREISRMETAQANEWTLMLMRHRTARRNCHNAIMVEQKKASKR
LPFSLACKKSAEERHRREMLGEADPIEGGAAASGGPDEASSDVAGMLRSA
MDDEDSTIEDKEQGQAQEKSATNGVATARPTRPSSAPPARGRRPQLNTGN
NESSPQTSAPSAAARAAAGGGVINGEEDAGVDGDSFGKDSHDLEGFDDLE
GEAAEAFSYDHYPAAGSPEEPEWFHTPWCGTNSGDIPVLDKVFEKAPVGG
GDAPTMTQRVPLVPMSAPAALSSRGVSGKSAGGEDTSSFVEHSDTGGSST
KVEEITSAHPPRRERGHPDGGDGKAGVTIELSPVARGAGDEGVVAAMSPL
SLAGGKEGEDGRGSARRSPRRASGGVSSPRVIAGGGELKRYDWGGADVVP
TKPSLVAASKIPTGTRADKQRFRNARRKDANKKTISWGENVEVPPESDDD
EDGTDDGEEGTAGGDGEGSDRNNTDASNLDAVADGFVDDDFLKSDDDDDD
DGGRNKERTI
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mRNA from alignment at C-linearis_contig88:707292..712327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16384.1 ID=mRNA_C-linearis_contig88.16384.1|Name=mRNA_C-linearis_contig88.16384.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5036bp|location=Sequence derived from alignment at C-linearis_contig88:707292..712327+ (Chordaria linearis ClinC8C monoicous)
ATGGGGATCATGGCGAAGCTCAAGAAACTGCAGAAGGAGAGGCTGATCGT
GGCGCGGCTTGGTTTCCCAGACAAAGCCATGGAGATTGACGAGCACATCG
AAAAGATCCGTGCGGATCTCAGGGTGAGGTCGCGTGTGCGTGTGTGATAT
TGTCGTGGTTCTTCAGTCTCGACAGCAGTGTACACAGAGTGGGTGGAAAG
GCGAGATATATTTTGGCAGGGGGTGGTGCTCAGGTTCTGTGTCTGGTAGA
CAACCCGCGTGGCAGTGTTTCCGTGACTGCAAGGCCTGTACATTGTGTTT
CTCCTCCGTTCATTTTCTGTGCTGTAATGGTATCTTTATGTGTTTTTGGC
TGTCGTTTGTGTGTGTGTGTGTGTGGTTGGGGTGAACTCCGGTAGATATG
ACTTGTGAGATATTTTGCCTGAAGAAAAACGTTTACCCTTGACCGTAAAA
GAACCCTGCAACGAAGCATTCATCTCCATATACATCCTTTCCGTTGATCC
ATAGTCGTGAACGCGGGTATTTGCACCGGCGCCAACTCTGTTCGCCAACG
ATTTATCGCTCTCACGGGCAAAACTTGGCCGAACAGTTCACTTGAAGTGA
CTCGTGCCTCAAAACGCTAGGAATAAACGTGGAGATCAATTGTTTTTTCA
TCGTGGAAAACAGGCGATGATGAGAAAACCCACAGTAAACTGCGCTGATA
CAGCGGCGCATCCAAATACCAGTTAAATAGCTCTCATCGCGTACGTACCT
CAAACATCGCATGGCGTCATCAGAGCGAGCGCGAAAAGGTGGACTCAAGG
ATTCTCGAGGAGGCGTTGACGGATCTAGCTCTCCAGCACCGTGCAAAGCT
ATCGGCCCTTGATTCGGAGCTTAGAGAGGACGAAAACAAAGTCAGAGGTT
CTTTCGAGCGGGAGAGGGTGAGTGCTTCGAAGAGAAAGCAACCTTGGGGT
TGTGGTATCGCGTGAGGTCGCTAATTTTGGCCTCCAAAAAGCCTCCTCTG
TTAGGCGAGACGCCTTACACGTACTGGCCGCGATTACTTTTTGTCGAGCT
TGGTGAGTTATTTCGCCGTCCAAAACATGTGGAGGTGTCACCCTCCGGTC
CCATGAAACAGCGATGTCGAGAGGAGCATATCGTCGTATGCGTGTATTTT
CCGTTCGGGTGTATGGTGTATGTACCAACATCCATTCAGCCCTATACCGC
CGTGAAATCAAGCTTGCGCTTTTCGGCTGAAAGGAGCTGAGACAGGAACA
ACTGGGTGGTGGAGGAAAACTTCTCAATCCGACCCTGCCTTCGGCCTCCA
AGGCCATCGTCAGTTTAAATGGTGGTATGTAGCATCACGTCTACATTGTT
TCTTGAATAAATCAGGCTACCATTCTGGGGAAGCAGGAGAAGCAGTTTGT
GCAGCTTGTGGACGATGCAATCAAGCGAGCAATCGGGAAGAGCAAGGTGT
GCACTATCGTAGGACTCTGCCGGCAAGAAAATCTGAAGCCTCGCCATCGC
GTAAAGGTCTTTGCCTTTTTTGTTCTGGACACTTCAGATTCCTGTTCTGC
CAAGTATCCATTTACCTTCGACTCTCGCCGATCGCCTCCAGAAATGGCTC
ACGCATTCGGCAAGGATCAACGATAGCCAATTTCCAACGCATGGGAACGA
GTATATTTCAAGAGAAGATCAGAAAAACGGTGGGAATCAGAAACTCAGGT
GTGCATGGTGTAGGGTAAGTCGATGGTGCCCACTCGGTTCTTTAGGTTCA
TTCTGCATGATGAAGGGAGAGAAAAACAGACATCAAGAGAAGCAGACGAA
CAATCAAAGGCTAGACAAAAAAAGACTCACACTTGAGCGCACTCGGAACT
CAACTCTTCGGTGCTCTGCTGCTTTTGAGGTACTCTTCAAAACCGCGAAA
TACCGTTCGACCTTCGCGACCTTCGCGACCTTCGCCCCCCGTCCCGTCCC
CTCCCTGGCCTGGCCGACATCCATCTATTTAATGTTTAGTCGTGCTCTTG
CGCAAAGAAGTACCTATGCCACCACAACAAGACGGCGAGCTTCAACACTC
GCAGGCCAAAGAAGGAGGTCATCCACTTCAGAAAGAACGCGAAACGCCTC
CGGCACGGCGGCAGGCTGGAAGAGTCAGCGGTACGATTTTTCGATTTCGT
TTGCTATAGCACTCCGGGTTGGCTAAGCTAAGGGGCGAGTGGAGTGGTGG
AAGGTCGCAGGGGGTAGGGAGGGGGGCACATATTTCTCGTGTCTACCGAG
TCGTGTGTACTATAGGAACTGCCTACGAAGCCGCGACGCAGGACGCTGAA
GGGGGCGGACTCGCAGGTGGTGCGCTAAGAAGACGGGCATGGGAGGAAAA
AGACTTTGGAGCTGAAGAACAATCTTGAAACCTTCTCGAATGTCTCCTTT
TGATCTGGCAGCATCACAGCATGAAGAGGTTCTCGACGAGTAACCTTGGT
TGTCTTACTCGCTTCGTGGTTTTCGTTTCTGACCAGGCATGGGAGGAGAA
AGCCGCGGAGCTTGACGCGGACCATCTCGACAAGTGGCGGGAAGAAGTCG
CGGCCAGCCTCACGGCGAGCGCGTGGGGGGGGAGCAGCTCGGCCCTGGAT
CAAGTGAGAGTTTGAAACACCCACTGGAGCTCACGAAATTATTTTGGGGG
GTACAAATGAAGGAGTTCTTAGTCGGTTGGGTAATATCCACATGAGCACA
TGGACCAAAACGTAGGAACAAAAGCGTTATCGTAACTGTGGTTCGTGCTA
GCCTGTGCGTGATTCTCCTTGCACTGCGTTTGTGATGGTGCTTGCGCATA
GCTCGCCTCTCAACACCAACGAGAGATCAGCCGGATGGAGACGGCGCAGG
CAAACGAGTGGACTCTCATGCTGATGCGGCACCGAACTGCTCGGAGAAAC
TGTCACAACGCCATCATGGTCGAGCAGAAGAAGGCAAGCAAGAGGTTGCC
ATTTTCCCGTTCATCCTGCCTTTTTTTAATGCGACCTCGTTTGTGCCGAC
GATGGAGCACAACACTGATTGAAAAAGAGTTCGTACTTGACATGGCGTTC
GATGTCAGAGTAACCACTTACACAAATAACTTTCACGAGCGTGATGGTTT
GGCGTACGCCCACCTAACCCGCCACGCCCTCTCCTTTCGAACTCCAGCTC
CGAGTTGCATGCAAGAAGAGTGCCGAGGAGCGGCATCGGAGAGAGATGCT
TGGAGAGGCTGATCCAATCGAAGGCGGAGCAGCAGCCTCTGGCGGTCCTG
ATGAGGCGAGTAGTGTTTTTTCCCGCGCATCTCCACATCGAGTCCATCGT
AGCATGAATGTTACCCTCTTCCTGCTCAAGCCCTTCAGTGGAGCCCTTCA
AAGCTACTGCTGGAGTAGATGTTTTGAGCAACGTGCCCTTGCAGTAGTGA
CCGAACACGCAAAACTTTACCAGTTCGAACCCTCACGCCATTTTTGTTTT
AACCGATAGGACGTTGCGGGCATGCTCAGAAGCGCCATGGATGACGAAGA
TTCCACCATCGAAGACAAGGAGCAAGGTCAGGCGCAAGAGAAATCTGCAA
CGAACGGCGTGGCGACAGCCCGACCGACACGGCCCAGCAGCGCGCCGCCG
GCCCGTGGCAGGAGGCCGCAGCTCAACACCGGCAATAACGAAAGCAGCCC
GCAGACATCGGCACCATCCGCGGCAGCGCGGGCAGCGGCAGGAGGGGGTG
TCATCAACGGCGAGGAGGATGCAGGCGTCGATGGCGATTCGTTCGGAAAA
GACTCGCACGACCTCGAAGGGTTCGACGACCTCGAGGGTGAGGCGGCGGA
GGCGTTCTCGTACGATCACTATCCCGCCGCGGGCTCCCCGGAGGAGCCAG
AGTGGTTCCACACCCCGTGGTGCGGCACGAACAGCGGCGACATCCCCGTC
CTCGACAAGGTTTTCGAAAAGGCGCCTGTTGGTGGTGGCGACGCACCAAC
GATGACGCAGCGAGTTCCGCTGGTGCCGATGTCCGCCCCGGCCGCCCTCT
CAAGCAGGGGGGTCAGTGGTAAGAGCGCCGGCGGTGAGGATACCTCCAGT
TTCGTCGAACACAGCGATACCGGGGGGAGCAGCACAAAAGTCGAAGAAAT
CACGAGTGCCCACCCTCCCCGCCGTGAGAGGGGGCACCCCGATGGCGGAG
ATGGCAAAGCTGGAGTTACCATAGAACTTTCGCCGGTTGCTCGCGGCGCG
GGAGACGAGGGGGTCGTAGCAGCAATGTCGCCGCTCAGCTTGGCGGGAGG
CAAGGAGGGGGAAGACGGTAGAGGCAGCGCGCGGAGAAGTCCACGCCGGG
CAAGCGGCGGCGTGTCTTCGCCGAGGGTCATCGCAGGGGGTGGAGAGCTG
AAGAGGTATGATTGGGGCGGGGCTGATGTCGTTCCGACGAAGCCGTCGCT
CGTCGCGGCGAGCAAGATACCGACGGGGACTCGCGCCGACAAGCAAAGAT
TCAGAAACGCCAGGAGGAAAGACGCCAACAAGAAGGTGGGAATCGTTGGA
CGACCGATGGACAAACTCTCATATGCTCTTGATGGTATAGAGCTTTTCTC
CCTGCGATAGGAGAAGTGGGCTCGGTTTACGGTCCTCGCTCTCGACCCGA
GTCGTCGTGCCGGCATGCTTAAGCTACCGGTAAAATTCTTTTTTCTTTGT
TTTTTTTGTTTTTTTCCTTTTTATATCCGTACTGTACTCAATCTTGCCTC
GGCGCTTTGTGTGTATGCAGTAGAGCTCGTTGTGCTCAACTTCTACGCAC
TGAGTACCGCTACGCTTTCCATTGGCGCCGATCGCGTGTGGTACTCGATG
TGCAGACTATTTCCTGGGGTGAGAACGTGGAGGTTCCGCCAGAGTCTGAC
GATGACGAAGACGGCACTGACGATGGAGAAGAAGGCACTGCTGGAGGGGA
CGGTGAAGGGTCGGACAGAAACAACACGGATGCCAGCAATCTTGATGCCG
TCGCCGACGGGTTCGTCGACGACGATTTTCTCAAGAGCGATGACGACGAC
GACGACGACGGTGGGCGCAACAAGGAGAGAACGATT
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Coding sequence (CDS) from alignment at C-linearis_contig88:707292..712327+

>mRNA_C-linearis_contig88.16384.1 ID=mRNA_C-linearis_contig88.16384.1|Name=mRNA_C-linearis_contig88.16384.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4260bp|location=Sequence derived from alignment at C-linearis_contig88:707292..712327+ (Chordaria linearis ClinC8C monoicous)
ATGGGGATCATGGCGAAGCTCAAGAAACTGCAGAAGGAGAGGCTGATCGT
GGCGCGGCTTGGTTTCCCAGACAAAGCCATGGAGATTGACGAGCACATCG
AAAAGATCCGTGCGGATCTCAGGATGGGGATCATGGCGAAGCTCAAGAAA
CTGCAGAAGGAGAGGCTGATCGTGGCGCGGCTTGGTTTCCCAGACAAAGC
CATGGAGATTGACGAGCACATCGAAAAGATCCGTGCGGATCTCAGGAGCG
AGCGCGAAAAGGTGGACTCAAGGATTCTCGAGGAGGCGTTGACGGATCTA
GCTCTCCAGCACCGTGCAAAGCTATCGGCCCTTGATTCGGAGCTTAGAGA
GGACGAAAACAAAGTCAGAGGTTCTTTCGAGCGGGAGAGGAGCGAGCGCG
AAAAGGTGGACTCAAGGATTCTCGAGGAGGCGTTGACGGATCTAGCTCTC
CAGCACCGTGCAAAGCTATCGGCCCTTGATTCGGAGCTTAGAGAGGACGA
AAACAAAGTCAGAGGTTCTTTCGAGCGGGAGAGGGCTACCATTCTGGGGA
AGCAGGAGAAGCAGTTTGTGCAGCTTGTGGACGATGCAATCAAGCGAGCA
ATCGGGAAGAGCAAGGCTACCATTCTGGGGAAGCAGGAGAAGCAGTTTGT
GCAGCTTGTGGACGATGCAATCAAGCGAGCAATCGGGAAGAGCAAGTCGT
GCTCTTGCGCAAAGAAGTACCTATGCCACCACAACAAGACGGCGAGCTTC
AACACTCGCAGGCCAAAGAAGGAGGTCATCCACTTCAGAAAGAACGCGAA
ACGCCTCCGGCACGGCGGCAGGCTGGAAGAGTCAGCGTCGTGCTCTTGCG
CAAAGAAGTACCTATGCCACCACAACAAGACGGCGAGCTTCAACACTCGC
AGGCCAAAGAAGGAGGTCATCCACTTCAGAAAGAACGCGAAACGCCTCCG
GCACGGCGGCAGGCTGGAAGAGTCAGCGGCATGGGAGGAGAAAGCCGCGG
AGCTTGACGCGGACCATCTCGACAAGTGGCGGGAAGAAGTCGCGGCCAGC
CTCACGGCGAGCGCGTGGGGGGGGAGCAGCTCGGCCCTGGATCAAGCATG
GGAGGAGAAAGCCGCGGAGCTTGACGCGGACCATCTCGACAAGTGGCGGG
AAGAAGTCGCGGCCAGCCTCACGGCGAGCGCGTGGGGGGGGAGCAGCTCG
GCCCTGGATCAACTCGCCTCTCAACACCAACGAGAGATCAGCCGGATGGA
GACGGCGCAGGCAAACGAGTGGACTCTCATGCTGATGCGGCACCGAACTG
CTCGGAGAAACTGTCACAACGCCATCATGGTCGAGCAGAAGAAGGCAAGC
AAGAGGTTGCCATTTTCCCCTCGCCTCTCAACACCAACGAGAGATCAGCC
GGATGGAGACGGCGCAGGCAAACGAGTGGACTCTCATGCTGATGCGGCAC
CGAACTGCTCGGAGAAACTGTCACAACGCCATCATGGTCGAGCAGAAGAA
GGCAAGCAAGAGGTTGCCATTTTCCCTTGCATGCAAGAAGAGTGCCGAGG
AGCGGCATCGGAGAGAGATGCTTGGAGAGGCTGATCCAATCGAAGGCGGA
GCAGCAGCCTCTGGCGGTCCTGATGAGGCGAGTAGTTTGCATGCAAGAAG
AGTGCCGAGGAGCGGCATCGGAGAGAGATGCTTGGAGAGGCTGATCCAAT
CGAAGGCGGAGCAGCAGCCTCTGGCGGTCCTGATGAGGCGAGTAGTGACG
TTGCGGGCATGCTCAGAAGCGCCATGGATGACGAAGATTCCACCATCGAA
GACAAGGAGCAAGGTCAGGCGCAAGAGAAATCTGCAACGAACGGCGTGGC
GACAGCCCGACCGACACGGCCCAGCAGCGCGCCGCCGGCCCGTGGCAGGA
GGCCGCAGCTCAACACCGGCAATAACGAAAGCAGCCCGCAGACATCGGCA
CCATCCGCGGCAGCGCGGGCAGCGGCAGGAGGGGGTGTCATCAACGGCGA
GGAGGATGCAGGCGTCGATGGCGATTCGTTCGGAAAAGACTCGCACGACC
TCGAAGGGTTCGACGACCTCGAGGGTGAGGCGGCGGAGGCGTTCTCGTAC
GATCACTATCCCGCCGCGGGCTCCCCGGAGGAGCCAGAGTGGTTCCACAC
CCCGTGGTGCGGCACGAACAGCGGCGACATCCCCGTCCTCGACAAGGTTT
TCGAAAAGGCGCCTGTTGGTGGTGGCGACGCACCAACGATGACGCAGCGA
GTTCCGCTGGTGCCGATGTCCGCCCCGGCCGCCCTCTCAAGCAGGGGGGT
CAGTGGTAAGAGCGCCGGCGGTGAGGATACCTCCAGTTTCGTCGAACACA
GCGATACCGGGGGGAGCAGCACAAAAGTCGAAGAAATCACGAGTGCCCAC
CCTCCCCGCCGTGAGAGGGGGCACCCCGATGGCGGAGATGGCAAAGCTGG
AGTTACCATAGAACTTTCGCCGGTTGCTCGCGGCGCGGGAGACGAGGGGG
TCGTAGCAGCAATGTCGCCGCTCAGCTTGGCGGGAGGCAAGGAGGGGGAA
GACGGTAGAGGCAGCGCGCGGAGAAGTCCACGCCGGGCAAGCGGCGGCGT
GTCTTCGCCGAGGGTCATCGCAGGGGGTGGAGAGCTGAAGAGGTATGATT
GGGGCGGGGCTGATGTCGTTCCGACGAAGCCGTCGCTCGTCGCGGCGAGC
AAGATACCGACGGGGACTCGCGCCGACAAGCAAAGATTCAGAAACGCCAG
GAGGAAAGACGCCAACAAGAAGGACGTTGCGGGCATGCTCAGAAGCGCCA
TGGATGACGAAGATTCCACCATCGAAGACAAGGAGCAAGGTCAGGCGCAA
GAGAAATCTGCAACGAACGGCGTGGCGACAGCCCGACCGACACGGCCCAG
CAGCGCGCCGCCGGCCCGTGGCAGGAGGCCGCAGCTCAACACCGGCAATA
ACGAAAGCAGCCCGCAGACATCGGCACCATCCGCGGCAGCGCGGGCAGCG
GCAGGAGGGGGTGTCATCAACGGCGAGGAGGATGCAGGCGTCGATGGCGA
TTCGTTCGGAAAAGACTCGCACGACCTCGAAGGGTTCGACGACCTCGAGG
GTGAGGCGGCGGAGGCGTTCTCGTACGATCACTATCCCGCCGCGGGCTCC
CCGGAGGAGCCAGAGTGGTTCCACACCCCGTGGTGCGGCACGAACAGCGG
CGACATCCCCGTCCTCGACAAGGTTTTCGAAAAGGCGCCTGTTGGTGGTG
GCGACGCACCAACGATGACGCAGCGAGTTCCGCTGGTGCCGATGTCCGCC
CCGGCCGCCCTCTCAAGCAGGGGGGTCAGTGGTAAGAGCGCCGGCGGTGA
GGATACCTCCAGTTTCGTCGAACACAGCGATACCGGGGGGAGCAGCACAA
AAGTCGAAGAAATCACGAGTGCCCACCCTCCCCGCCGTGAGAGGGGGCAC
CCCGATGGCGGAGATGGCAAAGCTGGAGTTACCATAGAACTTTCGCCGGT
TGCTCGCGGCGCGGGAGACGAGGGGGTCGTAGCAGCAATGTCGCCGCTCA
GCTTGGCGGGAGGCAAGGAGGGGGAAGACGGTAGAGGCAGCGCGCGGAGA
AGTCCACGCCGGGCAAGCGGCGGCGTGTCTTCGCCGAGGGTCATCGCAGG
GGGTGGAGAGCTGAAGAGGTATGATTGGGGCGGGGCTGATGTCGTTCCGA
CGAAGCCGTCGCTCGTCGCGGCGAGCAAGATACCGACGGGGACTCGCGCC
GACAAGCAAAGATTCAGAAACGCCAGGAGGAAAGACGCCAACAAGAAGAC
TATTTCCTGGGGTGAGAACGTGGAGGTTCCGCCAGAGTCTGACGATGACG
AAGACGGCACTGACGATGGAGAAGAAGGCACTGCTGGAGGGGACGGTGAA
GGGTCGGACAGAAACAACACGGATGCCAGCAATCTTGATGCCGTCGCCGA
CGGGTTCGTCGACGACGATTTTCTCAAGAGCGATGACGACGACGACGACG
ACGGTGGGCGCAACAAGGAGAGAACGATTACTATTTCCTGGGGTGAGAAC
GTGGAGGTTCCGCCAGAGTCTGACGATGACGAAGACGGCACTGACGATGG
AGAAGAAGGCACTGCTGGAGGGGACGGTGAAGGGTCGGACAGAAACAACA
CGGATGCCAGCAATCTTGATGCCGTCGCCGACGGGTTCGTCGACGACGAT
TTTCTCAAGAGCGATGACGACGACGACGACGACGGTGGGCGCAACAAGGA
GAGAACGATT
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