mRNA_C-linearis_contig88.16380.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 527 bits (1357), Expect = 3.450e-153 Identity = 349/828 (42.15%), Postives = 462/828 (55.80%), Query Frame = 3
Query: 1197 VFGWDGAGVIELGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNNDEGAFGGCIYARGGLLP*GARRGVHGVQSQPNGAFMYASDGSIVNIRNVSVTNGVWLPGGAACFYGG-------------------------------------------------------FIFLEEGETLSCSMGPPSATTSPTTRAELSTAETPIGSINSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTSDS-----IAVGIEHHLCRASEYTVLASDALISAMLREWT----ASCLD------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARAGGRSVARFAPPIRESSFPVRKMSVSTRSSGSNLLSDDTTAPVVRGHGDATGEDPPGV-----DVCRRESTHCQDTAA----ASPEAEGSAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAVVS 3428
V GWD G +E D +C++NTA GNGGCFY SG ++N T+MR+N G +G ++A G ++ +G F+YA+DG+ V I+ +V+N V A + G FIFLEE +LSC A T+ + + +NSSCDLI N APQG A YLT+T+Q ANF+NH++ + T+ S +Y +TSV A +++F+S + A+Q+E GA IAE CVFGGW GD+V+Q+A+ G LVLD CDFG ++A ++V+SPN DA IRNA VGDLT+ENAA V+++ L DR + CD+L+ CG G + LGVLCECLE+ CL GGGALSI L T P V Y PD FELL+SA A G+T AIW L F+ D L++ LP G+LPPGE+ TV V S Q+ GG FV++SVG T DS + V +LC+A EY + D + + A LD L +LPIR GY RSS +SL IH C H AC GAT++ S+ DYC +GY GPYC VC EG+G G NTC S TK R L+A GSLFAL +LL +++ V +LVGGLDAV +RRS++ RSV R+SS K+ S +S G N L+ + RG G A+ + V DV +S DT A P A G PG G +K+K WA+R+P K+K LVV+WQIL+VF SI++VDFPP YARFLS ID ++FD+G V+S
Sbjct: 345 VLGWDSTGTVEFNDVVCSNNTAG-GNGGCFYGSGRGILNAGTLMRSNG-GIYGASVFAFAGSYISVEGGNFTANRAVSSGGFLYATDGANVTIKGAAVSNNVADRRAGAVYCSGEFLDMGGXXXXXXXXXXXXXXXXXXXXXXVAWGDTTVVXXXXXXXXXXXXXXXXXFIFLEEEASLSCEGAIVQANTAGDQGGGIYARDATW--VNSSCDLICNQAPQGAAAYLTSTVQVANFQNHTVFDTETSGSSVVYVTETSVIASDVSFQSGGSLQEDSSNSAIQLEGGATLIAEDCVFGGWTGDSVIQNANPAEGSLVLDS-CDFGDTAAAMVVTSPNSDARIRNALVGDLTIENAAV-VNNSLALVDRTLGCDNLNICGSGECVDSALGVLCECLEDDECLGGGGALSIALKTPPPDVTYSPDLVYFELLVSATANGSTPAIWNLTFDADELSLQVLPSSGILPPGEDATVLVTGSPQGQEVGGDLVS-QFVVTSVGSGTPDSTTGVDVEVYSAFYLCQAFEYAMPVDDENAAFSCEQCVNIDGAEGLDCELPGATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTCHSCEGTKSRLLIAAGSLFALVILLLVILAVVYLVGGLDAVEGLRRSLST---RSVLSG----RDSSS--HKVGSSGKSIGRNALT-GSEVEERRGEGAASRKGVTSVPISEVDVSEMKSDASSDTDGEDDHAPPMARGGDQPGCCGQGEKIKRWAARLPMDKLKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLS 1155
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 487 bits (1254), Expect = 6.840e-140 Identity = 344/834 (41.25%), Postives = 439/834 (52.64%), Query Frame = 3
Query: 1197 VFGWDGAGVIELGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNNDEGAFGGCIYARGGLLP*GARRGVHGVQSQPNGAFMYASDGSIVNIRNVSVTNGVWLPGGAACFYGGFIFLEEGETLSCSMGPPSATTSPTTRAELSTAE------TPIGSINSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVG----GDTSDSIAVGIE------HHLCRASEYTVLASDALISAMLREWT-----ASCLD------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARA---------GGRSV------------------ARFAPPIRE-----SSFPVRKMSVST----------RSSGSN----------------LLSDDTTAPVVRGHGDATGEDPPGVDVCRRESTHCQDTAAASPEAEGSAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAVVS 3428
VFGWD G IEL D LC +NTAT G+GGC YV+G VVN+ TVM N EG +GGCI+ L G++ V G + N A V G + A FYGGFIFLEE +LSC T R + + +NSSCDLIGN APQG A YLT+T+ AANF+NH + + + S LYA DT++FA +NF+S + RA+Q+E +AEGCVFGGWMGD V+ +A+ G L LD CDF S+A ++ SP+ DA IRNAFVG T++NAA VD + VL D A CDS C G + LGVLCECLE+G CL+ GGALSI L P+V Y PD FELL+SA+A+G T IW L++E D L + P GVL PG VTV V + S +QQD GG F +SSVG G S + G+E +LC+A EY V +A+ E A +D L +LP+R GY RS +S + AC H+ +C GAT+V ++ DYC GY GPYCA C GYG G NTC DT+ RWL+ GSLF L LL L + + FLVGGLDAV +RR+V+R+ G RS A FAP E +SF ++ T RSS + LL TT + H AT G D A E + G+ +K+K WA+R+P K+K LVV+WQIL VF +I+ +FPP YA+FLS+IDFIN DIG++ S
Sbjct: 357 VFGWDEDGEIELHDILCTENTAT-GHGGCLYVAGVGVVNNGTVMITN-EGKYGGCIWDSFDLG--GSQVTVEGGRFTDNRALELGGAFVAWGTPTVLTITGGFFSNNTAKFYGGFIFLEEEASLSCEGA--------TIRDHYAGDQGGGIYGRDATWVNSSCDLIGNAAPQGAAVYLTHTVMAANFDNHEVTDNVASGGSVLYATDTALFATGLNFQSGVGLQEDSSNRAIQLEGETTLVAEGCVFGGWMGDTVIHNANTAEGSLALDS-CDFSESAAIMVAGSPHSDALIRNAFVGHHTIDNAAV-VDGSPVLVDNAFGCDS-GICAAGECVDSVLGVLCECLEDGVCLNDGGALSISLLVEPPNVTYSPDPVYFELLVSASADGVTPTIWNLSYEADGLELSPFPSSGVLSPGGNVTVMV-TGSPLQQDVGGDLVSRFAVSSVGSGGGGTAESSSSTGVELEVESAFYLCQAFEYAVPVDGDDDTAVSCEQCVAIDGAEGVDCELPGATLASLPVREGYWRSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTCHPCDDTRSRWLILAGSLFTLVTLLVLGLAIVFLVGGLDAVEGVRRTVSRSLSVSTKLPLGRRSASVGSGAAAAAEGAVPGIAASFAPAFEEGKGERNSFQGKQQQQQTAVDFFDDGLLRSSSKSPDTAVGGRNTGRFSGVLLPSATTVSGAQRH--ATLGPSSGXXXXXXXVQADLDRAREGWRKEDEKSAACCGIGEKIKRWAARLPMDKLKILVVVWQILTVFPTITGAEFPPAYAQFLSVIDFINLDIGSIFS 1172
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 459 bits (1181), Expect = 6.330e-130 Identity = 326/843 (38.67%), Postives = 436/843 (51.72%), Query Frame = 3
Query: 1197 VFGWDGAGVIELGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNNDEGAFGGCIYARGGLLP*GARRGVHGVQSQP---------------------------------------NGAFMYASDGSIVNIRNVSVTNGVWLPGGAACFYG---------------------GFIFLEEGETLSCSMGPPSATTSPTTRAELSTAETPIGSINSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTSDS---IAVGIEHHLCRASEYTVLASDALISAMLREWTASC-----LD------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARA--GGRSVARFAPPIRESSFPVRKMSVSTRSSGSNLLSDDTTAPVVRGHGDATGEDPPG--------------VDVCRRESTHCQDTAA----ASPEAEGSAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAVVS 3428
VFGWD AG IE + D GGCFY +G +N+ TVMR N + GGC+YA G + VHG + + +G + +G GFIFLEE +LSC T+ + + +NSSCDL+ N APQG A + TN ++AAN ++H++ + + +YA +TSV A ++F+S + A+Q+E GA IA+ CVFGGWMGD+V+Q+A+ G LVLD CDFG +SA ++V+SPN DA IRNA + DLT+ENAA V+ + L DRA+ CD+L CG G + GVLCECLE+G CL GGG LSI L T P V Y PD FELL+S A G+T IW L F D L + LP G+LPPGE+ TV V S Q+ GG F+++SVG S + + V +LC+A EY + D + E AS LD L +LP+R GY RS +SL IH C S+AC GA ++ S+ DYC +GY GPYCAVCAEG+G G N+C S TK R L+A GSLFAL +LL +++ V++LVGGLDAV +RRS++ + G RSV R+SS K S++S G + L+ D+ AP + + G VDV +S DT A P G PG G +K+K WA+R+P KIK LVV+WQIL+VF SI++VDFPP YARFLS I+ ++FD+ V+S
Sbjct: 339 VFGWDTAGRIEFSSGVVCSTNLADEKGGCFYTTGGGTINNGTVMRENISRS-GGCLYALNG-----SDVTVHGGEFRECQSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGNSLDMGGXXXXXXXXXXXXXXXXXXXXXVAAWGTPTVVXXXXXXXXXXXXXXXXGFIFLEEEASLSCEGAFVQGNTAGDQGGGIYARDATW--VNSSCDLLHNEAPQGAAAFFTNIVEAANLQSHTVTHTVESGGGVVYATETSVIASGVSFQSGVILQEDSSNSAIQLEGGATLIAKECVFGGWMGDSVIQNANPAEGSLVLDS-CDFGNTSAGMVVTSPNSDARIRNALLSDLTIENAAV-VNSSLALVDRALGCDNLGICGSGECVDSAFGVLCECLEDGECLGGGGTLSIVLKTPPPDVTYSPDLVYFELLVSTTANGSTPIIWNLTFGADELFLQVLPSSGMLPPGEDATVLVTGSPQGQEVGGDLVS-QFIVTSVGTSNSATDVDVEVYSAFYLCQAFEYA-MPVDGEDTTFSCEQCASVNGAEGLDCEIPGATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSCHSCEGTKSRLLIAAGSLFALVILLLIILTVAYLVGGLDAVEGLRRSLSTSFVGDRSVLSG----RDSSS--HKTGSSSKSIGRDRLA-DSVAPTFKVTSEVEERGAEGAASRKGVTSVPVSEVDVSEMKSDASSDTDTEDDNAPPMVRGGGQPGCCGHGEKIKRWAARLPMDKIKILVVVWQILSVFPSITAVDFPPAYARFLSWINMLSFDLEHVLS 1162
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 451 bits (1159), Expect = 8.000e-127 Identity = 332/870 (38.16%), Postives = 444/870 (51.03%), Query Frame = 3
Query: 1197 VFGWDGAGVIELGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNN---DEGAF----GGC-IYARGG---------------------------------LLP*GARRGVHGVQSQPNGAFMYASDGSIVNIRN---------------VSVTNGVWLPGGAACFYGGFIFLEEGETLSCSMGPPSATTSPTTRAELSTAETPIGSINSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAAS-STAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTSDSIA---VGIE----HHLCRASEYTVLASDALISA---MLREWTASCLDRLD-----TLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARA---GGRSVARFAPPIRESSFPVRKMSVSTRSSGSNLLSDDTTA---------PVVRGHGDA--------TGEDPP--GVD-----------VCRRESTHCQ----------------DTAAASPEAEGSAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAVVS 3428
VFGWD G + D +C+DNTA G GGC+Y +G +VND VMR N D+G GGC I GG G + G+F+ V++ GV+ +A FYGGF+ LEE +L+C G + + AET + +NSSCDLIGN APQG A YLT + +ANFE H++ + +TA S L +SV R +NF+S + V ++ A+ GGW+GD V A+ G LVL+ CDF SS T+ V+SP DAEIRNA VGDLT+EN V+D+ VL D+AM C +++ACG G +G LGVLCECLE+G CL+ GGA+++ ++ LP Y PD KF+L +SAAA GTT IW L +E + L ++ALP GVLPPG VT++V + S +QD GG FV+++VG TS A VG+E +LC A EY + + ++ +L + L +LP+R G+ RSS +SLVIH C HS+AC GAT + +S DYC GY GPYCAVCAEGYG G NTC S T +K R L+A GS+F L FL+GGLDAV +R SVAR+ G++ R P + + S S R+ ++ DD P+ G DA GED +D + +++ C+ D AA EA G RGL +K+K WASRVP K+K LVV+WQIL VF SI+ VD+PP Y+RFLS ID +NFD+G + S
Sbjct: 377 VFGWDPTGTVVFDDVVCSDNTAG-GLGGCYYAAGKGIVNDGAVMRGNSALDDGXXXXGSGGCDITVHGGEFAMCTAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGDTTGLGGSFVAXXXXXXXXXXXXXXXXXXXXXGYPTVVTIKGGVFR-NNSANFYGGFVHLEEEASLTCE-GATIEDNNAGDKGGGIYAETSVW-VNSSCDLIGNGAPQGAATYLTG-VTSANFEAHNVTDNVATAGGSVLGVSGSSVVMRGVNFQSADGLQEETCIFGVHTDSTASXXXXXXXXGGWLGDTVFYHANPSAGSLVLNS-CDFSESSTTMAVTSPYSDAEIRNALVGDLTIENVET-VNDSLVLVDQAMGCGAVNACGPGECVGSDLGVLCECLEDGVCLNNGGAITLTVSGDLPDETYRPDWVKFDLTVSAAANGTTPTIWNLTYEAEKLDLNALPSSGVLPPGGNVTISV-TGRSTEQDVGGGLISQFVVATVGSGTSADSATAGVGLEVETAFYLCEAFEYAMPDGEEQVTCEQCVLLDGAEGVDCELPGATQTSLPVRAGHWRSSEESLVIHGCLHSDACVGATEIVTSDDYCDGGYEGPYCAVCAEGYGKGVGNTCHSCTGSKARLLIAAGSVFFLVAXXXXXXAAVFLIGGLDAVASVRGSVARSLRVPGKTTTRAEQPFPPPGPTLPERSASARNISASRQVDDPAVEFDSGEVGGPITGGGFDAPDDLFGYDNGEDKSDGSIDFSDANLVLPLAIAGKDAAFCERFSVGGGGGSHPPVDADADAAPAEAVAGGQSGSRGLGEKIKGWASRVPLDKLKILVVVWQILTVFPSITGVDYPPSYSRFLSWIDVVNFDVGHIFS 1238
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 437 bits (1125), Expect = 8.760e-125 Identity = 317/853 (37.16%), Postives = 422/853 (49.47%), Query Frame = 3
Query: 1230 LGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNNDEGAFGGCIYARGGLLP*GARRGVHGVQSQPNGAFMYASDGSIVNI------RNVS--------------------------------------------VTNGVWLPGG-----AACFYGGFIFLEEGETLSCSMGPPSATTSPTTRAELSTAETPIGS-------INSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTSDS--------IAVGIEHHLCRASEYTVLASDALISAMLREWTAS--CLD-----------------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARA---GGRSVARFAPPIRESSFPVRKMSVSTRSS-------------------GSNLLSDD---TTAPVVRGHGDATGED--PPGVDVCRRESTHCQDTAAASPEAEG-SAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAV 3422
+ D C+ N A + NGGCFY +G +VN + + G +S NG FMY SDG V I NV+ TN V + GG A FYGGFIFLEE +LSC T + S + G +NSSCDLIGN APQG A YLT+T+ AANF+NH + + + S YA DT++FA +NF+S + RA+Q+E +AEGCVFGGWMGD V+++A+ G L LD CDF S+A ++V+SP D IRNA V LT+ENAA V+D+ VL D A C + C G + LGVLCECL G CL GGGALS+++ T P+V Y PD FELL+SA+A+G T AIW L+ E ++L + LP G+LPPGE VTV V + S +Q D GG FV++S G T++S + V +LC+A EY + AS CL L ++P+R GY RSS +SLV+H C HS+AC GAT++ SS DYC+ Y GPYCAVCAEG G +TC + K R LM G +F + ++LFL V + FL+GGLDAV +R S++R G+ + E + + S RS+ G+ + ++ T A G GD + E + + A +A G SA G GL ++K W S +P K+K LVV+WQIL VF SI+ V FPP Y+RFLS ID +N D+G V
Sbjct: 1 MNDVTCSLNEAEE-NGGCFYSAGIGIVNXXXXXXXXXXXXXXXXXXSADSNVNVNGGE-FRGCRSTGNGGFMYVSDGGTVTITGGLVANNVAERRAGVVYSSGDSNDLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXTNVVTVTGGYFVNNTAKFYGGFIFLEEEASLSCEGA---------TIRDHSAGDQGGGIYGRDAAWVNSSCDLIGNAAPQGAAVYLTHTVMAANFDNHEVTDNVASGGSVFYATDTALFATGLNFQSGVGLQEDSSNRAIQLEGETTLVAEGCVFGGWMGDTVIRNANTAPGSLTLDS-CDFSESAAVMVVTSPQSDTIIRNAIVDHLTIENAA-LVNDSLVLVDNAFDCGTPGICAAGECVDSVLGVLCECLSEGYCLDGGGALSVDVLTAPPNVTYSPDPVYFELLVSASADGVTPAIWNLSHEAEDLGLQVLPSSGILPPGENVTVAV-TGSPLQDDVGGVLVTRFVVTSAGSGTAESXXXXXXVELEVESAFYLCQAFEYAMPVDSEXXXXXXXPDAASVVCLQCANLDGAEGLDCESPGATLASMPVREGYWRSSQESLVVHGCLHSDACAGATQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTCHRCSGIKSRLLMFAGIVFGVTIVLFLGVAIVFLIGGLDAVDSVRLSMSRKLSISGKPRGGISRSHHEGTSSISSKRPSGRSNFGGDXXXXXXXXRGRSAAVGNAAVDEEKTRTAAVAGLGPGDYSPERRLSAAATAAAIDRARILEAGARMSDAGGESARTGCCGLGGRIKRWVSLLPMDKLKILVVVWQILTVFPSITGVQFPPSYSRFLSWIDVVNLDVGHV 839
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 1.250e-113 Identity = 265/644 (41.15%), Postives = 358/644 (55.59%), Query Frame = 3
Query: 1653 INSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRS-----DSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTSDS-------IAVGIEHHLCRASEYTVLA------SDALISAMLREWTASCLD------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVAR---AGGRSVARFAPPIRESSFPVRKMSVSTRSSGSNLLSDD------------------------TTAPVVRGHGDATGEDP--PGVDVCRRESTHCQDTAAASPEAEG-SAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAV 3422
+NSSCDLIGN APQG A YLT+T+ AANF NH + + + S LYA +T+VFA +NF+S + RA+Q+E +A+GCVFGGWMGD V+++++ G L LD CDF S+A ++V SP+ DA IRNA V LT+ENAA V+D+ VL D A C + C G + LGVLCECL CL+ GGALSI L +V Y PD FELL+SA+A+G T IW L++E D+L + LP G+LPPGE VTV + + + +Q D GG FV++S G T++S + V E +LC+A EY + +D + A LD L +LP+R GY RSS +SLV+H C +S+AC G T++ SS DYC+ Y GPYCAVCAEG G +TC + K R LM G +F + ++LFL + + FL+GGLDAV +R S++R G+ + E S +K S SN DD T A + G GD + E P + + A +A G S+ G GL ++K W S +P K+K LVV+WQIL VF SI+ V FPP Y+RFLS +D +N D+G V
Sbjct: 546 VNSSCDLIGNAAPQGAAVYLTHTVMAANFTNHEVTDNVASGGSVLYATETAVFATGLNFQSGVGLQEDSSNRAIQLEGETTLVADGCVFGGWMGDTVIRNSNTAPGSLTLDS-CDFSESAAVMVVGSPHSDALIRNAVVDHLTIENAA-LVNDSLVLVDNAFDCRTSGICAAGECVDSVLGVLCECLSEDYCLNDGGALSISLLVHPLNVTYSPDPVYFELLVSASADGVTPTIWNLSYEADDLGLQVLPSSGILPPGENVTVAI-TGNPLQDDVGGVLVTRFVVTSAGSGTAESSSSTGVELEVKSEFYLCQAFEYAMPVDGDDDDNDPVCLQCANFDGAEGLDCESPGATLASLPVREGYWRSSQESLVVHGCLNSDACAGGTQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTCYRCSGIKSRLLMFAGIVFGVTIVLFLGLAIVFLIGGLDAVNSMRLSMSRKLSVSGKIRGSISRSYHEGSSTSKKPS-----GRSNFGEDDXXXXXXXXXSAAVGDAAVDEEKTRTAAVIGLGPGDYSPERPLSTAATAAAVDRARILEVGARMSDAGGESSRTGCCGLGGRIKRWVSLLPMDKLKILVVVWQILTVFPSITGVQFPPSYSRFLSWVDVVNLDVGQV 1181
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 380 bits (975), Expect = 3.850e-106 Identity = 282/769 (36.67%), Postives = 368/769 (47.85%), Query Frame = 3
Query: 1194 QVFGWDGAGVIELGDFLCADNTATDGNGGCFYVSGDSVVNDETVMRNNDEGAFGGCIYARGGLLP*GARRGVHGVQSQPNGAFMYASDGSIVNIRNVSVTNGVWLPGGAACFYGGFIFLEEGETLSCSMGPPSATTSPTTRAELSTAETPIGSINSSCDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRSDSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMVSSPNFDAEIRNAFVGDLTVENAAAFVDDAFVLADRAMSCDSLSACGVGS*LGGTLGVLCECLENGACLSGGGALSIELNTRLPSVVYHPDSFKFELLISAAAEGTTSAIWELAFEVDNLTVHALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVG----GDTSDSIAVGIE------HHLCRASEYTVLASDALISAMLREWT-----ASCLD------RLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGEIRRSVARAGGRSVARFAPPIRESSFPVRKMSVSTRSSGSNLLSDDTTAPVVRGHGDATGEDPPGVDVCRRESTHCQDTAAASPEA---EGSAAPGRRGLVKKLKLWASRVPFAKIKTLVVIWQILAVFLSISSVDFPPFYARFLSLIDFINFDIGAVVS 3428
VFGWD G IEL D LC +NTA G+GGC YV+G VVN+ TVM N EG +GGCIYA GG + NGAFM+ASDG++VN+++ +V NGV GA + G F G + T E S N + +L G + GT LT + GG+ + CDF S+A ++V SP+ DA IRNA V LT+ENAA V+D+ VL D A C + C G + LGVLCEC CL+ GGALSI L +V Y PD FELL+SA+A+G T AIW L+ E ++L + LP G+L PGE VTV V + S ++QD GG F +SSVG G S + G+E +LC+A EY V +A+ E A +D L +LP+R GY RS +S + AC H+ +C GAT V +S DYC GY GPYCA C GYG G NTC S T+FRWL+ GSLF L LL L + V FL+GGLDAV +RR+V+R+ SV P R S+ + + + T A G G+ D+ E E + G+ +K+K W +R+P K+K LVV+WQIL VF SI+ +FPP YA+FLS+IDFIN DIG++ S
Sbjct: 1 MVFGWDEDGEIELHDILCTENTAI-GHGGCLYVAGVGVVNNGTVMVKN-EGKYGGCIYAYGGSDLEVLGGEFTACLATSNGAFMFASDGALVNVKDATVRNGVATRRGAVIYCSGDSFDLGGSQV--------------------TVEGGTFSDNRALELGGAFVAWGTPTVLT-------------------------------------------------------------ITGGFFSNNTAN--------------CDFSESAAVMVVGSPHSDALIRNAVVDHLTIENAA-LVNDSLVLVDNAFDCGTSGICAAGECVDSVLGVLCECPSEDYCLNDGGALSISLLVHPLNVTYSPDPVYFELLVSASADGVTPAIWNLSHEAEDLGLQVLPSSGILSPGENVTVAV-TGSPLRQDVGGDLVSRFAVSSVGSSGGGTAESSSSTGLELEVESAFYLCQAFEYAVPVDGDDDTAVSCEQCVVIDGAEGVDCELPGATLASLPVREGYWRSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTCHSCDGTRFRWLIFAGSLFTLVTLLVLGLAVVFLIGGLDAVEGVRRTVSRS--LSVTTRLPLGRRSASVGSGAAAAAEGAVPGFAHSFTPA-FEEGRGERHSSQGKQXXXXXXXXXTAMDSFNRPGEGWRKEDEKSAACCGIGEKIKRWTARLPMDKLKILVVVWQILTVFPSITGAEFPPAYAQFLSIIDFINLDIGSIFS 667
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 105 bits (263), Expect = 8.660e-19 Identity = 157/568 (27.64%), Postives = 227/568 (39.96%), Query Frame = 3
Query: 1665 CDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFRSDSPGGR---AVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMV-SSPNFDAEIRNAFVGD---LTVENAAAFVDD---AFVLADRAMSCD------SLSACGVGS*-LGGTLGVLCECLENGACLSGG-----------GALSIELNTRLPSVVYHPDSFKFELLI---------------------SAAAEGTTSAIWE-----LAFEVDNLTVHALPLRGVLPPGEEVTVNV----------DSSSSVQQDGGGK--------------QEISFVLSSVGGDTSDSIAVGIEHHLCRASEY----------TVLASDALISAMLREWTASCLDR---LDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVS-----FLVGGLDAVGEIRRSVARAGGRSVARFAPPIRESSFPVRKMSVSTRSSGSN 3080
CDL+ N A G A Y + + + + A S ++ + +++ + F +D+ G AVQ + ++ AE F G+ G+AVV S G+L LDD CDF S+A+++V S N +RNA +GD V AA+ D A L ++CD S C GS + G LGV C+C + ++ G G LS+ + + VY P +LL+ SA A IW L+ E + P G+L PG +T++V +++ S Q DG Q S G + S V H C + Y +V + E +C + TLPI+ GY R+S DS+ I C + +AC G + V S +YC GY GP CAVCA GYG G N C T F+ GG F LAV L + V+ +LVGG AV + R R + R + S R+ S GS+
Sbjct: 572 CDLVNNSALAGPAIYARDNAEVV-LRGVELYDNVVARGSVVFIVSSNLTTYQTVF-TDTEGSSDLSAVQADEDSSYKAEDTSFVGFAGEAVVFS----EGILYLDD-CDFSGSAASVLVYSERNSTTVVRNAVLGDNNYFDVAEAASEAGDIPTAHSLISVNVTCDGWMPFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPSETCVTGDPGLLSLTVLSEPADAVY-PTMLDGDLLLTLNDDETVTTSSSAGGSGVALSAGAGTEGGVIWNVSALVLSSEEGLMEWTVFPSTGLLLPGRSITLHVVTLPLDDFNGEATVSFQADGMSPPASLVAEAAAAVVVQTTSLADDGEGETAAASFDVSFVH--CESGTYWNNSCDPEGDSVSCCELCTDVDGDEDGVNCDENGATTRTLPIQSGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANACHLCT-ASFK----GGMYFVLAVAALLTLFVAALLAVYLVGGRGAVSTTMTNT-RESVRMLQRRGSGLLRSEGTTRRFHFSASGGGSS 1123
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 5.770e-17 Identity = 141/526 (26.81%), Postives = 213/526 (40.49%), Query Frame = 3
Query: 1665 CDLIGNWAPQGTANYLTNTLQAANFENHSIAASSTAVESALYAIDTSVFAREMNFR--SDSPGGRAVQVEAGAAPIAEGCVFGGWMGDAVVQSASAMNGLLVLDDDCDFGRSSATLMV-SSPNFDAEIRNAFVGD---LTVENAAAFVDD---AFVLADRAMSCD------SLSACGVGS*-LGGTLGVLCECLENGACLSGG-----------GALSIELNTRLPSVVYHPDSFKFELL---------------------ISAAAEGTTSAIWE---LAFEVDNLTVH--ALPLRGVLPPGEEVTVNVDSSSSVQQDGGGKQEISFVLSSVGGDTS----------------------DSIAVGIEHHLCRASEYTVLASDALISAMLREWTASCLDRLD----------------TLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTC---CSSTDTKFRWLMAGGSLFALAVLLFLVVGVSFLVGGLDAVGE 2960
CDL+ N A G A Y + + + + A S ++ + +++ + F + SP AVQ + ++ AE F G+ G AVV S G L LD+ C+F S+A+++V S + +RNA +GD V AA+ ++ A L + ++CD S S C GS + G LGV C+C + ++ G G L++ + + VY P ELL +S A IW L F + ++ P G+L PG +T++V + S +D G+ +SF + S D+ A + E T ++ C D LD TLP++ GY R+S DS+ I C + +AC G + V S +YC GY GP CAVCA GYG G N C +S +++A SL L V+ L V +LVGG AV
Sbjct: 222 CDLVNNSALAGPAIYARDNAEVV-LRGVELCDNVVARGSVVFVVSSNLTTYQTVFTDTAGSPDLSAVQADEDSSYKAEDTSFVGFAGRAVVFS----EGTLYLDE-CNFSGSTASVLVYSEGDSTTVVRNAVLGDNNYFDVAKAASTANEIPTAHSLINVNVTCDGWMPFSSTSPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPSETCVTGDPGLLNLTVLSEPADAVY-PTMLDGELLATLNDDETVTTSSSTGGSGVAVSGGAGTEGGVIWNVSALPFSLGEGSMEWTVFPSTGLLLPGRSITLHVVTLPS--EDFNGEATVSFQADGMSPPASPAAEXXXXXXXXXXXXXXXXXXDTAAASFDVSFFHCLEGTYWNNECDTGGDSDSCCELCTD-LDGDEDGVDCEDMGATTRTLPVQSGYWRASLDSVYIRQCFNEDACRGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANACHLCTASFKGGMYFVLAVASLLTLFVVALLAV---YLVGGRGAVSN 734
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 9.260e-12 Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 3
Query: 2643 TLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSSDYCQKGYTGPYCAVCAEGYGAGGDNTCCSSTDTKFRWLMAGGSLFALAVLLFLVVGVS-----FLVGGLDAVGEIRRSVARAGGRSVARFAPPIRESSFPVRKMSVSTRSSGSN 3080
TLP++PGY R+S DS+ I C + +AC G + V S +YC GY GP CAVCA GYG G N C T F+ GG F LAV L + V+ +LVGG AV + R R + R + S R+ + S GS+
Sbjct: 1090 TLPVQPGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCAPGYGRGVANACHLCT-ASFK----GGMYFVLAVAALLTLFVAALLAVYLVGGRGAVSTTMTNT-RESVRMLQRRGSGLLRSEGTNRRFNFSASGDGSS 1234 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig88.16380.1 >prot_C-linearis_contig88.16380.1 ID=prot_C-linearis_contig88.16380.1|Name=mRNA_C-linearis_contig88.16380.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=400bp MLREWTASCLDRLDTLPIRPGYKRSSSDSLVIHACRHSNACTGATRVWSSback to top mRNA from alignment at C-linearis_contig88:670374..678345+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig88.16380.1 ID=mRNA_C-linearis_contig88.16380.1|Name=mRNA_C-linearis_contig88.16380.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7972bp|location=Sequence derived from alignment at C-linearis_contig88:670374..678345+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig88:670374..678345+ >mRNA_C-linearis_contig88.16380.1 ID=mRNA_C-linearis_contig88.16380.1|Name=mRNA_C-linearis_contig88.16380.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2400bp|location=Sequence derived from alignment at C-linearis_contig88:670374..678345+ (Chordaria linearis ClinC8C monoicous)back to top |