mRNA_C-linearis_contig88.16379.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16379.1
Unique NamemRNA_C-linearis_contig88.16379.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A835YIT5_9STRA (DOT1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIT5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.150e-69
Identity = 134/278 (48.20%), Postives = 181/278 (65.11%), Query Frame = 1 
Query:  193 LLAYSDEATT--AAKSVSQSVQLIGLAGVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCDVTDVDIVFAYATKYSTER-GIYLTELSRKLLDLKSGAKVITIDKRLQGP-FNLISTVLDPNGDLQTSTGFLWQR 1014
            LLAYSDE T   A  +V  S   IG+    T+GLFG L   L  P  GKI L+E+E  A++A + LYD T   + +TE+GT GEVKR++ A   +  YQ+GKD REVR KTL+YAE +   LA +LR A   +G+VF D+GSG G+A+++A  L+P L  C GVE L GLH++++ YA K S      AP+  V  +F D   D+++  IVFAY+T+Y+T   GI LTEL  KL +L  GA+VIT D+RL+ P F LI  + DPNGDLQ +TGF+W++
Sbjct:   16 LLAYSDEFTIGGAKPTVQLSTAAIGITSALTLGLFGALGLLLTKPGTGKIALSEEEASALEAVSSLYDVTDADKAVTERGTAGEVKRKQAAEKFKLDYQRGKDVREVRDKTLAYAEVEGALLAALLRAAAPQEGEVFFDLGSGMGRALLSAAALHPELGECVGVEFLAGLHKQAQGYASKLSRAVPRAAPVRLVNADFCDPSVDISNAGIVFAYSTRYATASDGITLTELGEKLKELPKGARVITTDRRLRAPDFQLIKQINDPNGDLQLTTGFVWRK 293
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A6V1MPI0_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MPI0_HETAK)

HSP 1 Score: 224 bits (570), Expect = 7.560e-65
Identity = 134/278 (48.20%), Postives = 175/278 (62.95%), Query Frame = 1 
Query:  193 LLAYSDEA----TTAAKSVSQSVQLIGLAGVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 1014
            LL+YSDEA    T  A S++    L G        +F   AS +    A    LTE+EQ  V     +YD+T + + LTE GTVGE  R++ A  AR  YQKGKDPREVR +TL+YAE DLP+LA +LR+A   +G VF+D+GSG GKAV AA  LYP  S C GVE L  L   +K +  K   +      ID V  +F DE  DV++ D++FAY++KY    GIYLTELS+KL + KSGAK+ITID+RL+GPF L+  + DPNGDLQ   G++++R
Sbjct:   56 LLSYSDEAPELNTLIAGSIAGFTILTG-------AIFAFFASNVGSSTASSFVLTEEEQAVVVGINNVYDATEKERVLTEAGTVGETARKKKAAEARAAYQKGKDPREVRDRTLNYAEMDLPFLATLLRIANPKEGQVFMDLGSGAGKAVFAAAKLYP-WSKCVGVEFLAPLTAMAKNFQGKAGRVPGYSPKIDLVTSDFTDEKLDVSEADVLFAYSSKYDAN-GIYLTELSQKLQECKSGAKIITIDRRLKGPFTLVRELDDPNGDLQRLRGYVFKR 324
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BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A7S1XJM1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJM1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.850e-52
Identity = 120/283 (42.40%), Postives = 174/283 (61.48%), Query Frame = 1 
Query:  190 LLLAYSDEATTAAKSVSQSVQ-LIGLAGVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCD------VTDVDIVFAYATKYSTERGIYLTELSRKLLDL-KSGAKVITIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 1014
            L+ AYSD+     +  S  V   IG   +   GLF VLA +L       ++LTE+E  AV AA L +D+    QELTE GT+GEV+R+  A+ A+D++  GK+ REVR KTL+YAE DLP+LA +LR  Q   G+ FLD+GSG G+AVV    LYP+L+   G+EIL  LH+++  YARK    G   A  +FV  +F D   +      + + DI+FA+AT++++     LTE+S  L +  K GA++IT+D+RL+GPF L   + D  GDLQ + G+++ +
Sbjct:   55 LVTAYSDDQNAFLEGFSPVVAGSIGATTLVIGGLFAVLAQSLGGGSRVAVDLTEEEDAAVTAAALAFDTAAD-QELTEAGTIGEVRRKAEAVKAKDRFNAGKEGREVRDKTLAYAEVDLPWLATLLRQVQPAAGETFLDLGSGMGRAVVGTAALYPSLAKVTGIEILPDLHKKASGYARKLRTRG---AKTEFVNADFCDVETNKKVASAIGEADIIFAFATRFASVSDT-LTEMSAVLAEYAKPGARIITLDRRLRGPFKLEREIDDLRGDLQLTRGYIYTK 332
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BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A4D9D1A5_9STRA (DOT1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1A5_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.020e-42
Identity = 109/275 (39.64%), Postives = 155/275 (56.36%), Query Frame = 1 
Query:  193 LLAYSDEATTAAKSVSQSVQLIGLAGVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQG-PFNLISTVLDPNGDLQTSTGFLWQR 1014
            LLAY+D+      +    V  IG+   G  G+F +L   LK        L+E EQ AVDA   LYD   +   LTE GTVG V+R++LA  A++ YQ+G+D REVR KTL YAE DL +LA +L  ++     VF D+GSG G+AV+ A  L        GVE L GLH+E+  Y  K+  L    +P   V  +FVD   D++D ++VF YATKYS +       +   L     GA++I++D+RL    + L+ T+ DP GDLQ   G+++++
Sbjct:   56 LLAYTDDTKPTLNAEIIGVSSIGVF-AGLAGIFALLTKNLKNKNFA-FTLSEDEQAAVDAVEALYDPKEEDLALTEAGTVGFVRRKQLAEKAKESYQQGRDDREVRDKTLYYAEIDLAFLAVLLGASKPSGSGVFYDLGSGVGRAVLGAAKL-ARWKKAIGVEYLGGLHKEAIKYEGKFKRL--RGSPTQLVNKDFVD--VDLSDAEVVFIYATKYSRD-------IDDVLATAPVGARIISLDRRLNARQYKLLKTIEDPRGDLQLVFGYVYEK 316
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: D7FM53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM53_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 6.720e-40
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:  781 VDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ 1017
            +DE  DV+DVDIVFAYATKYSTERGIYLTELSRKLLDLKSGA+V+TIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ
Sbjct:    1 MDEEIDVSDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGARVVTIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ 79
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A7S2UU31_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UU31_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.470e-37
Identity = 103/280 (36.79%), Postives = 156/280 (55.71%), Query Frame = 1 
Query:  193 LLAYSDEATTAAKSVSQSVQLIGLA------GVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 1014
            LLAYSD+        +  V + G+       GVG V L   + SA       K  LTE+E+E V      +DS P  +ELTE GT G V RR  A+ +++ YQKGK  R+++ K+L Y+E DL ++A +LR AQ   G V +D+GSG G++ +    ++P+ S C G+E L  L   +  Y  K  G   + A ++F  G+F  E  D+++ D+VF     Y +++     +L      L+SGAK++T+DKRL   F LI+ V DP+GDL  +TGF++ +
Sbjct:  105 LLAYSDDPLGDLMFGANGVVVAGILAAFIAIGVGFVALVPKVGSA-------KFTLTEEEEETVYRVVNGFDSKPWEKELTEAGTKGYVNRRRQAVESKEAYQKGKLARDIKDKSLRYSEADLGFVACLLRAAQPLPGSVLVDLGSGCGRSTLGCATIFPDFSKCVGIEFLPELVTLANGYKSKVKG---KMASVEFRSGDFALE--DLSEADLVFVGPASYMSDK-----DLLPAFETLRSGAKIMTVDKRLGAGFALIAQVDDPSGDLVLNTGFVYTK 367
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A0G4EMU0_VITBC (DOT1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMU0_VITBC)

HSP 1 Score: 147 bits (372), Expect = 1.150e-36
Identity = 84/234 (35.90%), Postives = 140/234 (59.83%), Query Frame = 1 
Query:  331 KIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSARDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVDEVCDVTD-----VDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQGP-FNLISTVLDPNGDLQTSTGFLWQR 1014
            K  L++ E  AV     +YD++ + + +TE+G++G  +R+  A    +++ +GKDPREVRGKT++Y+E DL +LA +LR A+   G+ F+D+GSG G+AV+ A  LYP+   C G+E L+G    +KTY  ++    R    I+ +  +F       TD      D++FAY+ ++S +      EL   +   KSGA+++T+D++L    F LI T+ DP+GDL    G++++R
Sbjct:   66 KFVLSDSEAAAVSLVNGIYDASEEDKRMTERGSIGRTRRQLEADRIAEEFAEGKDPREVRGKTITYSEVDLNFLAVLLRAAEPKQGETFVDLGSGLGRAVLGAAALYPSFRKCTGIEYLQGRTDLAKTYVSRF----RSSPAIELMTDDFALPTSAKTDQAIQQADVLFAYSPRFSGK------ELLSTVEKAKSGARILTVDRKLASDGFELIKTLEDPSGDLNRYRGYVFRR 289
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BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A7R9UEU9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEU9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.420e-36
Identity = 80/179 (44.69%), Postives = 116/179 (64.80%), Query Frame = 1 
Query:  499 REVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFVQGEFVD----EVCD-VTDVDIVFAYATKYSTERGIYLTELSRKLLDL-KSGAKVITIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ 1017
            REVR KTL YAE DL +LA ++R  +   G+VFLD+GSG GKAV+ A  LYP+L+   G+EIL  L+R +K +ARK     +    +DF+  +F D    EV   +   DI+F YAT++++E  + LTE S  L +  K GA++I ID+RL+GPF L+  + D  GDLQ + G+++Q+Q
Sbjct:    1 REVRDKTLGYAEIDLAWLATLMRQVEPAAGEVFLDLGSGMGKAVLGAAALYPDLAKSAGIEILPKLNRRAKRFARKL----KTSVDLDFINSDFCDIDRREVAQTIGQADIIFLYATRFASESDV-LTEASAVLAECAKPGARIIAIDRRLRGPFRLVKEIDDLRGDLQLTRGYIYQKQ 174
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: D7G785_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G785_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.030e-24
Identity = 65/83 (78.31%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:  130 RRQGT--SMVMPAGSDISACAQLLLAYSDEATTAAKSVSQSVQLIGLAGVGTVGLFGVLASALKLPQAGKIELTEQEQEAVDA 372
            RRQ T  SMVMP  +DISA AQLLLAYSDEAT AAKSVS   Q+IG+AGVGTVGLFGVLASALKLP+AGKIELTE EQ+ V A
Sbjct:   27 RRQSTCTSMVMPDATDISAGAQLLLAYSDEATAAAKSVSGMEQMIGIAGVGTVGLFGVLASALKLPEAGKIELTEAEQDVVTA 109
[Close]
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Match: A0A1F7H087_9BACT (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_37_24 TaxID=1802037 RepID=A0A1F7H087_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-14
Identity = 48/145 (33.10%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:  505 VRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGTGKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAP-IDFVQGEFVDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVITIDKRLQ 936
            +  K+ +Y E D     K+L + +   G+VF D+GSGTGK V++A LL+P  S   G+EIL  LH  SK    ++  L  + A  ++F++ + +D   D T+ D+++  +T +STE   ++ +L++K+   K G ++IT+ K+ +
Sbjct:   32 INDKSYTYGEIDFESFKKILDITKPQAGEVFYDLGSGTGKPVISAALLFP-FSKLYGLEILNDLHELSKKILEEFEILYPDYADHVEFIKADLMDY--DFTNGDVIYIASTCFSTE---FMEKLTKKIELTKPGTRIITLTKKFK 170
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIT5_9STRA1.150e-6948.20DOT1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6V1MPI0_HETAK7.560e-6548.20Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S1XJM1_9STRA1.850e-5242.40Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D1A5_9STRA7.020e-4239.64DOT1 domain-containing protein n=3 Tax=Monodopsida... [more]
D7FM53_ECTSI6.720e-4092.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UU31_9STRA1.470e-3736.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0G4EMU0_VITBC1.150e-3635.90DOT1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7R9UEU9_9STRA3.420e-3644.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D7G785_ECTSI1.030e-2478.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1F7H087_9BACT1.520e-1433.10Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:660146..665731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue9.7e-13
Seed eggNOG ortholog215803.DB30_2484
KEGG rclassRC00003,RC00392,RC02120,RC03388,RC03390
KEGG koko:K11434,ko:K15984,ko:K20421
KEGG ReactionR10963,R11216,R11217,R11219
KEGG Pathwayko01059,ko01130,ko04068,ko04922,map01059,map01130,map04068,map04922
KEGG ModuleM00830
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs1NIU6@1224,2X4QK@28221,2YZEC@29,439F7@68525,COG2242@1,COG2242@2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010690.1
EC2.1.1.242,2.1.1.303,2.1.1.319
COG Functional cat.H
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036
Exons9
Model size1698
Cds size1002
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.7722974-UTR-C-linearis_contig88:660145..6601631622930686.7722974-UTR-C-linearis_contig88:660145..660163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 660146..660163 +
1690881196.96559-UTR-C-linearis_contig88:660145..6601631690881196.96559-UTR-C-linearis_contig88:660145..660163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 660146..660163 +
1622930686.9770992-UTR-C-linearis_contig88:665053..6657311622930686.9770992-UTR-C-linearis_contig88:665053..665731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 665054..665731 +
1690881197.0955215-UTR-C-linearis_contig88:665053..6657311690881197.0955215-UTR-C-linearis_contig88:665053..665731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 665054..665731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.7908616-CDS-C-linearis_contig88:660163..6602791622930686.7908616-CDS-C-linearis_contig88:660163..660279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 660164..660279 +
1690881196.980788-CDS-C-linearis_contig88:660163..6602791690881196.980788-CDS-C-linearis_contig88:660163..660279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 660164..660279 +
1622930686.8065689-CDS-C-linearis_contig88:661727..6617821622930686.8065689-CDS-C-linearis_contig88:661727..661782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 661728..661782 +
1690881196.996666-CDS-C-linearis_contig88:661727..6617821690881196.996666-CDS-C-linearis_contig88:661727..661782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 661728..661782 +
1622930686.8181922-CDS-C-linearis_contig88:662271..6624151622930686.8181922-CDS-C-linearis_contig88:662271..662415Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 662272..662415 +
1690881197.0112104-CDS-C-linearis_contig88:662271..6624151690881197.0112104-CDS-C-linearis_contig88:662271..662415Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 662272..662415 +
1622930686.8329043-CDS-C-linearis_contig88:662720..6628251622930686.8329043-CDS-C-linearis_contig88:662720..662825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 662721..662825 +
1690881197.0249488-CDS-C-linearis_contig88:662720..6628251690881197.0249488-CDS-C-linearis_contig88:662720..662825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 662721..662825 +
1622930686.8513465-CDS-C-linearis_contig88:663238..6633451622930686.8513465-CDS-C-linearis_contig88:663238..663345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 663239..663345 +
1690881197.037096-CDS-C-linearis_contig88:663238..6633451690881197.037096-CDS-C-linearis_contig88:663238..663345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 663239..663345 +
1622930686.8690538-CDS-C-linearis_contig88:663478..6636441622930686.8690538-CDS-C-linearis_contig88:663478..663644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 663479..663644 +
1690881197.0471327-CDS-C-linearis_contig88:663478..6636441690881197.0471327-CDS-C-linearis_contig88:663478..663644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 663479..663644 +
1622930686.8921459-CDS-C-linearis_contig88:664161..6642541622930686.8921459-CDS-C-linearis_contig88:664161..664254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664162..664254 +
1690881197.0608346-CDS-C-linearis_contig88:664161..6642541690881197.0608346-CDS-C-linearis_contig88:664161..664254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664162..664254 +
1622930686.9288664-CDS-C-linearis_contig88:664568..6646731622930686.9288664-CDS-C-linearis_contig88:664568..664673Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664569..664673 +
1690881197.074442-CDS-C-linearis_contig88:664568..6646731690881197.074442-CDS-C-linearis_contig88:664568..664673Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664569..664673 +
1622930686.948061-CDS-C-linearis_contig88:664942..6650531622930686.948061-CDS-C-linearis_contig88:664942..665053Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664943..665053 +
1690881197.0840962-CDS-C-linearis_contig88:664942..6650531690881197.0840962-CDS-C-linearis_contig88:664942..665053Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 664943..665053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16379.1prot_C-linearis_contig88.16379.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 660164..665053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16379.1

>prot_C-linearis_contig88.16379.1 ID=prot_C-linearis_contig88.16379.1|Name=mRNA_C-linearis_contig88.16379.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=334bp
MMRCLQFLSVACALDTASGFVLGGARIAGHRSAASSTRRQGTSMVMPAGS
DISACAQLLLAYSDEATTAAKSVSQSVQLIGLAGVGTVGLFGVLASALKL
PQAGKIELTEQEQEAVDAATLLYDSTPQLQELTEKGTVGEVKRRELAMSA
RDKYQKGKDPREVRGKTLSYAEFDLPYLAKMLRLAQLDDGDVFLDMGSGT
GKAVVAAGLLYPNLSVCRGVEILEGLHRESKTYARKYSGLGREKAPIDFV
QGEFVDEVCDVTDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGAKVIT
IDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ*
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mRNA from alignment at C-linearis_contig88:660146..665731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16379.1 ID=mRNA_C-linearis_contig88.16379.1|Name=mRNA_C-linearis_contig88.16379.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5586bp|location=Sequence derived from alignment at C-linearis_contig88:660146..665731+ (Chordaria linearis ClinC8C monoicous)
CGCTTTCGGTCAACTACCATGATGAGGTGTCTCCAGTTCCTGAGCGTTGC
TTGTGCGCTCGACACCGCATCTGGCTTCGTCCTTGGTGGTGCACGCATCG
CTGGACACCGTAGCGCTGCGTCTTCGACACGAAGGTGTGTACTGGTGCCT
TGCTGTGGCCAGCTGTTTCTGCTGAGTGAGCTGGCTTTCACACCGCTGTG
AAACCCACGTGTTGATGGCAAGTTCACAGCTTTTGTGCGCGAGTTTTGAG
GGTTTATGGCAGTGTTTTTCAGAGCCTGAGAGAGAGGAGGAGGAGGCTAG
CGCGGCATTCGTACACTTGGCTGCTGCGTTTAGACAGGATCCATGACCAA
AACATGACACCAGGGAGTGGTATCGATGTGGCGGTGTTCTGTACGTGGGA
ACACGTATCTCTGCTCTGCGCTGGCTTAGGGGTACGTTGCCGTATCATGG
ATGCCAAGGCTATGTAAAGTGACGAAACACGCAGGTAGGCAAAACAGAAA
AAGATAGCTGGTACACTCTCCTGCTGCGGCATCTATGCGGCCCCGGCAAG
ATGTGGTGGTGTGTGGAAACAAACGTTCTCCGATATCTAGACTAAATCGT
CTACGGTACAAGTTAGCACCAATAGTCTGCAGCGTCGATGTATGTACAGC
GGTGAGGTTAAACTACGTTCGACTTGTGCGTTGTGTGTTTCTGGAGAGAG
GCGAACACACCTATCTATCTCCTGGGGAGCCAGAGCTGTCGCGGAGCGGG
CTGTACTGCTGTACACAGGCGTAGACGGGGCTCTTGAAGGGAGCAACGAT
TTGGTTGCTGTGATCCAAGCACCCCGTGTAACCTCGCCCGCGGTGGTTCA
TGTGTCACGGGTACACTTCCCTCCGCTGTGTAGAAGACACGAGCATCATA
CGAAGTCGAGCTCTGGACGAAAACCACTCCCCAGGCAGTGGCACTAAAAC
ATACGGGAACCGTTCCCCCGCCTCTTGAGAAAATGCCGCCATCATTTGGC
GCTAAAAATATCGCTGTTGTTGAAATTACTGCCTTGGACACCCCTATCTT
GTAGTCTAGAGCCGGGTCGCCCCGGTGGACTAGTGGTTTAACCTCGAACC
CACTAGCAGCAAAGTCTGGAGTTCAATTCCAAGCAAAGGTGTTTCTTTTG
CGACTTTGCAGGTGAAAGCGATAAAATAGCTGAAAAAGCTCGTGAGTACC
AAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCACCCTTCT
CGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAG
AAACAGAAAAAGAAGAAAAAGCCCCAGTGTTTACCCCCTCCTGTGTGACC
CCGGTTGGTTCTAGTTGTACAGAAAAATACACTCAACAAGTGCAGTACTC
TAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGGAC
TGTCGCCAAAATAAATGGGACGAAAACACACACACACACATGCACCCCAC
ACAGACTTTTTTTATCTCTCTGAAATCTTTTGTTCCCCTGCGATTGTATC
TATCAATCCTGCGTGCTTGTGGTTATTTGCAGACAAGGCACGTCGATGGT
AATGCCAGCTGGCTCGGACATTTCAGCGTGTGCTCAGGTACGACAGTAGA
ACAGCTGGCTAGAGGGAGAGAGAGAGACAAGCGTCGATCTCGCCGTTGGG
AGATACACGTGAGTGCCAAGTTCAGAGTTACCCAACCCTGCTGTGGGAAC
AGCAGGGCTCCTTGCAGAAAATGCTACGTTCCACTGTGATTCCATGCAGT
GTTACCCGGGGGGGTGAGATTTAATTCTGGCCCATTCTGCCCCCCACGGC
TGCCCTGCTGCAGCCACTGCTGTATCATCCTAGATTTGGACTGTTCACAT
CGTAGTCTACAAGCATCCACATTCCCCCAGCTTTCCGCACGCGTAAACGT
GAGGCATAGATCGATTGTAAGTCGGCTCGCCACCGCCTACATCTACATCG
CCATCCAGAGAACCACGCACAACGTGCCAACGCTTCCTTCCCCGTGCTCT
GTTTCGATGCCATCGCTTCCCCCCCTCCACCCACCCCTGCTTCTTTCGAT
CTTGTCTTCTTTGCCGTCGTGTTCAGCTTTTGCTGGCCTACTCGGATGAA
GCCACAACAGCGGCCAAGTCCGTCTCTCAGAGCGTGCAGCTAATTGGTCT
GGCGGGCGTGGGAACCGTGGGTCTGTTCGGGGTGCTAGCGTCGGCGCTGA
AGCTGCCGCAAGCCGGGAAGGTAAGGGAAAGAGGGAGGGAGTGGGCCGGG
TCGGTCGTTGCCGGTTTTGTCTCCTGGATGGACTGCTGGAAAACAGGCCT
CACCTCGACAGGCGACATTCCTGTTGTGTTGCGTTCTCCTCGAGCACACG
TTTACGACTCTGTGTCGGGAGAACAAGAAAGGATGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCACGCACGTTCCAGCTTACAGGAGGAGGGTGCCTTCT
TCGCCTCTATTCTTATCCCCTGTGCTTTTTGCCTGTGTGCGATTCTGTCT
ATCTGTCTGTCTGTCGAACGAGCAGATCGAGCTTACGGAACAAGAGCAAG
AGGCCGTGGACGCGGCGACTCTCCTGTATGATTCCACCCCTCAGCTCCAG
GAGCTGACAGAGAAAGGAACGGTGGGAGAGGTGAGAGAGGAGCAGCAGGG
GCAGCGGTGTCTCGTGAAGGTTTTGCGTCGATCTCGTTTTGTCGCGAAAT
TTAGACTTCGGCAGCGACGCAAACCTTCTCACTTATATCGATGTACTTCG
ATGTACTTCGAGTGACGGTAGTGGCCGCAGGAGGGAAGCCATGAAGTCCT
TTGGTGTGTGATTTTCGAGAGCAATGTCCCCTTTTTATCGCCGCAAAATC
GTGATTTCATTTCCGTCGGCGGTAGCCCTTCACCTGACGTTAATCAACAT
AACCGACAAGAAACCCACACCCACTCACACGTGAAACGTCGAACACTCTG
ACACCGCAGCGGACTACTGTTGATGGACCGAAACGTCTAGCTGTCTAGCT
AGCATTCTCACGGCAATCCCCTGCACCCCCCGGCATGGCACAGGTGAAGC
GGAGGGAGCTGGCCATGTCTGCCCGCGACAAGTACCAGAAGGGGAAGGAC
CCAAGAGAAGTGCGTGGGAAGACGTTGTCCTACGCCGAGTTCGACCTGCC
GTGAGTCCAGTCCAGTCCAGTTCGGTCGCGTCGAGTTTGCCAGATTTTAG
CAATAATGCCCGTGACCGCCCGCACGAAATTGGAAGAAGAGAGGATATCC
AAACGCGAACCATACACGGAAACACGCACACAGGTACCTGGCGAAGATGC
TCCGGTTGGCCCAGCTCGATGACGGCGATGTGTTCTTGGACATGGGCTCG
GGAACGGGCAAGGCAGTGGTGGCGGCGGGGTTGCTCTACCCTAACCTGTC
GGTGTGCCGCGGCGTAGAGATTCTTGAGGGCTTGCACCGGGAATCAAAGG
TGTGTGTGTGATGTGTGGGTGTGGGTGTCCACCTGCACGTGTTGGTGGTG
GACCTGTTCGATTTTTGGTGGGGGATTTTGTCCCTGAACTGTACCTTTTT
GGTGGATGTACTGACCCTTGGGGTCCGTTTTATTTTTCAGTCTACCTTTT
TAGGTAAGTTAGCTTGTGACCACGGAAATTGGCCGCGTCAAGTGATGGAT
AAGTACGGAGAAGTTGAGACAGAAGGAGGTACTGGATAGAGACGAGACCG
GGATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACA
ACAACAACATCAACAACAGCAACAACAACATGTGGATTGTTGTGTTGGGT
GGTCTTAGCTCGACTGACTGACTGCAAGTAAAATAGTATACCAGCCTAGT
GTTTCGGCTGAGTTGCGGCTTCTCCCTCTGTCTCTCTCTTTATCTCTCCG
CTCTCTTCACACCTTCCGTTTGTTTTTCCTTCTGCCTTCGCTGCATGTTG
CGACTGGTTGCGGTAGACGTACGCAAGAAAGTACAGCGGGCTGGGTCGGG
AGAAGGCACCGATCGATTTCGTGCAGGGAGAGTTCGTGGATGAGGTGTGC
GACGTTACGGTAAGCCTTGACCGTTTTTTTTGTTCCTTTTAGCGCACCAG
TCGGGCCCATCTCGTCTGTTTTCCTCATTGTTGCTGTTGTTGCTGTTGTT
GTTGCAATTGCTGGTGGTGGTGGTGGTGGTGGGGCTCCTGTTGGTTGTCT
CCACACTAGAAAGGCTGTTCCGACTTTCATCCAGTACGACGCCTTCCGCG
TTGATCCATCCAGGGACCTGCAATTGCACACGCCTGTCCTCTTTCTGCGT
TTCAACTGCACCCTCTGCGTTTCAACTGCACCCTCTGCGTCACGTCAAAC
CTTCTATGCTTTTTCGGTCGCAGGACGTCGACATCGTGTTTGCGTACGCG
ACCAAATACTCAACCGAGCGAGGCATCTACCTCACGGAATTGTCTAGGAA
GCTTCTCGACCTCAAGTCCGGCGCGAAGGTGGCAGTGAAGTTTCAGTACG
CGGGAGCCCACCTGTGGCGGTGGGGTTATCAGCCAAAAAAACTTGTTGAA
ATCTATCGTTGCGTTCTGTAACCTGTTGTTGCTAAGACGATTTCAAGGCT
AAATTAGCAGAAATACCTCCCAGGAGAATCTCCAGGGGAAACGTTCCATC
TGCTTTCGGTAATGCTTCCAAGCGCGTTGTTCCTTCTCACCGGCGTAGAA
ATCCAGTCTCCTTCACCATCCTCTTGATATTTTGCTTTTCTTTTCAGGTG
ATCACCATCGACAAGCGCCTTCAGGGGCCGTTCAACTTAATCTCGACGGT
CCTCGACCCAAATGGTGACTTGCAGACCTCCACAGGGTTTCTGTGGCAGC
GTCAGTGAACCGATAGTCTAGCCCGTTTAAGTTGCCTCAACAGCATTCTA
CCACATCAACGTTTGGGTTGTTCACAAAGGGAGGTTCGTTTATGCTTTAG
AACCACCGCCGGTCCTTCAGGTTAGGCTGCGGGGCGAACTATTGATACTC
GCTTCTTCCGATTTCCGGTTAAATGTTTTTTTTTGGGTGGGGGAGGAGTG
GTACGATGCTGGTCTTCATTCCAGGAGCACGAGCAAGATACTTGCGTGAA
GGTACTTGCGTGAACTGAGCTAAAACTACAGTAGGAAGCAGTTTTGGTTG
GTGTTTGGTTGTTACTGTTTCGCGGGGCACGTGCGCCCACGTAATTGTTA
CTTAAGATTCCATACGGCCTGTCCGCATGCCTGCGGCCGCGGTTGCTTCT
CGGAAGAGGAACTTCGCGCGAAATTGGGTGAGGCCCGTTGGACACATAGC
GCTAAGGCAAGCGGAACCCGGACAGCACCCAAAAAGAGAAGACCAACTCG
GAGGTGAGGATGGCGTCTCACAGCTTGCCGAACGCATTTCGCGCGTGTCA
CGACTGTATTTGACGCCTCAGCGCGGCGGTGGGAATAGAAGCTGCGCTGG
AGGCTAAATTACCCTGAAAACGAGGAATTCAGCGCCTACACGGACTTGCC
AGCCTCGGCCGCAGTCCAGCTCGTCTGCAAGTTCAG
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Coding sequence (CDS) from alignment at C-linearis_contig88:660146..665731+

>mRNA_C-linearis_contig88.16379.1 ID=mRNA_C-linearis_contig88.16379.1|Name=mRNA_C-linearis_contig88.16379.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at C-linearis_contig88:660146..665731+ (Chordaria linearis ClinC8C monoicous)
ATGATGAGGTGTCTCCAGTTCCTGAGCGTTGCTTGTGCGCTCGACACCGC
ATCTGGCTTCGTCCTTGGTGGTGCACGCATCGCTGGACACCGTAGCGCTG
CGTCTTCGACACGAAGATGATGAGGTGTCTCCAGTTCCTGAGCGTTGCTT
GTGCGCTCGACACCGCATCTGGCTTCGTCCTTGGTGGTGCACGCATCGCT
GGACACCGTAGCGCTGCGTCTTCGACACGAAGACAAGGCACGTCGATGGT
AATGCCAGCTGGCTCGGACATTTCAGCGTGTGCTCAGACAAGGCACGTCG
ATGGTAATGCCAGCTGGCTCGGACATTTCAGCGTGTGCTCAGCTTTTGCT
GGCCTACTCGGATGAAGCCACAACAGCGGCCAAGTCCGTCTCTCAGAGCG
TGCAGCTAATTGGTCTGGCGGGCGTGGGAACCGTGGGTCTGTTCGGGGTG
CTAGCGTCGGCGCTGAAGCTGCCGCAAGCCGGGAAGCTTTTGCTGGCCTA
CTCGGATGAAGCCACAACAGCGGCCAAGTCCGTCTCTCAGAGCGTGCAGC
TAATTGGTCTGGCGGGCGTGGGAACCGTGGGTCTGTTCGGGGTGCTAGCG
TCGGCGCTGAAGCTGCCGCAAGCCGGGAAGATCGAGCTTACGGAACAAGA
GCAAGAGGCCGTGGACGCGGCGACTCTCCTGTATGATTCCACCCCTCAGC
TCCAGGAGCTGACAGAGAAAGGAACGGTGGGAGAGATCGAGCTTACGGAA
CAAGAGCAAGAGGCCGTGGACGCGGCGACTCTCCTGTATGATTCCACCCC
TCAGCTCCAGGAGCTGACAGAGAAAGGAACGGTGGGAGAGGTGAAGCGGA
GGGAGCTGGCCATGTCTGCCCGCGACAAGTACCAGAAGGGGAAGGACCCA
AGAGAAGTGCGTGGGAAGACGTTGTCCTACGCCGAGTTCGACCTGCCGTG
AAGCGGAGGGAGCTGGCCATGTCTGCCCGCGACAAGTACCAGAAGGGGAA
GGACCCAAGAGAAGTGCGTGGGAAGACGTTGTCCTACGCCGAGTTCGACC
TGCCGTACCTGGCGAAGATGCTCCGGTTGGCCCAGCTCGATGACGGCGAT
GTGTTCTTGGACATGGGCTCGGGAACGGGCAAGGCAGTGGTGGCGGCGGG
GTTGCTCTACCCTAACCTGTCGGTGTGCCGCGGCGTAGAGATTCTTGAGG
GCTTGCACCGGGAATCAAAGGTACCTGGCGAAGATGCTCCGGTTGGCCCA
GCTCGATGACGGCGATGTGTTCTTGGACATGGGCTCGGGAACGGGCAAGG
CAGTGGTGGCGGCGGGGTTGCTCTACCCTAACCTGTCGGTGTGCCGCGGC
GTAGAGATTCTTGAGGGCTTGCACCGGGAATCAAAGACGTACGCAAGAAA
GTACAGCGGGCTGGGTCGGGAGAAGGCACCGATCGATTTCGTGCAGGGAG
AGTTCGTGGATGAGGTGTGCGACGTTACGACGTACGCAAGAAAGTACAGC
GGGCTGGGTCGGGAGAAGGCACCGATCGATTTCGTGCAGGGAGAGTTCGT
GGATGAGGTGTGCGACGTTACGGACGTCGACATCGTGTTTGCGTACGCGA
CCAAATACTCAACCGAGCGAGGCATCTACCTCACGGAATTGTCTAGGAAG
CTTCTCGACCTCAAGTCCGGCGCGAAGGACGTCGACATCGTGTTTGCGTA
CGCGACCAAATACTCAACCGAGCGAGGCATCTACCTCACGGAATTGTCTA
GGAAGCTTCTCGACCTCAAGTCCGGCGCGAAGGTGATCACCATCGACAAG
CGCCTTCAGGGGCCGTTCAACTTAATCTCGACGGTCCTCGACCCAAATGG
TGACTTGCAGACCTCCACAGGGTTTCTGTGGCAGCGTCAGTGAGTGATCA
CCATCGACAAGCGCCTTCAGGGGCCGTTCAACTTAATCTCGACGGTCCTC
GACCCAAATGGTGACTTGCAGACCTCCACAGGGTTTCTGTGGCAGCGTCA
GTGA
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