mRNA_C-linearis_contig88.16378.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16378.1
Unique NamemRNA_C-linearis_contig88.16378.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig88.16378.1 vs. uniprot
Match: A0A6H5JVZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ4_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 3.010e-92
Identity = 153/200 (76.50%), Postives = 162/200 (81.00%), Query Frame = 3 
Query:    3 VGPSKWLAVHGPDAAGAAEYYRAKAIAIDLPV*IHQGRFHGHLERGAEGVIESFVADWRKIRHGFDGVLFVGYDRKDIVTLIKDREQAERTRAARESGVVFDRRPKTPIMPSDFNSWLRRSGKAARDGIADALATISLAENEVTWTGPN-RRKGITAFYGVEAGDEPGATSGGGMDPDGSAAEGTGAPADASQVPLLHIR 599
            VGPS+WLA H PDAAG AEYY AKAIAIDLPV IHQGRF  H+E GA+GVIESFVAD RKIRHGFDGVLFVGYDRKD+V LIKDREQA RTRAA ES   FD R  TPIMP+ + SWLR+ GK ARDGIADALA  SL ENE  WTGP+ RRKGITAFYGVEAG  P +TSGG M  DGS  EGTGA AD SQVPLLHIR
Sbjct:   14 VGPSRWLAAHCPDAAGDAEYYEAKAIAIDLPVWIHQGRFALHMEGGAKGVIESFVADLRKIRHGFDGVLFVGYDRKDLVALIKDREQAGRTRAAGESDAAFDHRSATPIMPTGYQSWLRQDGKVARDGIADALADASLRENEEKWTGPHQRRKGITAFYGVEAGGVPSSTSGGRMGADGSPTEGTGATADESQVPLLHIR 213
[Close]
BLAST of mRNA_C-linearis_contig88.16378.1 vs. uniprot
Match: A0A6H5K590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K590_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.810e-11
Identity = 62/162 (38.27%), Postives = 72/162 (44.44%), Query Frame = 3 
Query:  204 VLFVGYDRKDIVTLIKDREQAERTRAARESGVVFDRRPKTPIMPSDFNSWLRRSGKAARDGIADALATISLAENEVTWTGPNRRKGITAFYGV--EAG------DEPGATSGGGMD-----------PDGSAAEGT-----------GAPADASQVPLLHIR 599
            +L V YDR  +V  IK REQ+ RT       + FD      I PS + SWLR S KAARDGIA  LA     +    WTG     G+ AFYGV  EAG        P  +SGGG+            P GS    T           G P  A + PLLH R
Sbjct:    5 LLLVCYDRAPLVPAIKGREQSGRTDKIGGYPLSFDPTSTDAIPPSQYQSWLRDSQKAARDGIAAHLAVDIFDDKR--WTGDCTPNGVVAFYGVGGEAGLRTSDAANPAVSSGGGVQGGPATSPEIPAPVGSVENSTVRSGGDGTEEGGVPTVAKEDPLLHYR 164
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVZ4_9PHAE3.010e-9276.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K590_9PHAE1.810e-1138.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:654776..655374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.6999137-UTR-C-linearis_contig88:654775..6551041622930686.6999137-UTR-C-linearis_contig88:654775..655104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 654776..655104 +
1690881196.943106-UTR-C-linearis_contig88:654775..6551041690881196.943106-UTR-C-linearis_contig88:654775..655104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 654776..655104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.717812-CDS-C-linearis_contig88:655104..6553741622930686.717812-CDS-C-linearis_contig88:655104..655374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 655105..655374 +
1690881196.9540122-CDS-C-linearis_contig88:655104..6553741690881196.9540122-CDS-C-linearis_contig88:655104..655374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 655105..655374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16378.1prot_C-linearis_contig88.16378.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 655105..655374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16378.1

>prot_C-linearis_contig88.16378.1 ID=prot_C-linearis_contig88.16378.1|Name=mRNA_C-linearis_contig88.16378.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=90bp
MPSDFNSWLRRSGKAARDGIADALATISLAENEVTWTGPNRRKGITAFYG
VEAGDEPGATSGGGMDPDGSAAEGTGAPADASQVPLLHIR
back to top

mRNA from alignment at C-linearis_contig88:654776..655374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16378.1 ID=mRNA_C-linearis_contig88.16378.1|Name=mRNA_C-linearis_contig88.16378.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at C-linearis_contig88:654776..655374+ (Chordaria linearis ClinC8C monoicous)
CCGTGGGACCGTCAAAGTGGCTGGCAGTACACGGCCCGGACGCAGCCGGG
GCAGCGGAGTACTACAGGGCCAAAGCTATCGCTATCGACCTGCCGGTTTG
AATTCACCAAGGCAGATTTCACGGTCACCTGGAGCGGGGTGCGGAGGGGG
TAATCGAGAGCTTCGTGGCTGATTGGCGCAAGATCAGACACGGGTTCGAC
GGAGTGCTTTTCGTCGGTTACGACCGCAAGGATATTGTCACATTGATCAA
GGACCGGGAACAGGCGGAGAGGACAAGGGCCGCGCGGGAGAGTGGTGTGG
TTTTCGATCGTCGTCCGAAGACTCCGATCATGCCGTCCGATTTTAATTCG
TGGCTCCGACGGTCCGGCAAGGCAGCACGAGATGGCATCGCCGACGCTCT
CGCGACGATCTCCCTGGCAGAGAATGAGGTAACGTGGACTGGACCCAACC
GACGGAAGGGGATCACCGCGTTTTACGGTGTCGAAGCCGGAGATGAGCCC
GGAGCGACATCGGGCGGTGGCATGGATCCTGATGGGAGCGCCGCAGAGGG
AACGGGTGCGCCAGCTGACGCGAGCCAGGTTCCGCTCCTACACATCCGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig88:654776..655374+

>mRNA_C-linearis_contig88.16378.1 ID=mRNA_C-linearis_contig88.16378.1|Name=mRNA_C-linearis_contig88.16378.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at C-linearis_contig88:654776..655374+ (Chordaria linearis ClinC8C monoicous)
ATGCCGTCCGATTTTAATTCGTGGCTCCGACGGTCCGGCAAGGCAGCACG
AGATGGCATCGCCGACGCTCTCGCGACGATCTCCCTGGCAGAGAATGAGG
TAACGTGGACTGGACCCAACCGACGGAAGGGGATCACCGCGTTTTACGGT
GTCGAAGCCGGAGATGAGCCCGGAGCGACATCGGGCGGTGGCATGGATCC
TGATGGGAGCGCCGCAGAGGGAACGGGTGCGCCAGCTGACGCGAGCCAGG
TTCCGCTCCTACACATCCGTATGCCGTCCGATTTTAATTCGTGGCTCCGA
CGGTCCGGCAAGGCAGCACGAGATGGCATCGCCGACGCTCTCGCGACGAT
CTCCCTGGCAGAGAATGAGGTAACGTGGACTGGACCCAACCGACGGAAGG
GGATCACCGCGTTTTACGGTGTCGAAGCCGGAGATGAGCCCGGAGCGACA
TCGGGCGGTGGCATGGATCCTGATGGGAGCGCCGCAGAGGGAACGGGTGC
GCCAGCTGACGCGAGCCAGGTTCCGCTCCTACACATCCGT
back to top