mRNA_C-linearis_contig88.16336.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16336.1
Unique NamemRNA_C-linearis_contig88.16336.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: D7FM69_ECTSI (Ribosomal_S10 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.060e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 363
            MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF
Sbjct:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 121          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A835YYK1_9STRA (Ribosomal protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.500e-62
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS++ K K +  EE+RVHRIRITLTS+NVKNLEKVCADLK GAV+ +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+
Sbjct:    1 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 119          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A397FH44_9STRA (Ribosomal_S10 domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.780e-62
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            K  G   EE+R+HRIRITLTS+NVKNLEKVCADLKKGAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTIAD+
Sbjct:   26 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADS 139          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: G4YYZ2_PHYSP (Ribosomal_S10 domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: H3GAS8_PHYRM (Ribosomal_S10 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A329RI77_9STRA (Ribosomal_S10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.710e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITLTS+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   47 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 166          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A421F2P5_9STRA (Ribosomal_S10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.890e-60
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKV+GPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   37 KPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 151          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A6U5GMR1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.620e-59
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    4 SAYVKGKGLG---QEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            S Y   K LG   + +A+VHRIRITLTS+NVKNLEKVCADLK+GA++KKLKVSGPVRLPTKKL I TRK+P GEGTNTWDRFEMRIHKR++DLHSP+EIVK+ITSISIEPGVEVEVT+AD
Sbjct:    3 SGYPPKKELGGIVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A7S0I5H7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I5H7_9EUKA)

HSP 1 Score: 186 bits (473), Expect = 6.630e-59
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    4 SAYVKGKGLGQEEA--RVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            +A +K K L ++ A  +VHRIRITLTS+NVKNLEKVCADL +GA EK+LKV GPVRLPTK L+I TRKSPCGEGTNTWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIAD
Sbjct:   10 AAALKSKALDEDPAAAKVHRIRITLTSRNVKNLEKVCADLIRGAKEKRLKVKGPVRLPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 128          
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Match: A0A6P8HBZ6_ACTTE (40S ribosomal protein S20 n=6 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8HBZ6_ACTTE)

HSP 1 Score: 185 bits (470), Expect = 1.380e-58
Identity = 94/120 (78.33%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MSAYVKGKG-LGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS+  K KG + +EE ++HRIRITLTS+NVK+LEKVCADL +GA EKKLKV GPVR+PTK LKI TRK+PCGEG+ TWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIADA
Sbjct:    1 MSSLYKEKGAVPEEEVQIHRIRITLTSRNVKSLEKVCADLIRGAKEKKLKVKGPVRMPTKYLKITTRKTPCGEGSKTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM69_ECTSI1.060e-78100.00Ribosomal_S10 domain-containing protein n=3 Tax=Eu... [more]
A0A835YYK1_9STRA1.500e-6282.35Ribosomal protein S10 domain-containing protein n=... [more]
A0A397FH44_9STRA5.780e-6285.09Ribosomal_S10 domain-containing protein n=8 Tax=Sa... [more]
G4YYZ2_PHYSP2.490e-6180.00Ribosomal_S10 domain-containing protein n=7 Tax=Oo... [more]
H3GAS8_PHYRM2.490e-6180.00Ribosomal_S10 domain-containing protein n=9 Tax=Eu... [more]
A0A329RI77_9STRA2.710e-6180.83Ribosomal_S10 domain-containing protein n=11 Tax=P... [more]
A0A421F2P5_9STRA7.890e-6080.87Ribosomal_S10 domain-containing protein n=3 Tax=Ph... [more]
A0A6U5GMR1_9STRA2.620e-5979.17Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0I5H7_9EUKA6.630e-5979.83Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6P8HBZ6_ACTTE1.380e-5878.3340S ribosomal protein S20 n=6 Tax=Hexacorallia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:134759..135524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.5e-59
Seed eggNOG ortholog2880.D7FM69
KEGG koko:K02969
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0051@1,KOG0900@2759
Ec32 ortholog descriptionRibosomal protein S10, eukaryotic/archaeal
Ec32 orthologEc-16_004860.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.6982725-CDS-C-linearis_contig88:134758..1348611622930677.6982725-CDS-C-linearis_contig88:134758..134861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 134759..134861 +
1690881191.80084-CDS-C-linearis_contig88:134758..1348611690881191.80084-CDS-C-linearis_contig88:134758..134861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 134759..134861 +
1622930677.719533-CDS-C-linearis_contig88:135261..1355241622930677.719533-CDS-C-linearis_contig88:135261..135524Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 135262..135524 +
1690881191.813683-CDS-C-linearis_contig88:135261..1355241690881191.813683-CDS-C-linearis_contig88:135261..135524Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 135262..135524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16336.1prot_C-linearis_contig88.16336.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 134759..135524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16336.1

>prot_C-linearis_contig88.16336.1 ID=prot_C-linearis_contig88.16336.1|Name=mRNA_C-linearis_contig88.16336.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKV
SGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKE
ITSISIEPGVEVEVTIADAAF*
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mRNA from alignment at C-linearis_contig88:134759..135524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16336.1 ID=mRNA_C-linearis_contig88.16336.1|Name=mRNA_C-linearis_contig88.16336.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at C-linearis_contig88:134759..135524+ (Chordaria linearis ClinC8C monoicous)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCGCGGGT GCACCGCATCCGCATCACCCTCACCTCCAAGAACGTCAAGAACCTCGAGA AGGGTGAGCCAGAGAGCTCTTGCTGCTGGCACAAAAATGCAAGGGATATC TAATACTCCGGAGTATATACTAGATGCTGCAAGTTGCCGTTGGCCTGTGG TGGACATCTCTTGATTCCTGCTCCCCCTATCGCGTACTAAACGTCCTCGA AATTGCCGCTGCCACTCCTGCACAGCCTTACAGGAGTGCAGGTATACCCA CCTGTAGCTACTATTTTAGCAAAGTTGTGCGGCTCTTGCCTGTAGCTGAT AGTTGTGTGTGGCTGCCTGTAACTGCTGCGTATCTGCTGTAACAGTTGTA TGTAGTATACCAAGTAGCTGCCTGCGTCTATTTTCTAACGTTCCACCATG TGTGCAACTGCTGCTGCTGCTGCTGCAACTCGACATCTCGTGGCCGGCCG CAGTGTGCGCGGATCTGAAGAAGGGAGCGGTCGAGAAGAAGCTTAAGGTG TCCGGCCCCGTGCGCCTGCCCACCAAGAAGCTCAAGATCGTGACCCGCAA GTCGCCCTGCGGAGAGGGGACCAACACCTGGGACCGATTCGAGATGCGCA TCCACAAGCGCATCCTCGACCTCCACTCCCCCTCGGAGATCGTCAAGGAG ATCACTTCCATCTCCATCGAGCCCGGAGTTGAGGTCGAAGTCACCATCGC GGACGCGGCCTTCTAG
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Coding sequence (CDS) from alignment at C-linearis_contig88:134759..135524+

>mRNA_C-linearis_contig88.16336.1 ID=mRNA_C-linearis_contig88.16336.1|Name=mRNA_C-linearis_contig88.16336.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig88:134759..135524+ (Chordaria linearis ClinC8C monoicous)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCGCGGGT
GCACCGCATCCGCATCACCCTCACCTCCAAGAACGTCAAGAACCTCGAGA
AGGATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCGCG
GGTGCACCGCATCCGCATCACCCTCACCTCCAAGAACGTCAAGAACCTCG
AGAAGGTGTGCGCGGATCTGAAGAAGGGAGCGGTCGAGAAGAAGCTTAAG
GTGTCCGGCCCCGTGCGCCTGCCCACCAAGAAGCTCAAGATCGTGACCCG
CAAGTCGCCCTGCGGAGAGGGGACCAACACCTGGGACCGATTCGAGATGC
GCATCCACAAGCGCATCCTCGACCTCCACTCCCCCTCGGAGATCGTCAAG
GAGATCACTTCCATCTCCATCGAGCCCGGAGTTGAGGTCGAAGTCACCAT
CGCGGACGCGGCCTTCTAGTGTGCGCGGATCTGAAGAAGGGAGCGGTCGA
GAAGAAGCTTAAGGTGTCCGGCCCCGTGCGCCTGCCCACCAAGAAGCTCA
AGATCGTGACCCGCAAGTCGCCCTGCGGAGAGGGGACCAACACCTGGGAC
CGATTCGAGATGCGCATCCACAAGCGCATCCTCGACCTCCACTCCCCCTC
GGAGATCGTCAAGGAGATCACTTCCATCTCCATCGAGCCCGGAGTTGAGG
TCGAAGTCACCATCGCGGACGCGGCCTTCTAG
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