mRNA_C-linearis_contig87.16315.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16315.1
Unique NamemRNA_C-linearis_contig87.16315.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16315.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.400e-5
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   46 HFPEHLGSRGMVVDCHAGESRFKSFKSHDKTASSRDNELH 165
            HF ++    G + DCHAGESR KSFKS  KTAS RDNE H
Sbjct:  756 HFAKNATDYGELSDCHAGESRHKSFKSCAKTASGRDNEEH 795
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWW6_ECTSI2.400e-562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:699383..699721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.8422654-CDS-C-linearis_contig87:699384..6994781622930673.8422654-CDS-C-linearis_contig87:699384..699478Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 699385..699478 -
1690881189.8299332-CDS-C-linearis_contig87:699384..6994781690881189.8299332-CDS-C-linearis_contig87:699384..699478Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 699385..699478 -
1622930673.8684287-CDS-C-linearis_contig87:699650..6997211622930673.8684287-CDS-C-linearis_contig87:699650..699721Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 699651..699721 -
1690881189.8415267-CDS-C-linearis_contig87:699650..6997211690881189.8415267-CDS-C-linearis_contig87:699650..699721Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 699651..699721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16315.1prot_C-linearis_contig87.16315.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 699385..699721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16315.1

>prot_C-linearis_contig87.16315.1 ID=prot_C-linearis_contig87.16315.1|Name=mRNA_C-linearis_contig87.16315.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=55bp
RQGWGKALQQPPGTAHFPEHLGSRGMVVDCHAGESRFKSFKSHDKTASSR
DNELH
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mRNA from alignment at C-linearis_contig87:699383..699721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16315.1 ID=mRNA_C-linearis_contig87.16315.1|Name=mRNA_C-linearis_contig87.16315.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at C-linearis_contig87:699383..699721- (Chordaria linearis ClinC8C monoicous)
CGACAGGGATGGGGCAAGGCTCTGCAGCAACCACCAGGGACTGCACATTT
CCCAGAACATCTGGGATCTCGGTAAGAATGCGGCGATACATGCCGTGCGA
GGGGTGGGGTGTTGGGTCCTCCCGTGTGATCCATCGCGCTGTACTCTGAC
TACTGTGTCAACACACAGTTTTCGCTGAAATACCACCCTGTCGACCCTCC
TCCTCACACGCTCTGGTTTCCCTTTCGTGGTGCCCGTCCGTAGAGGCATG
GTTGTCGACTGCCACGCGGGTGAGTCGCGGTTCAAGTCCTTCAAGTCGCA
CGACAAAACGGCGAGTAGCAGGGATAACGAGCTTCACAT
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Coding sequence (CDS) from alignment at C-linearis_contig87:699383..699721-

>mRNA_C-linearis_contig87.16315.1 ID=mRNA_C-linearis_contig87.16315.1|Name=mRNA_C-linearis_contig87.16315.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at C-linearis_contig87:699383..699721- (Chordaria linearis ClinC8C monoicous)
CGACAGGGATGGGGCAAGGCTCTGCAGCAACCACCAGGGACTGCACATTT
CCCAGAACATCTGGGATCTCGCGACAGGGATGGGGCAAGGCTCTGCAGCA
ACCACCAGGGACTGCACATTTCCCAGAACATCTGGGATCTCGAGGCATGG
TTGTCGACTGCCACGCGGGTGAGTCGCGGTTCAAGTCCTTCAAGTCGCAC
GACAAAACGGCGAGTAGCAGGGATAACGAGCTTCACAGGCATGGTTGTCG
ACTGCCACGCGGGTGAGTCGCGGTTCAAGTCCTTCAAGTCGCACGACAAA
ACGGCGAGTAGCAGGGATAACGAGCTTCAC
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