mRNA_C-linearis_contig87.16314.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16314.1
Unique NamemRNA_C-linearis_contig87.16314.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5K165_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K165_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.830e-21
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F VPGV Y+CGEQ+MMSE A+L  D +   + MAT+  + H+ LGRK R FD+AEWERRRE+ VLT
Sbjct:  340 WKPPSVFSQWTPSAFDVPGVRYSCGEQFMMSEKAKLFGDMTSYDKIMATTDRKTHKFLGRKVRPFDYAEWERRREEIVLT 419
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5KMH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.570e-21
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQYMMSENA+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:  257 WKPPSVFSQWTPSAFDVLGVRYSCGEQYMMSENAKLFGDMTSYEKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 336
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5KFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.960e-20
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLTV 243
            WKPP   S  TP  F+V G+ Y CGEQ+MM+E AR+  D + C++ MATS P++H++LGRK R +DHA WE RRED V ++
Sbjct:  428 WKPPSFLSIWTPCEFSVHGIRYVCGEQFMMAEKARIFGDDAACAKIMATSDPREHKSLGRKVRRYDHALWELRREDIVFSL 508
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.770e-20
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:   82 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 161
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5KWH8_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.050e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + M  + P+ ++ LGRK R FD+AEWERRRE+ VLT
Sbjct:    7 WKPPSGFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMASYDKIMTATDPKTYKYLGRKVRPFDYAEWERRREEIVLT 86
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.330e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:   82 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 161
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.370e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:  432 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 511
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5K4L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:  175 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 254
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.430e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:  599 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 678
[Close]
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Match: A0A6H5K6L2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.450e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATSRPQDHQALGRKYRNFDHAEWERRREDFVLT 240
            WKPP  FS  TPS+F V GV Y+CGEQ+MMSE A+L  D +   + MA + P+ H+ LGR  R FD+AEWERRRE+ VLT
Sbjct:   82 WKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLT 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K165_9PHAE4.830e-2160.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMH8_9PHAE6.570e-2160.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFN1_9PHAE3.960e-2053.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3B4_9PHAE7.770e-2057.50NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KWH8_9PHAE1.050e-1956.25NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JDD1_9PHAE1.330e-1957.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE1.370e-1957.50NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5K4L7_9PHAE1.400e-1957.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W4_9PHAE1.430e-1957.50Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K6L2_9PHAE1.450e-1957.50Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:685838..686266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.1
Seed ortholog evalue9.2e-13
Seed eggNOG ortholog1144275.COCOR_02238
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs1RCXE@1224,42TU0@68525,COG3236@2,COG5113@1
COG Functional cat.O
Best tax leveldelta/epsilon subdivisions
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size431
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.773547-CDS-C-linearis_contig87:685837..6862661622930673.773547-CDS-C-linearis_contig87:685837..686266Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 685838..686266 +
1690881189.8170989-CDS-C-linearis_contig87:685837..6862661690881189.8170989-CDS-C-linearis_contig87:685837..686266Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 685838..686266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16314.1prot_C-linearis_contig87.16314.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 685838..686266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16314.1

>prot_C-linearis_contig87.16314.1 ID=prot_C-linearis_contig87.16314.1|Name=mRNA_C-linearis_contig87.16314.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
WKPPFCFSNGTPSSFTVPGVLYTCGEQYMMSENARLSNDSSICSQTMATS
RPQDHQALGRKYRNFDHAEWERRREDFVLTVPIHTPNSRKIPFCVNTYRL
PGIAPSRRLVPSPTCGVLVLLHVTPTLLSLPVGLVATCLERL*
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mRNA from alignment at C-linearis_contig87:685838..686266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16314.1 ID=mRNA_C-linearis_contig87.16314.1|Name=mRNA_C-linearis_contig87.16314.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at C-linearis_contig87:685838..686266+ (Chordaria linearis ClinC8C monoicous)
TGGAAGCCGCCCTTCTGCTTCTCGAACGGGACACCGTCTTCGTTCACCGT
CCCCGGCGTCCTCTACACGTGTGGTGAGCAATATATGATGAGTGAGAATG
CCCGTCTTTCTAATGATTCGTCCATTTGCTCTCAAACCATGGCCACCTCG
CGTCCCCAAGATCACCAAGCTCTTGGACGTAAATATCGCAACTTTGACCA
TGCAGAATGGGAACGGCGTCGGGAGGATTTCGTTCTTACTGTACCGATAC
ATACGCCAAATTCGCGCAAAATTCCCTTCTGCGTCAACACTTATCGTCTA
CCGGGGATCGCACCCTCGCGGAGGCTAGTCCCATCGCCCACTTGTGGGGT
ATTGGTCTTGCTGCATGTCACCCCGACGCTGCTTTCCCTGCCTGTTGGAC
TGGTCGCAACCTGCTTGGAAAGGCTGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig87:685838..686266+

>mRNA_C-linearis_contig87.16314.1 ID=mRNA_C-linearis_contig87.16314.1|Name=mRNA_C-linearis_contig87.16314.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at C-linearis_contig87:685838..686266+ (Chordaria linearis ClinC8C monoicous)
TGGAAGCCGCCCTTCTGCTTCTCGAACGGGACACCGTCTTCGTTCACCGT
CCCCGGCGTCCTCTACACGTGTGGTGAGCAATATATGATGAGTGAGAATG
CCCGTCTTTCTAATGATTCGTCCATTTGCTCTCAAACCATGGCCACCTCG
CGTCCCCAAGATCACCAAGCTCTTGGACGTAAATATCGCAACTTTGACCA
TGCAGAATGGGAACGGCGTCGGGAGGATTTCGTTCTTACTGTACCGATAC
ATACGCCAAATTCGCGCAAAATTCCCTTCTGCGTCAACACTTATCGTCTA
CCGGGGATCGCACCCTCGCGGAGGCTAGTCCCATCGCCCACTTGTGGGGT
ATTGGTCTTGCTGCATGTCACCCCGACGCTGCTTTCCCTGCCTGTTGGAC
TGGTCGCAACCTGCTTGGAAAGGCTGTGATGGAAGCCGCCCTTCTGCTTC
TCGAACGGGACACCGTCTTCGTTCACCGTCCCCGGCGTCCTCTACACGTG
TGGTGAGCAATATATGATGAGTGAGAATGCCCGTCTTTCTAATGATTCGT
CCATTTGCTCTCAAACCATGGCCACCTCGCGTCCCCAAGATCACCAAGCT
CTTGGACGTAAATATCGCAACTTTGACCATGCAGAATGGGAACGGCGTCG
GGAGGATTTCGTTCTTACTGTACCGATACATACGCCAAATTCGCGCAAAA
TTCCCTTCTGCGTCAACACTTATCGTCTACCGGGGATCGCACCCTCGCGG
AGGCTAGTCCCATCGCCCACTTGTGGGGTATTGGTCTTGCTGCATGTCAC
CCCGACGCTGCTTTCCCTGCCTGTTGGACTGGTCGCAACCTGCTTGGAAA
GGCTGTGA
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