mRNA_C-linearis_contig87.16312.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16312.1
Unique NamemRNA_C-linearis_contig87.16312.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:670703..671738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1036
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16312.1prot_C-linearis_contig87.16312.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 670747..671409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930666.3538501-UTR-C-linearis_contig87:670702..6707461622930666.3538501-UTR-C-linearis_contig87:670702..670746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 670703..670746 +
1690881185.928987-UTR-C-linearis_contig87:670702..6707461690881185.928987-UTR-C-linearis_contig87:670702..670746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 670703..670746 +
1622930666.3832502-UTR-C-linearis_contig87:671409..6717381622930666.3832502-UTR-C-linearis_contig87:671409..671738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 671410..671738 +
1690881185.9479756-UTR-C-linearis_contig87:671409..6717381690881185.9479756-UTR-C-linearis_contig87:671409..671738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 671410..671738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930666.3675387-CDS-C-linearis_contig87:670746..6714091622930666.3675387-CDS-C-linearis_contig87:670746..671409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 670747..671409 +
1690881185.9386675-CDS-C-linearis_contig87:670746..6714091690881185.9386675-CDS-C-linearis_contig87:670746..671409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 670747..671409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16312.1

>prot_C-linearis_contig87.16312.1 ID=prot_C-linearis_contig87.16312.1|Name=mRNA_C-linearis_contig87.16312.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=221bp
MSQAPHAEVPVEHHHKRVDRAALHAGEDRVGVAPDAAPAGRRARLVVRGP
LRRLGRGGVGVGVRARAPPAAARTAGPAAPARPAQGRLRARGGAAASAVA
LLLWCPAHSAAIPVRFAARALPVPTTLSIRRRRRLSFSGVAAVRGSRHVA
AAFPLRRTRRRRRLRHCVGAPRADLPCAPRPPDSTRGREEAAGVREGEQL
SPRRPAGRRKVAAAAAGAGP*
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mRNA from alignment at C-linearis_contig87:670703..671738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16312.1 ID=mRNA_C-linearis_contig87.16312.1|Name=mRNA_C-linearis_contig87.16312.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1036bp|location=Sequence derived from alignment at C-linearis_contig87:670703..671738+ (Chordaria linearis ClinC8C monoicous)
CCCCCACCCGAGCTTTTCCCTTTCTGGGGGAACCCGGCGGCGTGATGTCT
CAAGCCCCCCATGCCGAAGTGCCCGTTGAGCATCATCACAAACGGGTCGA
TCGAGCAGCTCTCCATGCTGGAGAGGACCGAGTTGGAGTCGCCCCCGACG
CTGCCCCCGCTGGTCGACGTGCCCGGCTTGTGGTGCGAGGACCGTTGCGA
CGTCTTGGCCGTGGAGGGGTGGGAGTGGGAGTGAGAGCGCGAGCTCCGCC
CGCGGCTGCTCGCACGGCTGGCCCGGCTGCTCCCGCTCGCCCCGCTCAGG
GGCGGCTTCGCGCTCGCGGTGGTGCTGCCGCTTCCGCCGTCGCGTTGCTC
CTCTGGTGCCCTGCCCACTCCGCCGCCATCCCGGTCCGATTTGCGGCGCG
CGCTCTTCCTGTCCCCACCACGCTCTCTATCCGCCGCCGCCGCCGCCTGA
GTTTTTCGGGCGTCGCCGCCGTACGCGGGAGCCGGCACGTCGCCGCCGCC
TTTCCGCTCCGCCGCACCCGCCGCCGCCGCCGCCTTCGCCATTGTGTCGG
CGCCCCTCGTGCTGACCTCCCCTGTGCTCCTCGCCCGCCGGACTCTACGC
GGGGGCGTGAAGAAGCCGCTGGGGTCCGGGAGGGGGAGCAGCTTTCGCCC
CGCCGCCCCGCCGGTCGTCGCAAAGTTGCCGCCGCCGCCGCCGGGGCGGG
GCCTTGAGCAGATCACGGACGCCGCGGGCGGCGCCTTCGGCTTCGCCTGG
TCCAGCGGGTGGCGCTGCTTGCCCTTGCTGCCGCTGCCGCCGCCGCTGCT
GCCGAGGTCCTGGAGGGTCGCAGCCGAGGTGGCCGCCGCGAACACCGCCG
CCTCCTCCGGGGACAGCGGCGGCGGGATCTCCGGCTGACCCCCGTCGTAG
TCCACGTCCGGGCTGACGGTGTGGGTGGACTTGGTGGAGCCTCCCATCAG
GCTCGCGGGGATGTGGATGCCGCCCACGTTGCCGCTGCCGGACATGCCCG
TGGACAGGGCCCGCCGCCGCCGCCCGCTGCTCCTGC
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Coding sequence (CDS) from alignment at C-linearis_contig87:670703..671738+

>mRNA_C-linearis_contig87.16312.1 ID=mRNA_C-linearis_contig87.16312.1|Name=mRNA_C-linearis_contig87.16312.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at C-linearis_contig87:670703..671738+ (Chordaria linearis ClinC8C monoicous)
ATGTCTCAAGCCCCCCATGCCGAAGTGCCCGTTGAGCATCATCACAAACG
GGTCGATCGAGCAGCTCTCCATGCTGGAGAGGACCGAGTTGGAGTCGCCC
CCGACGCTGCCCCCGCTGGTCGACGTGCCCGGCTTGTGGTGCGAGGACCG
TTGCGACGTCTTGGCCGTGGAGGGGTGGGAGTGGGAGTGAGAGCGCGAGC
TCCGCCCGCGGCTGCTCGCACGGCTGGCCCGGCTGCTCCCGCTCGCCCCG
CTCAGGGGCGGCTTCGCGCTCGCGGTGGTGCTGCCGCTTCCGCCGTCGCG
TTGCTCCTCTGGTGCCCTGCCCACTCCGCCGCCATCCCGGTCCGATTTGC
GGCGCGCGCTCTTCCTGTCCCCACCACGCTCTCTATCCGCCGCCGCCGCC
GCCTGAGTTTTTCGGGCGTCGCCGCCGTACGCGGGAGCCGGCACGTCGCC
GCCGCCTTTCCGCTCCGCCGCACCCGCCGCCGCCGCCGCCTTCGCCATTG
TGTCGGCGCCCCTCGTGCTGACCTCCCCTGTGCTCCTCGCCCGCCGGACT
CTACGCGGGGGCGTGAAGAAGCCGCTGGGGTCCGGGAGGGGGAGCAGCTT
TCGCCCCGCCGCCCCGCCGGTCGTCGCAAAGTTGCCGCCGCCGCCGCCGG
GGCGGGGCCTTGAATGTCTCAAGCCCCCCATGCCGAAGTGCCCGTTGAGC
ATCATCACAAACGGGTCGATCGAGCAGCTCTCCATGCTGGAGAGGACCGA
GTTGGAGTCGCCCCCGACGCTGCCCCCGCTGGTCGACGTGCCCGGCTTGT
GGTGCGAGGACCGTTGCGACGTCTTGGCCGTGGAGGGGTGGGAGTGGGAG
TGAGAGCGCGAGCTCCGCCCGCGGCTGCTCGCACGGCTGGCCCGGCTGCT
CCCGCTCGCCCCGCTCAGGGGCGGCTTCGCGCTCGCGGTGGTGCTGCCGC
TTCCGCCGTCGCGTTGCTCCTCTGGTGCCCTGCCCACTCCGCCGCCATCC
CGGTCCGATTTGCGGCGCGCGCTCTTCCTGTCCCCACCACGCTCTCTATC
CGCCGCCGCCGCCGCCTGAGTTTTTCGGGCGTCGCCGCCGTACGCGGGAG
CCGGCACGTCGCCGCCGCCTTTCCGCTCCGCCGCACCCGCCGCCGCCGCC
GCCTTCGCCATTGTGTCGGCGCCCCTCGTGCTGACCTCCCCTGTGCTCCT
CGCCCGCCGGACTCTACGCGGGGGCGTGAAGAAGCCGCTGGGGTCCGGGA
GGGGGAGCAGCTTTCGCCCCGCCGCCCCGCCGGTCGTCGCAAAGTTGCCG
CCGCCGCCGCCGGGGCGGGGCCTTGA
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