mRNA_C-linearis_contig87.16311.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16311.1
Unique NamemRNA_C-linearis_contig87.16311.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5JIF1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIF1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.380e-16
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWGPHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGVPPPPRLYS-GADRAMNCPVLAAIGTSQPSRRTRAGLVNPPA 489
            AG   Y +   W PH  G++L T L+D + K RK   A N+GY   +E  LS+ A  KA+ I+ G+R AAR+ G+P        GADR M+CPV+AAI  S    RTR+     PA
Sbjct:   21 AGQTRYEVIHKWSPHERGIKLRTTLLDSKRKGRK--AAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEGLRTRSSATTNPA 134
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BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5JIB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.850e-15
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWGPHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGVPPPPRLYS-GADRAMNCPVLAAIGTSQPSRRTRAGLVNPPA 489
            AG   Y +   W PH  G++L T L+D + K RK   A N+GY   +E  LS+ A  KA+ I+ G+R AAR+ G+P        GADR M+CPV+AAI  S    RTR+     PA
Sbjct:   21 AGQTRYEVIHKWSPHERGIKLRTTLLDSKRKGRK--AAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEGLRTRSSATTNPA 134
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BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.040e-15
Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWGPHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGVPPPPRLYS-GADRAMNCPVLAAIGTSQPSRRTRAGLVNPPA----EPADDQRQPPQPESLIA 540
            AG   Y +   W PH  G++L T L+D + K RK   A N+GY   +E  LS+ A  KA+ I+ G+R AAR+ G+P        GADR M+CPV+AAI  S    RTR+     PA    EP  D R     ES +A
Sbjct:   21 AGQTRYEVIHKWSPHERGIKLRTTLLDSKRKGRK--AAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEGLRTRSSATTNPAANNPEPQPDWRD--SSESFLA 153
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BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5JR76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR76_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-10
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWG-PHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGVPPPPRLYSGADRAMNCPVLAA 432
            AG +++ + Q+W      G+ + T L DP  K  KR  ARNSG     E  LS  A  KA+EI+ G+REAARR GVP       GAD  M+CPV+ A
Sbjct:   90 AGGRQFKVVQSWRLKEGRGVEITTKLFDP--KAVKRAAARNSGTSEACEADLSKVAREKADEIMKGKREAARRAGVPQARGQGGGADSHMSCPVIRA 184
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BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5KYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.270e-8
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWG-PHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGVPPPPRLYSGADRAMNCPVL 426
            AG +++ + Q+W      G+ + T L D   K  KR  ARNSG     E  LS  A  KA++I+ G+RE ARR GVP       GAD  M+CPV+
Sbjct:   21 AGERQFKVVQSWRLKEGRGVEITTKLFDL--KAGKRAAARNSGTSEACEADLSKVAREKADKIMKGKREGARRAGVPQARGRGGGADSHMSCPVI 113
[Close]
BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5JKR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.600e-6
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWG-PHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLG 366
            AG +++ + Q+W      G+ + T L DP  K  KR  ARNSG     E+ LS  A  KA+EI+ G+REAARR G
Sbjct:   21 AGERQFKLVQSWRLKEGRGVEITTKLFDP--KAGKRAAARNSGTSEACEEDLSKVAREKADEIMKGKREAARRAG 93
[Close]
BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Match: A0A6H5LDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDP5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.910e-5
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  145 AGNKEYVIKQTWG-PHALGLRLCTALMDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLG 366
            AG +++ + Q+W      G+ + T L DP  K  KR  ARNSG     +  LS  A  KA+EI+ G+REAARR G
Sbjct:   21 AGERQFKVVQSWRLKEGRGVEITTKLFDP--KAGKRAAARNSGTSEACKADLSKVAREKADEIMKGKREAARRAG 93
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JIF1_9PHAE2.380e-1642.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIB0_9PHAE6.850e-1542.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDQ3_9PHAE8.040e-1540.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JR76_9PHAE1.420e-1044.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYP1_9PHAE6.270e-841.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKR3_9PHAE7.600e-644.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDP5_9PHAE4.910e-542.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:651541..652353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16311.1prot_C-linearis_contig87.16311.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 651541..652134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930665.8393924-CDS-C-linearis_contig87:651540..6515851622930665.8393924-CDS-C-linearis_contig87:651540..651585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 651541..651585 -
1690881185.7574136-CDS-C-linearis_contig87:651540..6515851690881185.7574136-CDS-C-linearis_contig87:651540..651585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 651541..651585 -
1622930665.859893-CDS-C-linearis_contig87:651840..6521341622930665.859893-CDS-C-linearis_contig87:651840..652134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 651841..652134 -
1690881185.7674491-CDS-C-linearis_contig87:651840..6521341690881185.7674491-CDS-C-linearis_contig87:651840..652134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 651841..652134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930665.8789895-UTR-C-linearis_contig87:652134..6523531622930665.8789895-UTR-C-linearis_contig87:652134..652353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 652135..652353 -
1690881185.7762976-UTR-C-linearis_contig87:652134..6523531690881185.7762976-UTR-C-linearis_contig87:652134..652353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 652135..652353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16311.1

>prot_C-linearis_contig87.16311.1 ID=prot_C-linearis_contig87.16311.1|Name=mRNA_C-linearis_contig87.16311.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MDPRDKNRKRVLARNSGYPAPNEQALSSAAFTKANEILDGRREAARRLGV
PPPPRLYSGADRAMNCPVLAAIGTSQPSRRTRAGLVNPPAEPADDQRQPP
QPESLIAPAPLTA
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mRNA from alignment at C-linearis_contig87:651541..652353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16311.1 ID=mRNA_C-linearis_contig87.16311.1|Name=mRNA_C-linearis_contig87.16311.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at C-linearis_contig87:651541..652353- (Chordaria linearis ClinC8C monoicous)
CCGATTTAGGGGGGGTAGAGCCACTCAGAAAGTTGCTCAGACAAAAACTC
GCAGTGGTGGAGACGTTTGGGTTATGAGCTCTCAGGCTGGGCATGAAGGC
CCAGCGGTCGCAGTCGCCGGGAAATGTGAACGCACGATGAAGGCGCGGGA
AACAAAGAGTATGTCATCAAGCAGACGTGGGGGCCACACGCGCTAGGGTT
GCGGCTATGCACGGCCCTCATGGACCCGCGGGACAAGAATAGAAAGAGAG
TGTTGGCCCGCAATAGTGGCTATCCTGCCCCCAACGAACAAGCTTTGAGC
TCGGCGGCCTTTACCAAAGCGAACGAGATTCTGGATGGCAGGCGAGAGGC
AGCGCGAAGGCTGGGCGTACCACCACCACCGCGGTTGTACAGCGGAGCAG
ACAGGGCTATGAACTGCCCCGTCTTGGCGGCCATTGGGACCTCTCAGCCT
AGCAGGAGGACTCGTGCTGGTCTGGTAAACCCGCCCGCTGAACCGGCAGA
TGACCAACGACAGGTGAGAAACATAGTCGGCGTGCATCGTTGCTGCTGCT
TGTACAGCAGTACATCATAAGTGTTGACAGCTCCGACACATTATTATTAC
ATGCTGTATGCACACCTTCACACACACTTCCACAGGTATTGTGTCGTTAT
CGCGCACTGTTCCTTCCTGCTGCACAGTAGTGCTAATTTCGCGAAGTTCA
CACCCTATATGTATTAATCGGTCCGTGACGCTGTAAACCTTTGCTTCTGC
TGCTGTGTGTGACTGCAGCCACCGCAGCCGGAGAGTTTGATTGCGCCAGC
ACCCTTGACAGCG
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Coding sequence (CDS) from alignment at C-linearis_contig87:651541..652353-

>mRNA_C-linearis_contig87.16311.1 ID=mRNA_C-linearis_contig87.16311.1|Name=mRNA_C-linearis_contig87.16311.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig87:651541..652353- (Chordaria linearis ClinC8C monoicous)
ATGGACCCGCGGGACAAGAATAGAAAGAGAGTGTTGGCCCGCAATAGTGG
CTATCCTGCCCCCAACGAACAAGCTTTGAGCTCGGCGGCCTTTACCAAAG
CGAACGAGATTCTGGATGGCAGGCGAGAGGCAGCGCGAAGGCTGGGCGTA
CCACCACCACCGCGGTTGTACAGCGGAGCAGACAGGGCTATGAACTGCCC
CGTCTTGGCGGCCATTGGGACCTCTCAGCCTAGCAGGAGGACTCGTGCTG
GTCTGGTAAACCCGCCCGCTGAACCGGCAGATGACCAACGACAGATGGAC
CCGCGGGACAAGAATAGAAAGAGAGTGTTGGCCCGCAATAGTGGCTATCC
TGCCCCCAACGAACAAGCTTTGAGCTCGGCGGCCTTTACCAAAGCGAACG
AGATTCTGGATGGCAGGCGAGAGGCAGCGCGAAGGCTGGGCGTACCACCA
CCACCGCGGTTGTACAGCGGAGCAGACAGGGCTATGAACTGCCCCGTCTT
GGCGGCCATTGGGACCTCTCAGCCTAGCAGGAGGACTCGTGCTGGTCTGG
TAAACCCGCCCGCTGAACCGGCAGATGACCAACGACAGCCACCGCAGCCG
GAGAGTTTGATTGCGCCAGCACCCTTGACAGCGCCACCGCAGCCGGAGAG
TTTGATTGCGCCAGCACCCTTGACAGCG
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