mRNA_C-linearis_contig87.16295.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig87.16295.1 vs. uniprot
Match: D8LL38_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL38_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 1.650e-132 Identity = 562/1268 (44.32%), Postives = 633/1268 (49.92%), Query Frame = 1
Query: 388 APALE-ASPRLWALLREAQEEMERGTDVLGDELDILWQNVREGATDCGRETE-------------YMVAAGXXXXXXXXXXXXXXXXXXXGQRLPRREADVLLDGLEALQAEMEAEARNFQRQKAELMRKIK-ALPIGGGRDG--NGEAGLGDVEGRPRRGKQNSPAGMVMELEEEAESMRTAVIASHARLLGRLQGVPRGRAGGEERRATRTRTTXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXREGSGHSATVAMHGGHGDGNSSGIGLDNLVDSAQAVLGAREELDELKGAVEAARDEAAIEREKAHNAQEQASRLESLRLSAASAARRAHRSAKKAKAEADNQGRALETERERGAASXXXXXXXXXXXXXESEE-----------LQHRLAYLRAETEGLERRLREASKELEEREARAEXXXXXXXXXXERLADCRDSFGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQAXGEKRVRGMREATVELEGLRSEIADVXXXXXXXXXXXXXXXXXTEDKLACVEEAETAAVSLGRRAAELQVQAEDLEAARDRARAEVESARRRQAEELSRWKEAMEERRQEFERFSGLVRDKAAALSDLEKQAKAESARSRQAQCEQEAASARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVQAVAA-------RARQQLADLTEKRRDEESAVAAXXXXTAALAREEAELGATAAAARRCGAGGREAAXXXXXXLAELXXXXXXXXXXXXXXXXESAELEAGVARKREQDRFAREAAEVQQARLDELKREVAALRDERLRAEKGVWALKTEVGLLSTRRDDAARRDRQRERDEGALSARREAIAAAAAREQERLGLETAAKEKLEVEVAELDARADTLRDEVARATQDGAALREDASAAASRASEARAILAEDEKETARLASRVEMLRATKAALDSELSGLRHEIDSLRRGNSSG---------LASRGAGWTNGEGSGLLPGGTLLVEGXXXXXXYSVEKGGGLPSAGRATRRGKMRAGRGEEDGSDVGXXXXXXXX--------------NLVEIVAEFQGRLRRQVQAALADGGV-------------------SSFHNGAENPSAQRPSSLSRVSV--------GPVRVR---QAREDQSGV-FPQGRRQRDVAFSGRAGGSCD--DVIGELEQRIGSV 3918
A A+E SPRLW LLREAQEEMERGTDVLGDEL+ILW+NVREGA D GR XXXXXXXXXXXXXXXXXXX +LPRR+AD LL GLE LQAEME +A +FQRQ+ LMRKI+ +L +G R N E + +G R ++ ++ LEEEAESMR AVIASHARLLGR++ A +A+ T G G HS GG G GN S LD+LVDSAQAVL AREEL EL+ AVE RDE + EREK+ A+ QASRLES R SAA AA RA+R A KA+AEA+ R+R A + EE L RL LR E E LE EAS+ LE REAR XXXXXXXXXXERLADCRDSFGLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X A+V E LE ARDR E E+ARRRQAEELSRWKEAM ER+QEFERFS +VR KA++L DLEK+A+ +ARSRQAQ +QEA X XXXXX +AVQA AA RARQQLAD TE+RR+EE AV A X AALARE+AEL +TA A + A RE XXX LAEL ES+ELEAGVAR+REQ+RFAR AAE QQARLD+LKREVAALRDE LRAEK VW+LK+EV LS RRD+A+RRDR RL + T A+E+LE E+ ELDARA LR EVARATQDGAALREDASAAA LAS+ E LRATK ALDSEL+GLRHE+D LRR GW LL L VE XXXXXX XXXXXXXX NLVEIVAEFQGRLRRQVQAALADG G+ + + + SS S+V+ P R R QA D G RR D FSGRA G DV+GELE+RIGSV
Sbjct: 8 AAAMERGSPRLWTLLREAQEEMERGTDVLGDELNILWRNVREGAAD-GRGDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPRRQADALLQGLEKLQAEMEVQAASFQRQRNGLMRKIQQSLAVGERRQHKHNSEGAAREGKGGTRERRRKKCDKILERLEEEAESMRAAVIASHARLLGRVRETASNAA-----KASAT-----------------AGGAVAGIGRERSATMGVVVRGGDHS------GGCGGGNRSRGSLDDLVDSAQAVLAAREELAELRVAVEETRDELSAEREKSRAARRQASRLESFRSSAAVAATRANRDADKARAEAERLALEAAAARDRAATAAEQEARQLSSRRCAEEEAEGAAAAAESELLGRLGSLRGEAEELEXXXXEASRXLERREARXXXXXXXXXXXXERLADCRDSFGLEIEGLQKGVGELEAEAVGWRGALEAARSRLEAEEERGRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEV----------------------------------------------EGLEFARDRVAEETEAARRRQAEELSRWKEAMAERQQEFERFSRMVRSKASSLGDLEKEAEGRAARSRQAQRDQEAXXXXXXAALDAARNAASLAERGRDKAEXXXXXAEAAESRTVHAEEELRRVTAEIGSERACLDKARTDLQAVQATAAELEAENSRARQQLADATERRREEEGAVEAAXQRAAALAREKAELSSTAVAVQLQSASEREXXXXXRNELAELREAADRERRTLEGFRDESSELEAGVARRREQERFARGAAEAQQARLDDLKREVAALRDEHLRAEKSVWSLKSEVSSLSARRDNASRRDRXXXXXXXXXXXXXXXXXXXXXXXXXRLRVATVARERLEAEMDELDARACDLRAEVARATQDGAALREDASAAAXXXXXXXXXXXXXXXXXXXLASQAETLRATKRALDSELAGLRHELDFLRRRRDGDGXXXXXXXXXXXXXLGWKEKRVEHLL----LPVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDGGNLVEIVAEFQGRLRRQVQAALADGDXXXXXXXXXXTCSADVGDDDGRIRRGSTSAAVAQSSSFSQVTTVGLVDDGDAPPRARLRRQAPADSRGASLITHRRLNDGPFSGRAAGGRGGGDVLGELEKRIGSV 1196 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig87.16295.1 >prot_C-linearis_contig87.16295.1 ID=prot_C-linearis_contig87.16295.1|Name=mRNA_C-linearis_contig87.16295.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1271bp MRVTPDAVVRPVRRQKKAAARLPLPPPPPRRRSRGHHQHHHRPPVFGEENback to top mRNA from alignment at C-linearis_contig87:507078..514800+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig87.16295.1 ID=mRNA_C-linearis_contig87.16295.1|Name=mRNA_C-linearis_contig87.16295.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7723bp|location=Sequence derived from alignment at C-linearis_contig87:507078..514800+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig87:507078..514800+ >mRNA_C-linearis_contig87.16295.1 ID=mRNA_C-linearis_contig87.16295.1|Name=mRNA_C-linearis_contig87.16295.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7626bp|location=Sequence derived from alignment at C-linearis_contig87:507078..514800+ (Chordaria linearis ClinC8C monoicous)back to top |