mRNA_C-linearis_contig87.16289.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16289.1
Unique NamemRNA_C-linearis_contig87.16289.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:288797..292206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size941
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16289.1prot_C-linearis_contig87.16289.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 288797..289315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930666.1301637-CDS-C-linearis_contig87:288796..2893151622930666.1301637-CDS-C-linearis_contig87:288796..289315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 288797..289315 -
1690881185.8583453-CDS-C-linearis_contig87:288796..2893151690881185.8583453-CDS-C-linearis_contig87:288796..289315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 288797..289315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930666.1512883-UTR-C-linearis_contig87:289315..2894431622930666.1512883-UTR-C-linearis_contig87:289315..289443Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 289316..289443 -
1690881185.8709085-UTR-C-linearis_contig87:289315..2894431690881185.8709085-UTR-C-linearis_contig87:289315..289443Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 289316..289443 -
1622930666.175125-UTR-C-linearis_contig87:291914..2922061622930666.175125-UTR-C-linearis_contig87:291914..292206Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 291915..292206 -
1690881185.8806226-UTR-C-linearis_contig87:291914..2922061690881185.8806226-UTR-C-linearis_contig87:291914..292206Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 291915..292206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16289.1

>prot_C-linearis_contig87.16289.1 ID=prot_C-linearis_contig87.16289.1|Name=mRNA_C-linearis_contig87.16289.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
MDDHSDHEAEQSHDEDEEEHQQLAPAAGGAPGGGAHVDDDVEDDEDDDEV
AIIEDGGGGGGGGGGGGYSSAAGDEGEGEGDVSDQDQDLGVANHDDDDDD
DDDDDDDDDDAAIGGGHDGNGNAIGHGNAHADGAEMNSNSNSNSNSNDDS
PPPPPISAVYVVDQGGNGQELVV
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mRNA from alignment at C-linearis_contig87:288797..292206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16289.1 ID=mRNA_C-linearis_contig87.16289.1|Name=mRNA_C-linearis_contig87.16289.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3410bp|location=Sequence derived from alignment at C-linearis_contig87:288797..292206- (Chordaria linearis ClinC8C monoicous)
CCGGGTCCTACGCCTACACACGGGAGAGACAAGCGAGGAGACTTGGAAGA
CGGGTGCGCGGGTGGTGTCCTGGAGCATAGCAGGGTCTCATCTGCAATTT
TGACTCGTCGATTTTCACCGCTTCCGAGCCCCCCCTCCGGATCTCTCCTC
CTCTGTGAGAGAGAGAGGAGCGGGAGGAGAGTGCCCGCCTTCGACGCCGA
ACCATCAGAGAGAGGGGGCCAGATCCTGAAGGGGCTAAGCGCACGGTGGA
GCTACTTCTACTGCGAGGCTAACGCTCGCTTCTGCTATCGAGGTCTGCCC
CCGAATTTTTTGTCAAGGATACAAGTTGTTGTTTGGGTCCTAAGACACAT
AATACAGGGCCTGCTTGTGTTTTTTTTTGTTTGTTTTTGGCGCGAGCAAC
AGCAGATGTTCTCGCTATGTGCTCCTCTGTAGATAGGGCGAGGTTGCTCG
ATAGTGCCGTATTGGAGTGGCCAAGATGACTGCTGTTACTGTGGGTTGGG
GCACGTTGCTCTGCTGTTGTCGGTGCTTCTCTTTCCTGCTTGCTCTGTAT
TGCGCTGTTCTCCCCACTCGAGCAAGCAACAAACAGCGATTAGCGATAAA
GGTGTACTGCTGACCTTATGCACACGGCAAAGTATTTAATATTAATAATA
GCATCAGCAGCAGATCACACATGCACACTGAAAAGTCTCACGACCCCAGT
ACAACAGTGAGAGGCGTCAGGCACCTAAAGGTGTGGACAGTGGACAGACG
GCAGAATAGATGGCACGAAAACTCAACTACATAGATCTGTACTGTATACA
GTAGAGGTTTGCTCTGAGACAGAGAGAGAGACAGCATAACACATGGTACA
GCAGTACAGAACGCCGATGCTGAATTGTTGTCGTTGTTGTTGTTGGTGTT
GTTGTTGTCTTCACATTAAAAACTAAAAACCATCCCGTCTCTCTTCACCG
GTGCGCCCCTTAGTCCGTACTGATCCAACAGACACGGCCAATTCCCGTGG
CCACAGGTTAACTTACCCCAAAAAAGGTATACTAATAAAAATAAAATGGA
CCCGAAGGGTCAGCAGAGCGATAAAATCAAGACGAAATCAAAACATTTAG
TCTGGAGCCCTCCGCTCCCCTCTGCACGCTACAGAGTAGTATGCGAGCTA
AAAATAAAGTAAAATAAAACTGGAGATATCAAAATCACCAACCCCGGGGA
TACACATCCCCAGATCCTATCTTGAGTACCCCTACACTGCCAGCAGGGTA
TTCCGTGCCGGGTTCTCGCCAGCCAGGCAGACAAATCGAGTCCTCCACCC
CGATTATAAAACGCTGACACGCAGACATGGCACGGGGAAAGGAAAGGAAA
ATATTCCCCGTGCTACCGATGTATCCCCGTCCTTCGAAGTGCAGCACAGA
TCCAAGACAACAGGTAGGGAGCGGAAACAGGAAGGGAAAAAAGGAAGAAA
AATGAAAAATAAAAAAAATAAAAAGACAAGCAAGAAACAAGCCAGAGTAC
AAACAAAAACAAAAACACAAACAGACAACGACATAACACCACCAAGAAAG
AAACTACACGTCATACCTCCTTGGGGGGTGGGGGAAGGAGGGAAACATTA
ATCAGGGAGGCATCAACCCGTTTCGTGTCGTGCAACACGATCTATCAACT
CTCGTTTGCTTTCTTCCTTCGCCGTTTCGTCCTTCCGTTGCCCCTTTCCC
GCCCCATTTGTTTTTGCCGCCTCTATACTATTCTTGGTCTTGCTGTCTCG
TTTGGTTGCTCGTTGCCGGCTAGCCTCCTCCTCGCCCTTATGCCAAGCGG
TCATGAACCTCTCACCTCCCTTCACCACCCCCGCATGCCACGGCGCTCCT
CCCCGCACCTTCGCCGCTTCCGTCCAACGTGCTTTCGGTACTCCGAAAAA
CCGCGGCTCGTCGGCCGTAGAGCCGTGCGTCGCCCCATTTAGTCTACTTT
CTGCCTACCTCAACCATTCATGCTGTACTCAGCTCGCCGTCGATGTAATT
TCGTAGGTACGACGAGTGTTTAGTCGCACGAAGGAAACGGGGGCGGGGAG
GGGTACCCCCCGGGCGGGAGAGGGGCGGGGGGAAGGTCTTGTTTATAAGT
AAACACACGAACCTCGTACTACTTTTATCATTTCCCATTTATCCAAACTG
GGCGGCCGCCCCATTTTTCATTCTGTTCATTTGCGGGGCCGAATTTTTTA
GGGTGATTTAGGTGGGGACGTGTGTGTTACAGTAGTGTGAAGCGAAGGGC
CAGGGTAGGGTAGGGCATCCTGCCTGTCGTGTAGTCGGGATGCACGTCTA
CCTACATACAGTCTCTTTTGTTCTCAAAAGTGCATCGCCCCCCTCCCCCC
CCTACCCCGCCCGCCGGCCCGTATTCTGCGTGGTTTTATTAGACAAAACC
CCAACAACGCACACGATGAGCTCTCATACGATGAGCTCTTCTCTCCGACA
GCAGTCTCAATACCCGATTGTTTTTCTTTTCTCGTCTCTGCTGCCGTGTG
AGACTATGTGCGTATGCTGTACTACTCCCCCCGACACATAGTTTTATTTT
AAGTAGAAGTTTGAATGTTGGGGATGTACAGCAGAAGTAGAGCGGCATCG
TTCATCGAGCACGTGGGCTTAGCTCCAAAACACACGCAGCGCAAAACGGG
AAACAAAAAGGCGAAGAAGGACACGCACCAACATACATATATGATTCATA
CAACATGCAAAACATGAAACTAACTCCCTTCAAACCACCAATCACCACCA
TCAACGCATTCAGGAGCACCACCACCACCACCACTAGCCCCAGGCAGGCG
AAACCAAGATAGGCAAACCTAACCTACTTGTACAGCAGTAGCAGGGACGT
GTTTTAAGCAGAGGAACGGGGCGCCGCCCGAGTCGCCTAAGATGGACGAC
CACTCGGACCACGAAGCGGAACAGAGCCACGACGAGGATGAGGAGGAACA
TCAACAGCTCGCCCCTGCTGCTGGCGGCGCCCCGGGAGGCGGCGCACACG
TAGACGACGACGTCGAGGACGATGAGGATGACGACGAGGTCGCGATCATC
GAGGACGGGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTTACAGCTC
CGCCGCGGGAGACGAAGGTGAAGGTGAAGGTGACGTCAGCGACCAAGACC
AAGATCTCGGCGTGGCCAATCACGACGACGACGACGACGACGACGACGAC
GACGACGACGACGACGACGACGCCGCTATCGGCGGTGGGCATGACGGCAA
CGGCAATGCCATCGGCCACGGCAACGCCCACGCCGATGGCGCAGAGATGA
ACAGCAACAGCAACAGCAACAGCAACAGCAACGACGACTCCCCGCCGCCC
CCGCCGATCTCCGCGGTGTACGTGGTGGACCAGGGGGGGAACGGCCAGGA
GCTTGTGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig87:288797..292206-

>mRNA_C-linearis_contig87.16289.1 ID=mRNA_C-linearis_contig87.16289.1|Name=mRNA_C-linearis_contig87.16289.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig87:288797..292206- (Chordaria linearis ClinC8C monoicous)
ATGGACGACCACTCGGACCACGAAGCGGAACAGAGCCACGACGAGGATGA
GGAGGAACATCAACAGCTCGCCCCTGCTGCTGGCGGCGCCCCGGGAGGCG
GCGCACACGTAGACGACGACGTCGAGGACGATGAGGATGACGACGAGGTC
GCGATCATCGAGGACGGGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
TTACAGCTCCGCCGCGGGAGACGAAGGTGAAGGTGAAGGTGACGTCAGCG
ACCAAGACCAAGATCTCGGCGTGGCCAATCACGACGACGACGACGACGAC
GACGACGACGACGACGACGACGACGACGACGCCGCTATCGGCGGTGGGCA
TGACGGCAACGGCAATGCCATCGGCCACGGCAACGCCCACGCCGATGGCG
CAGAGATGAACAGCAACAGCAACAGCAACAGCAACAGCAACGACGACTCC
CCGCCGCCCCCGCCGATCTCCGCGGTGTACGTGGTGGACCAGGGGGGGAA
CGGCCAGGAGCTTGTGGTGATGGACGACCACTCGGACCACGAAGCGGAAC
AGAGCCACGACGAGGATGAGGAGGAACATCAACAGCTCGCCCCTGCTGCT
GGCGGCGCCCCGGGAGGCGGCGCACACGTAGACGACGACGTCGAGGACGA
TGAGGATGACGACGAGGTCGCGATCATCGAGGACGGGGGGGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGTTACAGCTCCGCCGCGGGAGACGAAGGTGAA
GGTGAAGGTGACGTCAGCGACCAAGACCAAGATCTCGGCGTGGCCAATCA
CGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACG
CCGCTATCGGCGGTGGGCATGACGGCAACGGCAATGCCATCGGCCACGGC
AACGCCCACGCCGATGGCGCAGAGATGAACAGCAACAGCAACAGCAACAG
CAACAGCAACGACGACTCCCCGCCGCCCCCGCCGATCTCCGCGGTGTACG
TGGTGGACCAGGGGGGGAACGGCCAGGAGCTTGTGGTG
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