mRNA_C-linearis_contig87.16282.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16282.1
Unique NamemRNA_C-linearis_contig87.16282.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16282.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.170e-24
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    4 DGMSMKQDFCDALIDACGDEISFGGPVEYGGLTYCEQHVGTSGTDSFWSYPYSDPLIVPGELTELFPDINGPVDFPDGTVSMRQSPDGSMYWIVGLEGQV 303
            DG++MK +FC+ L+D C   I F     Y G +YC+ H G  G D FWSYPY +P I    L E+FPD+ G  + PD TVS+RQ+PDGS +W++G+ G++
Sbjct:  104 DGLTMKSEFCEELVDECAAYIEF---PTYDGTSYCDHHTG-GGNDFFWSYPYEEPEIFEPGLNEVFPDL-GDGEQPDDTVSVRQTPDGSQWWLLGIAGEI 198
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BLAST of mRNA_C-linearis_contig87.16282.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.320e-24
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    4 DGMSMKQDFCDALIDACGDEISFGGPVEYGGLTYCEQHVGTSGTDSFWSYPYSDPLIVPGELTELFPDINGPVDFPDGTVSMRQSPDGSMYWIVGLEGQV 303
            DGM+MK DFC+ L+ ACG +I+F    +   + YC +H G  G D FWSYPY + +  P  L E+FPD+ G    PD TVSMRQ+PDGS +W++G+ GQ+
Sbjct:  107 DGMTMKSDFCNELLTACGGQINFP-TYDNNTVDYCTKHTG-GGDDFFWSYPYEEAISDPRFLNEVFPDL-GDNQQPDDTVSMRQTPDGSQWWLLGISGQI 203
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BLAST of mRNA_C-linearis_contig87.16282.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.860e-21
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    4 DGMSMKQDFCDALIDACGDEISFGGPVEYGGLTYCEQHVGTSGTDSFWSYPYSDPLIVPGELTELFPDINGPVDFPDGTVSMRQSPDGSMYWIVGLEGQV 303
            DGM+MK  FCD L+ AC  +I F    + G + YC +H G  G D FWSYPY + +      ++LFPD+ G  + PD TVSMRQ+PDGS +W++G+ GQ+
Sbjct:   30 DGMTMKSAFCDELVTACDGQIDFP-TYDSGTVDYCTKHTG-GGDDLFWSYPYEEAVTC-DLYSKLFPDL-GANEQPDDTVSMRQTPDGSQWWLLGISGQI 125
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BLAST of mRNA_C-linearis_contig87.16282.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.420e-17
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    4 DGMSMKQDFCDALIDACGDEISFGGPVEYGGLTYCEQHVGTSGTDSFWSYPYSDPLIVPGELTELFPDINGPVDFPDGTVSMRQSPDGSM 273
            DG++MK +FC++L+DAC   I F     Y G++YC+ H G  G D FWSYPY +P I    L ELFPD+ G  + P  TVSMRQ    +M
Sbjct:   59 DGLTMKNEFCESLVDACAAYIDF---PTYDGVSYCDHHTG-GGADFFWSYPYEEPEIFEPGLNELFPDL-GDGEQPSDTVSMRQVDSDNM 143
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4P3_ECTSI5.170e-2447.00Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G961_ECTSI5.320e-2449.00Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G962_ECTSI2.860e-2147.00GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZF5_9PHAE1.420e-1747.78GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:137089..139976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.9e-18
Seed eggNOG ortholog2880.D7G4P3
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size310
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16282.1prot_C-linearis_contig87.16282.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 137089..139967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.6765027-CDS-C-linearis_contig87:137088..1371421622930668.6765027-CDS-C-linearis_contig87:137088..137142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 137089..137142 -
1690881187.097419-CDS-C-linearis_contig87:137088..1371421690881187.097419-CDS-C-linearis_contig87:137088..137142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 137089..137142 -
1622930668.7048085-CDS-C-linearis_contig87:137689..1377781622930668.7048085-CDS-C-linearis_contig87:137689..137778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 137690..137778 -
1690881187.1085892-CDS-C-linearis_contig87:137689..1377781690881187.1085892-CDS-C-linearis_contig87:137689..137778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 137690..137778 -
1622930668.728617-CDS-C-linearis_contig87:139810..1399671622930668.728617-CDS-C-linearis_contig87:139810..139967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 139811..139967 -
1690881187.1178238-CDS-C-linearis_contig87:139810..1399671690881187.1178238-CDS-C-linearis_contig87:139810..139967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 139811..139967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.7548199-UTR-C-linearis_contig87:139967..1399761622930668.7548199-UTR-C-linearis_contig87:139967..139976Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 139968..139976 -
1690881187.1326725-UTR-C-linearis_contig87:139967..1399761690881187.1326725-UTR-C-linearis_contig87:139967..139976Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 139968..139976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16282.1

>prot_C-linearis_contig87.16282.1 ID=prot_C-linearis_contig87.16282.1|Name=mRNA_C-linearis_contig87.16282.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MSMKQDFCDALIDACGDEISFGGPVEYGGLTYCEQHVGTSGTDSFWSYPY
SDPLIVPGELTELFPDINGPVDFPDGTVSMRQSPDGSMYWIVGLEGQVKG
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mRNA from alignment at C-linearis_contig87:137089..139976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16282.1 ID=mRNA_C-linearis_contig87.16282.1|Name=mRNA_C-linearis_contig87.16282.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2888bp|location=Sequence derived from alignment at C-linearis_contig87:137089..139976- (Chordaria linearis ClinC8C monoicous)
TGGGACGGCATGAGCATGAAGCAAGATTTCTGTGATGCACTCATCGATGC
TTGCGGCGATGAGATCTCCTTCGGGGGCCCGGTGGAGTACGGCGGTCTGA
CCTACTGCGAGCAGCACGTCGGCACCAGCGGCACGGATTCGTTCTGGAGC
TACCCCTACTCCGACCGTGAGTGTGATATGCCGTTGTGTGGCGAGTTCGA
TCGCGTATCGTTGTTGTGTAGTGAATTATATCGTGGGCGCGTGTTGTGGT
TTGTGCCTGTACTCGATGGAAGCAGCGGTAGAGTACACGTGGTATAGTCT
AGTCTAGTTTAGATCGTTCGTTTTCCCACAAAACTCCAAAATCACTCCGG
TTTTTTTTCTGAGCGATCCACATATTATCCCCTGATGACATCCGCGACAT
ACCGTGAGAAAGGCCTGATTCAGGCGGATCTCTTGATCGGAGCAGATTTT
TTTTCTTCTTTTCGTTGTCGAGAAAATCGCGATTCCGTCGAGATTTGGGA
AGAATTTGCGTGGTTTATTTGATCTACGTAGTGTGAACTCGTTTTTTTTT
ACACCGGTTTCGAACAGCTCTCATAACGGGGCTCATGGAGACCCAACTCA
GTAAAAACATCGCTGCAATTTGACGGGATAACGGGCAGAAATCCGTGTTC
AGGCAGCCTCAGCTGTGTGTTTTTGGGGGGGAAATTGGACCGATAGGACA
AGAAAAACTCAACGGATTCCGTAGAATTGGACCTGCACCTAGGTCGGACT
TTTTTCCTATTTAAAAAAGTAAAAATTGAGCGAGTTATGGCCTCTCAAAG
TTTTGGCCGCACACACACCAGAACACAACGCACAAGATCACCTATACAGC
AGTACCTATCTACAGCACCGGGCTTCAGGGACACCTGAAGACCCGGGAGT
TGAAGAAGTGGACAAGCCACCGTTCGGCCACCGACTTGGCCGACGATGTG
GTGCTGGCCTGCAGCTGCCCGACAACCTCGGAGAGCCGCAAGGCCAAAGA
GTTGGCGACTCTCGCCGCGGCGAAGCAGGCCAGACTTGGGCCTAACGAGG
CTATCGATAAGGTTCTGAAGAGGTTCAAGGAGATGAACATTGCCCCAATC
TCTATATAGAGACGAGGATCTCTCTATATAGATGAGGGCAGCAGCACCGC
CCCAGCTACATAGATAAATATGACAAAGGAGGTTCGGCGCGTGTTGAATC
TAATGTCGTTGTTGCATGTTGGGCCGAAGGCGGTAGAGGCATCTAGACTG
GCCACACCGCAGAGATGTATCCTAGATAGGGAATAGTTATCTATATTTTG
TGTGACTTGCACGTTCCATGTGTAGAGCGGGTCGATTGTGGGTCGCTCGG
GGAAATTATTTCGTCTCTCGGGCTAACTCGGTATCGTTTCGGGACAATTT
CGGGATAATTTCGGGGTAAATATTTTCGAAAACGGCCACTTTTGTCCGAT
TTATTTTTTTGACACCGGATTTGGATTCCTCTCGGCCGTGCGGTTCGTGC
CAACTTTACTTCACGTTTCAACTCTCAAAATCGAACGAGAAAAAGGGGGG
GACCCGCTATGGAAAAATTTAACTGTCCAGACTCAACATTCCGAGTCTGG
AGTAAGCTCGACGACTACTGCTGTTGCCTAAATGACTGCTGTTACAATAT
GGGTACATGTCCAGCCAAGGCATCCAAACTTGTGCACGCGTGGTGAACGC
ATTGCCTGCGCCTGGACTTGACCCTCTGGAGATGAAGTCTAGAGTCTAGA
GGTAGCACCGATTTCGGCCTGAACATGGATGTGCTTGGGGACGCAGATAG
CATTTTATGCGACTGAGATCGAACTACGCACGGCGATCGGGGCTCAGCGC
AGTGCCGGCCTGGTTAGGGAAACCGACTGGCTTCATCGACCTGCCGCAAC
ATGCGGAAAAGGGGGCCTTCGTACCTCTCGACCTCGAAGCGTCCGTATCT
GTAAGACATGACTCTCCAAATTCGGCATGGGCTGTTTGCCCAAACCTCTA
ACCCTCGTCACCCCGTCGCCGCGACTCCCGTTTGTCCGCTCCTTCTTTCT
ACTTCCTGGCCAACCGGGACTCCAACCAATCAACACCTCTGTCAGGCCCT
TTGGACCAATCGATGCCTCCATTTGTCTTGTGCTTTCGCGCGCCCGACCG
GCCGCTCGCTTGTTCGCTCGTCGCCGTCAAACGCTTCGTTGTCGGCAGCA
CTTATCGTCCCTGGCGAACTGACCGAGCTGTTCCCGGACATCAACGGACC
AGTAGACTTCCCCGACGGCACTGTCAGCATGCGTCAGGTTAGGTTCCTTG
TGCGCGTGGCGCGTCAAGAGAGAAGATGGAGTCCGACTTCTTCTTTGATC
GAATGTTTCTTGTTGCACTTGGCCGTCTTCGTTGCCTTATGTAGTTGGAA
GAGAAAGAACCAGAAGGCCCCGTGGAGGGCGACTGAGCCAGGACCCGCGG
GCGTAGCGGTAATCATTCAGCGGTGGTGGCGCGTTGGGATACATACTCGC
TTGTACGATACGCCCTCGCTGGCAATATGCCCAAGCAGAATCCGAGCGTT
TTTGGTTTGTGTACGCACACAACCGGTCCTCTTCGGTGCCGCTCCGGTTT
TCTTGCGCAAGAGCGGGCGTTTCGTAGCTCAAGTTGTCGTGACGCAGGTG
CGAATGCCTCCGGGTGTTGCTGTTGTTGCGGCACTGACTGCCGTGCCCGT
TTATCGTGCTTCTTCTGACAATGGAGTTTTTCTCGTCCTTTTTACGTTAC
TGGCCGATTCATGTGTGTATCGCGTAGTATCGCCTTCTTGAGCGTTCTGA
CCCCTCCCAACCCCACCACGACCGTCAACATCAGAGCCCTGATGGAAGCA
TGTACTGGATTGTGGGCCTGGAGGGACAAGTCAAGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig87:137089..139976-

>mRNA_C-linearis_contig87.16282.1 ID=mRNA_C-linearis_contig87.16282.1|Name=mRNA_C-linearis_contig87.16282.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig87:137089..139976- (Chordaria linearis ClinC8C monoicous)
ATGAGCATGAAGCAAGATTTCTGTGATGCACTCATCGATGCTTGCGGCGA
TGAGATCTCCTTCGGGGGCCCGGTGGAGTACGGCGGTCTGACCTACTGCG
AGCAGCACGTCGGCACCAGCGGCACGGATTCGTTCTGGAGCTACCCCTAC
TCCGACCATGAGCATGAAGCAAGATTTCTGTGATGCACTCATCGATGCTT
GCGGCGATGAGATCTCCTTCGGGGGCCCGGTGGAGTACGGCGGTCTGACC
TACTGCGAGCAGCACGTCGGCACCAGCGGCACGGATTCGTTCTGGAGCTA
CCCCTACTCCGACCCACTTATCGTCCCTGGCGAACTGACCGAGCTGTTCC
CGGACATCAACGGACCAGTAGACTTCCCCGACGGCACTGTCAGCATGCGT
CAGCACTTATCGTCCCTGGCGAACTGACCGAGCTGTTCCCGGACATCAAC
GGACCAGTAGACTTCCCCGACGGCACTGTCAGCATGCGTCAGAGCCCTGA
TGGAAGCATGTACTGGATTGTGGGCCTGGAGGGACAAGTCAAGGGGAGCC
CTGATGGAAGCATGTACTGGATTGTGGGCCTGGAGGGACAAGTCAAGGGG
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