mRNA_C-linearis_contig87.16280.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16280.1
Unique NamemRNA_C-linearis_contig87.16280.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.070e-16
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLAT-DTAFTDGVDICGDREVEGNAIVG 174
            +AV+NNE+NP C G DRS F FP+YEYCH  Y +  D  FT GVDICGDR + GNA++G
Sbjct:  364 EAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSVGDDEFTAGVDICGDRVLLGNAVIG 422
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BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.700e-15
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLAT-DTAFTDGVDICGDREVEGNAIVG 174
            +AV++NEFNP C G  RS F FP+YEYCH  Y +T D  FT G DICGDR + GNA++G
Sbjct:  427 EAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTGDDEFTAGNDICGDRVLLGNAVIG 485
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZF5_9PHAE2.070e-1661.02GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI2.700e-1559.32Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:131517..133520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog2880.D7G4P3
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-13_003110.1
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size300
Cds size216
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16280.1prot_C-linearis_contig87.16280.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 132016..133520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.4573174-UTR-C-linearis_contig87:131516..1315401622930668.4573174-UTR-C-linearis_contig87:131516..131540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 131517..131540 -
1690881186.994733-UTR-C-linearis_contig87:131516..1315401690881186.994733-UTR-C-linearis_contig87:131516..131540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 131517..131540 -
1622930668.472121-UTR-C-linearis_contig87:131956..1320151622930668.472121-UTR-C-linearis_contig87:131956..132015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 131957..132015 -
1690881187.006994-UTR-C-linearis_contig87:131956..1320151690881187.006994-UTR-C-linearis_contig87:131956..132015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 131957..132015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.4852457-CDS-C-linearis_contig87:132015..1320591622930668.4852457-CDS-C-linearis_contig87:132015..132059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 132016..132059 -
1690881187.017034-CDS-C-linearis_contig87:132015..1320591690881187.017034-CDS-C-linearis_contig87:132015..132059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 132016..132059 -
1622930668.5009916-CDS-C-linearis_contig87:133116..1332101622930668.5009916-CDS-C-linearis_contig87:133116..133210Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 133117..133210 -
1690881187.0267653-CDS-C-linearis_contig87:133116..1332101690881187.0267653-CDS-C-linearis_contig87:133116..133210Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 133117..133210 -
1622930668.5199895-CDS-C-linearis_contig87:133442..1335201622930668.5199895-CDS-C-linearis_contig87:133442..133520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 133443..133520 -
1690881187.0360546-CDS-C-linearis_contig87:133442..1335201690881187.0360546-CDS-C-linearis_contig87:133442..133520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 133443..133520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16280.1

>prot_C-linearis_contig87.16280.1 ID=prot_C-linearis_contig87.16280.1|Name=mRNA_C-linearis_contig87.16280.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLATDTAFTDGVDICGDRE
VEGNAIVGSCTSLSRTTTACG*
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mRNA from alignment at C-linearis_contig87:131517..133520-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16280.1 ID=mRNA_C-linearis_contig87.16280.1|Name=mRNA_C-linearis_contig87.16280.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2004bp|location=Sequence derived from alignment at C-linearis_contig87:131517..133520- (Chordaria linearis ClinC8C monoicous)
CAAGCTGTGCAGAACAACGAATTCAACCCAATCTGCAGTGGATCCGATCG
CTCGCCGTTCGAGTTCCCCATCTACGAGGTATCTAACATTCAGGCCCAGG
GAAGCTAAACCAGTAGTTCAGGCCGGCGGTGAACCCCGCTAGATAGACGA
GAGCTCCCCCTGGATTTCCTCCGCGATCAACTCTTTCTCGCGTCCATTCT
ACGGATCCGCGTCCAAACTACGCCGCTGACTCGACGCGTTCAACCACCCG
CTCCTGTCCACTTCCATCACTTTGCGGTTTCGTTTTGCGCGACACCACAA
CTTGTAACAGTATTGCCATTTGAGCTACCTAGCAACTGACACCGCGTTCA
CGGACGGCGTCGACATCTGCGGAGACAGGGAGGTCGAGGGAAATGCCATT
GTAGGTAAGTTCGGCTAGTTTATCTGTAGACTACGCGAGAAATACGCAAT
GATTGGCGACTCATTCGTGTCGTTTCCCCTGCAATCGTTTCTGCCCACCA
ACTTTAAGACTACTGTAGTTTTTAGGACGGGGGGCGTATTTATTCAGTTC
CACACCGCCTGCACTCGGTACGGAACAGCCGTTTCGCCCTTCCTCACGAG
AATAAAGTGACAGCATGATCAGGCGTTCCGTCGTCTTTGCCGAGACCGTC
CGACGTGGCCAGCTTCCTCCGAAAACATTCGATCCGAGCAAAACCTGGTT
GTTGTCGCTCGGCTTCACCAGCGAGACAACGAGTTTGTGACATTCGAGAG
TAGCGTCGGTACCCGAGTAGAGGGAGTAAGGGGGCCCCACCGGTTTCTGT
AGCGGTCGGCCGTCGCTACTCTGTAGTTTGGTTTACCCTTTTGTGTCTTG
TTTGGTACAGCCTGGCCTCAATTTGGCCCTGTGGTGCGGGTCAGATCCCA
GATGAGTGAATGATTGCCAGCGCAGAGTCTGCTGGTGCCGTAGCGTCGCC
GTCCTTCGAGTGAATGTAGGTCCGGGTTTCATCTGGTATGCTCGCGCTCG
TGCGGCGCTGGCTCTGCCCAGAAAGAAAATATACCTCCTTCCATCGCTAT
GTTTTACCCACACACATGGCCATAGTCTATACTAAATACCCTTGCGGGTG
ATCCTCAAAGAACCGAACATCGACACCTCAATGGCATTGTAGGAGATAGA
CGCCTGAAACGCGCCCAAGCAAATCGTCCGACACGGCCATGCGGGAGCGA
AATAGCACATGTACACCACCACCACCAACGACAACGACAACGGCGATGAC
ACACGCCCATTGAAAATTCCCGCAATCAGGTGGATTTGTCTATCGTGGTA
ATTACTTCTCGGACATACTCAGCGGCGCCTACATCTTCGCGGACGCGGTC
AGCAGGTGATATCGAGAGACTACCACCCATTTCGCACGCCGGCGTGTTGT
TGGTATGCTGCGATGTGACGTGAAGCTCACGCGAACATTCCGCTGGTTTC
TGCGCTCGCAGGTTCGTGCACTTCATTATCCAGAACGACGACGGCGTGTG
GGTGAGCGGCACCATCATCAGCGAGACAAACGAAGTCTTCGTCTCCTTTT
CCGAGGACACCAACGTGAGTCGCTCGCGTCACCCCGCTCGCCCACGGGAC
GGGAACACCCTTGCGTGCGTACTGCAAATTTCGGCGTAATGCACGAACGG
CACAGTTTGACGCAATGGGCAAGCAAGGGAAGGACGAGAACGGGAAGAAG
AACGGGTCGCAAGATATATTAGGAGTATCTCTAGCTCTGTTTCGATCCCC
CATGTCTGACACCACCGCGCAATGGAACAGCCTACCACGGGGCGGCACCG
CGGCAAGGCCCCGTGTCCATTCTGCTTGGGTAGTTTACCCCGGGCAGCTC
GTTGACTCACCCGCGTACCTCTGCACGCGGCCGTTCCACTCATCTAGTCG
ACTCCTACCGCTGCTATTTCTTCCGCGTGGCCTTACCGCAAATCGCGCCT
GTCTGGCTTGCCTCCGCATGTCGTTACCAGGGCGAGCTGTACCTCATCAC
GGGG
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Coding sequence (CDS) from alignment at C-linearis_contig87:131517..133520-

>mRNA_C-linearis_contig87.16280.1 ID=mRNA_C-linearis_contig87.16280.1|Name=mRNA_C-linearis_contig87.16280.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig87:131517..133520- (Chordaria linearis ClinC8C monoicous)
CAAGCTGTGCAGAACAACGAATTCAACCCAATCTGCAGTGGATCCGATCG
CTCGCCGTTCGAGTTCCCCATCTACGAGCAAGCTGTGCAGAACAACGAAT
TCAACCCAATCTGCAGTGGATCCGATCGCTCGCCGTTCGAGTTCCCCATC
TACGAGTATTGCCATTTGAGCTACCTAGCAACTGACACCGCGTTCACGGA
CGGCGTCGACATCTGCGGAGACAGGGAGGTCGAGGGAAATGCCATTGTAG
TATTGCCATTTGAGCTACCTAGCAACTGACACCGCGTTCACGGACGGCGT
CGACATCTGCGGAGACAGGGAGGTCGAGGGAAATGCCATTGTAGGTTCGT
GCACTTCATTATCCAGAACGACGACGGCGTGTGGGTGAGTTCGTGCACTT
CATTATCCAGAACGACGACGGCGTGTGGGTGA
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