mRNA_C-linearis_contig86.16249.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16249.1
Unique NamemRNA_C-linearis_contig86.16249.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:610183..611227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003030.2
Exons2
Model size1026
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16249.1prot_C-linearis_contig86.16249.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 610236..611121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.4383438-UTR-C-linearis_contig86:610182..6102351622930649.4383438-UTR-C-linearis_contig86:610182..610235Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 610183..610235 +
1690881178.1843286-UTR-C-linearis_contig86:610182..6102351690881178.1843286-UTR-C-linearis_contig86:610182..610235Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 610183..610235 +
1622930649.5289109-UTR-C-linearis_contig86:611121..6112271622930649.5289109-UTR-C-linearis_contig86:611121..611227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 611122..611227 +
1690881178.213492-UTR-C-linearis_contig86:611121..6112271690881178.213492-UTR-C-linearis_contig86:611121..611227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 611122..611227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.4671578-CDS-C-linearis_contig86:610235..6109331622930649.4671578-CDS-C-linearis_contig86:610235..610933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 610236..610933 +
1690881178.194327-CDS-C-linearis_contig86:610235..6109331690881178.194327-CDS-C-linearis_contig86:610235..610933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 610236..610933 +
1622930649.4888606-CDS-C-linearis_contig86:610952..6111211622930649.4888606-CDS-C-linearis_contig86:610952..611121Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 610953..611121 +
1690881178.2034955-CDS-C-linearis_contig86:610952..6111211690881178.2034955-CDS-C-linearis_contig86:610952..611121Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 610953..611121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16249.1

>prot_C-linearis_contig86.16249.1 ID=prot_C-linearis_contig86.16249.1|Name=mRNA_C-linearis_contig86.16249.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
MQWLAAMVSGGASAKPEPQTALLRPSDVEPSASASSAGGGDSSSDSPSGS
DDKDVVADKARGSEQAAGPAGDPLPSPPTAAQVPQGVGAGPTSSSSTPAA
AAAAAAAGLGQEQHQHQPPAAVPWLDSLLSKASRSPTFEQQQLELEQQRQ
RGQKIDSPTTAAHHVPPPPPPPPQQQHLLSPSSLVPPPQQQQQRQPSSAV
AAASNSSEREINDDSSAQGQQQQQQQQQQQQQHSRSNRDPAAATRHRPGP
GEAGASGEPEAAKAAGRKGRAKTGRGERRPRERESEKV*
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mRNA from alignment at C-linearis_contig86:610183..611227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16249.1 ID=mRNA_C-linearis_contig86.16249.1|Name=mRNA_C-linearis_contig86.16249.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at C-linearis_contig86:610183..611227+ (Chordaria linearis ClinC8C monoicous)
CCAGTCAGTGCTACATCCCACGGGAGGGAGAAGAGAGGAAGCGCGCTTGA
AACATGCAATGGCTCGCTGCTATGGTTAGCGGCGGCGCGAGCGCGAAGCC
GGAGCCCCAAACAGCCCTCCTCCGGCCCTCCGATGTTGAACCGTCGGCAT
CGGCATCATCTGCCGGCGGCGGCGATAGCAGTAGCGATAGCCCTAGCGGT
AGCGACGACAAGGATGTTGTTGCCGACAAGGCCAGGGGAAGCGAACAGGC
TGCCGGGCCAGCCGGTGATCCTCTACCAAGTCCACCAACAGCCGCACAAG
TTCCGCAAGGTGTTGGTGCCGGCCCGACATCATCTTCGTCAACACCAGCA
GCAGCAGCAGCGGCGGCGGCGGCAGGACTAGGCCAGGAGCAGCACCAGCA
CCAGCCGCCAGCGGCGGTACCCTGGCTAGATTCGCTTCTGTCCAAGGCCT
CGCGCAGCCCCACCTTCGAGCAGCAACAGCTAGAGCTAGAGCAGCAGCGG
CAGCGAGGGCAGAAGATAGATTCGCCAACAACAGCAGCACATCATGTTCC
GCCGCCACCGCCTCCGCCTCCACAACAGCAACACCTGCTCTCGCCGTCGT
CGCTAGTACCACCACCCCAGCAGCAGCAGCAGCGGCAGCCGTCCTCAGCA
GTAGCAGCAGCGTCAAACAGCAGCGAACGGGAAATCAATGATGATTCATC
GGCGCAGGGACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAACAGAGATCCCGCGGCGGC
AACAAGGCACAGGCCAGGACCGGGGGAAGCGGGGGCGAGCGGCGAACCGG
AAGCGGCAAAGGCGGCGGGGAGAAAGGGACGGGCGAAGACAGGACGGGGG
GAAAGGCGGCCCAGGGAAAGGGAAAGCGAAAAGGTGTAGGCGGTAAGGAG
AAAGGCGCCGGGGCCGGCGCGGCACAGCAGCAGGAGGAGGGCGTCAAGGC
CGAACTGCTGGATATACTGTTTAGGGGAGCAGGAAAGGAGGAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig86:610183..611227+

>mRNA_C-linearis_contig86.16249.1 ID=mRNA_C-linearis_contig86.16249.1|Name=mRNA_C-linearis_contig86.16249.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig86:610183..611227+ (Chordaria linearis ClinC8C monoicous)
ATGCAATGGCTCGCTGCTATGGTTAGCGGCGGCGCGAGCGCGAAGCCGGA
GCCCCAAACAGCCCTCCTCCGGCCCTCCGATGTTGAACCGTCGGCATCGG
CATCATCTGCCGGCGGCGGCGATAGCAGTAGCGATAGCCCTAGCGGTAGC
GACGACAAGGATGTTGTTGCCGACAAGGCCAGGGGAAGCGAACAGGCTGC
CGGGCCAGCCGGTGATCCTCTACCAAGTCCACCAACAGCCGCACAAGTTC
CGCAAGGTGTTGGTGCCGGCCCGACATCATCTTCGTCAACACCAGCAGCA
GCAGCAGCGGCGGCGGCGGCAGGACTAGGCCAGGAGCAGCACCAGCACCA
GCCGCCAGCGGCGGTACCCTGGCTAGATTCGCTTCTGTCCAAGGCCTCGC
GCAGCCCCACCTTCGAGCAGCAACAGCTAGAGCTAGAGCAGCAGCGGCAG
CGAGGGCAGAAGATAGATTCGCCAACAACAGCAGCACATCATGTTCCGCC
GCCACCGCCTCCGCCTCCACAACAGCAACACCTGCTCTCGCCGTCGTCGC
TAGTACCACCACCCCAGCAGCAGCAGCAGCGGCAGCCGTCCTCAGCAGTA
GCAGCAGCGTCAAACAGCAGCGAACGGGAAATCAATGATGATTCATCGGC
GCAGGGACAACAACAACAACAACAACAACAACAACAACAACAACAACAAT
GCAATGGCTCGCTGCTATGGTTAGCGGCGGCGCGAGCGCGAAGCCGGAGC
CCCAAACAGCCCTCCTCCGGCCCTCCGATGTTGAACCGTCGGCATCGGCA
TCATCTGCCGGCGGCGGCGATAGCAGTAGCGATAGCCCTAGCGGTAGCGA
CGACAAGGATGTTGTTGCCGACAAGGCCAGGGGAAGCGAACAGGCTGCCG
GGCCAGCCGGTGATCCTCTACCAAGTCCACCAACAGCCGCACAAGTTCCG
CAAGGTGTTGGTGCCGGCCCGACATCATCTTCGTCAACACCAGCAGCAGC
AGCAGCGGCGGCGGCGGCAGGACTAGGCCAGGAGCAGCACCAGCACCAGC
CGCCAGCGGCGGTACCCTGGCTAGATTCGCTTCTGTCCAAGGCCTCGCGC
AGCCCCACCTTCGAGCAGCAACAGCTAGAGCTAGAGCAGCAGCGGCAGCG
AGGGCAGAAGATAGATTCGCCAACAACAGCAGCACATCATGTTCCGCCGC
CACCGCCTCCGCCTCCACAACAGCAACACCTGCTCTCGCCGTCGTCGCTA
GTACCACCACCCCAGCAGCAGCAGCAGCGGCAGCCGTCCTCAGCAGTAGC
AGCAGCGTCAAACAGCAGCGAACGGGAAATCAATGATGATTCATCGGCGC
AGGGACAACAACAACAACAACAACAACAACAACAACAACAACAACACAGC
CGCAGCAACAGAGATCCCGCGGCGGCAACAAGGCACAGGCCAGGACCGGG
GGAAGCGGGGGCGAGCGGCGAACCGGAAGCGGCAAAGGCGGCGGGGAGAA
AGGGACGGGCGAAGACAGGACGGGGGGAAAGGCGGCCCAGGGAAAGGGAA
AGCGAAAAGGTGTAGCAGCCGCAGCAACAGAGATCCCGCGGCGGCAACAA
GGCACAGGCCAGGACCGGGGGAAGCGGGGGCGAGCGGCGAACCGGAAGCG
GCAAAGGCGGCGGGGAGAAAGGGACGGGCGAAGACAGGACGGGGGGAAAG
GCGGCCCAGGGAAAGGGAAAGCGAAAAGGTGTAG
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