mRNA_C-linearis_contig86.16234.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16234.1
Unique NamemRNA_C-linearis_contig86.16234.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE)

HSP 1 Score: 580 bits (1496), Expect = 1.950e-204
Identity = 287/365 (78.63%), Postives = 316/365 (86.58%), Query Frame = 1
Query:    1 MSDDELSGLYSRISVMREREVEIDRVCAYNWRKGTCSHDLLFQAADPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGHKDRVTGVARLDGGRLASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQ-------------DVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGAPAVGGGGD 1056
            +S+DE+SGL+ RIS +R+REVEIDRVCAYNWRKGTCSHDLLFQAADPIQ+LRWV D LAFGTD GGTWII+RQTGFVINVFEGHSG VTALYFDGELLVTGG DKTVRVQ NSRD LEKEQLGE LHVLEGH  R+TGVARLDG RLA+ S DG+LRVWD+ +GE LHDV+LPSPA CLGAA      GLMDGRV+AWEAKR ERAP EIL++DAH+GAVT LSFPKQ             DVLLTGGGDGRVKYWDL QGG A GNR++VGGE+ TH+F+GHAAPV+AVQCDEHRVVSAA DGTVSVWD+R+G+ELFQIYGHA GV SLQFDREQLVTDGTGE+LYLHDFTGRRGAPAV G G+
Sbjct:  145 ISEDEMSGLFRRISALRKREVEIDRVCAYNWRKGTCSHDLLFQAADPIQHLRWVGDHLAFGTDGGGTWIISRQTGFVINVFEGHSGAVTALYFDGELLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAA------GLMDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQVVMDDWFGRSRYVDVLLTGGGDGRVKYWDLNQGGAAEGNRFEVGGESYTHVFRGHAAPVTAVQCDEHRVVSAAKDGTVSVWDIRSGQELFQIYGHADGVSSLQFDREQLVTDGTGEALYLHDFTGRRGAPAVMGSGN 503          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 1.380e-153
Identity = 212/258 (82.17%), Postives = 236/258 (91.47%), Query Frame = 1
Query:  268 ALYFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGHKDRVTGVARLDGGRLASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGAPAV 1041
            ALYFDG+LLVTGG DKTVRVQ NSRD LEKEQLGE LHVLEGH +R+TGVARLDG RLA+ S DG+LRVWD+ +GE LHDV+LPSPA CLGAAEGY+VTGL DGRV+AWEAKR ERAP EIL++DAH+GAVT LSFPKQDVLLTGGGDGRVKYWDL QGG A GNR+++GGE+ TH+F+GHAAPV+AVQCDEHRVVSAA DGTVSVWD+R+G+ELFQIYGHA GV SLQFDREQLVTDGTGE+LYLHDFTGRRGAPAV
Sbjct:   11 ALYFDGDLLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAAEGYMVTGLTDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQDVLLTGGGDGRVKYWDLNQGGAAEGNRFEIGGESYTHVFRGHAAPVTAVQCDEHRVVSAATDGTVSVWDIRSGQELFQIYGHADGVGSLQFDREQLVTDGTGETLYLHDFTGRRGAPAV 268          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA)

HSP 1 Score: 231 bits (588), Expect = 8.710e-71
Identity = 120/255 (47.06%), Postives = 167/255 (65.49%), Query Frame = 1
Query:  277 FDGELLVTGGYDKTVRVQWNS-RDSLEKEQLGEVLHVLEGHKDRVTGVARLDGGR-LASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAH-KGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGA 1032
            FDGE L+TGG D+TV+V  N+       ++LGE LH  +GH +RV GV R +G R + S + D  L  WDL+TGE + ++ LP+P  CLGAAEGYL  G+M+G V  +  K  E    E+L+  A+ + AV ++ FP Q  ++TGGG+G V++WDL +GG   G  Y + G  I H +KGH APV A+Q DE ++VSAA DG V V+D++ GEELF+I GH+  + SLQFDR  L+TDGT  ++ +HDF    G+
Sbjct:    3 FDGEFLITGGADRTVKVHRNTISPGPGPQRLGECLHTWKGHTERVIGVVRPEGTRQVVSAAPDAKLIFWDLDTGEKIRELELPAPILCLGAAEGYLAVGMMNGNVSVFTDKTGE----EVLTWQAYQRAAVRSIYFPSQTRIMTGGGNGVVRFWDLKEGGTPDGGFYTIEGRGIAHEYKGHNAPVVALQGDEVKIVSAASDGVVRVFDMKMGEELFRIEGHSDDIRSLQFDRRFLITDGTMNTIVVHDFASEEGS 253          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A7S3XJD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJD3_HETAK)

HSP 1 Score: 171 bits (434), Expect = 8.160e-47
Identity = 109/330 (33.03%), Postives = 166/330 (50.30%), Query Frame = 1
Query:   70 DRVCAYNWRKGTCSHDLLFQAADPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGH-KDRVTGVARLDGGRLASCSVDGTLRVWDLETGEA--LHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEA----KRAERAPAEILSIDAHKGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRY--DVGGEA---ITHIFKGH-AAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQI-YGHAGGVHSLQFDREQLVTDGTGESLYLHDFT 1017
            D +   NWR G     +L  A   I  ++     LA  ++ G   ++N  TG + +    H G V+A+++DG +L+T G D  +RV  +          G    V +GH    + G+ RLD  R AS   DG + +WD +      + ++  P    CL AA  Y+  GL DGRVVA+ +       +     +L I AH G VT+L F +Q+ L TGG DG V+ W++  GG   G     D+ GE    +  ++KGH  + V+AVQ D  +++S + DG +  W + TGEE F +   +   V ++QFD   L+TDG G+ L L DF+
Sbjct:   11 DYIVENNWRTGQFQQHILIGADQRISAMKLSNSMLAVASELGDVHVMNLATGQIQSEIFPHRGAVSAMHWDGNVLITAGADNYIRVLPSPMTKAGSS--GRTSLVFKGHLHHHIMGLVRLDPNRFASAGTDGKILIWDHKKSPTSPVMEIQAPDAILCLDAAGDYITAGLADGRVVAYSSISGHDLVDGYSKALLEIQAHNGPVTSLHFNEQNFLATGGKDGVVRLWNILGGGDHGGQHLVLDLPGEPTKKLNRVYKGHPGSSVTAVQADNKKIISTSLDGHIKAWCIETGEEFFSLRVENNEKVLNMQFDSTLLITDGHGKHLILKDFS 338          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A7S3YJS6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJS6_HETAK)

HSP 1 Score: 144 bits (363), Expect = 3.340e-38
Identity = 79/178 (44.38%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  499 LHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAE-ILSIDAHKGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRY--DVGGEAITHI---FKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDF 1014
            + +V LP+PA CLG A GYL  GL+DGRVVA+ A RA    A  +L I AHKGAVTAL F +++ L+TGG DGRV  W+L  GG    +    ++ G+ +  +   F+GH+  ++A+Q D +++VSA+ DG V VWD+ TG+ LF++YG    V  + +D + LVTDG   S  +++F
Sbjct:    1 VFEVRLPAPALCLGQAGGYLTAGLLDGRVVAYSAARAPSPSAPPLLVIQAHKGAVTALHFTEENFLVTGGQDGRVLVWNLFDGGDHDRDTVAMELPGDYVRVLNRRFEGHSGAITALQADCNKIVSASTDGAVKVWDITTGQILFEVYGD-NSVCCIHYDSKTLVTDGVKNSAIVYNF 177          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: R7QUA7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUA7_CHOCR)

HSP 1 Score: 138 bits (348), Expect = 1.470e-33
Identity = 108/365 (29.59%), Postives = 176/365 (48.22%), Query Frame = 1
Query:    4 SDDELSGLYSRISVMREREVEIDRVCAYNWRKGTCSHDLLFQAA---DPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHV---------------LEGHKDRVTGVARLD--GGRLASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAE-GYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQ-DVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGA 1032
            SD     L  R++++R++EV  DR  A NWR G   +D    AA   D ++ L + +D L  GT +GG    +  +G  +     H+G VTA+++    +V+ G        W + +  EK  L + L                 ++ H D+++ + RLD    R+ S S+DGT+RV  L+TGE L  + +  P   +   E GYL+ G   GRV+A++A+R       +LS+  H    TAL+F ++  VL+TG   G +K W                   +      H A V +VQ D  +VVS++ DG+V+V+ + + + L+ I G    + +  FD  +L+ DGT + +  H F   +GA
Sbjct:   90 SDASWQVLQRRLALLRDKEVIRDRTIARNWRSG--QYDASVVAAVTRDYVRKLSFQDDFLVMGTASGGVVFSDLVSGRRVTCRHVHTGQVTAIHYRDSYMVSAGASDCEVAVWQT-ERYEKRSLWDELDARGEAVDGVLTLPKVRIKTHIDQISAL-RLDVKNSRVYSASIDGTVRVSHLDTGEELSMIRVGEPVLSMTLTEKGYLLLGSTSGRVLAYQAERGFH----LLSMVCHNSNTTALAFWEETQVLVTGDAAGNLKVWSFND-------------STLLGTLPKHEAAVMSVQIDGSKVVSSSRDGSVAVFGLASRQRLYSIVGFTKYLGAATFDDVRLIADGTNDFVICHRFDSDQGA 433          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A5J4YHW5_PORPP (F-box/WD repeat-containing protein pof11 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHW5_PORPP)

HSP 1 Score: 139 bits (350), Expect = 5.090e-33
Identity = 118/389 (30.33%), Postives = 182/389 (46.79%), Query Frame = 1
Query:    1 MSDDELSGLYSRISVMREREVEIDRVCAYNWRKGTCSHDLL-FQAADPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVF-------------------------------EGHSGGVTAL-YFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGHKDRVTGVARLDGGRLA-SCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAK------RAERAPAE--------ILSIDAH-KGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTG 1020
            ++D  LS L  RI  +RE E   DR  A NWR G CS+ +  F   D ++ LR   D +AFG+  G  ++ N +T   + +F                                G S   TAL +++GEL+++G  +  +     S  SL       +   LEGH D +TG+   + GR+  S ++DG L+V   + GE L  + + +P   L  ++ Y++ G   G V+A+  +      R +R+  +        +LS +AH  G VTA+       L+T   DG ++ W LT+GGP                F  H+  V  +QCDEH++VSAA DGTV V D   G  L+ + G    + S +++   LVTDGT   + +HDF+G
Sbjct:  233 ITDTALSLLADRIQDLRELETARDRRRASNWRNGKCSYKVCAFINYDFVRKLRICGDLVAFGSCAGRVFVYNMRTQQRVAMFMANFVSSEKSKASGVAALKAIPGSQAPKESDRGRSNETTALDFWNGELIISGARNGLI-----SALSLSTR----IESQLEGHSDTITGILIAEAGRVVFSTALDGMLKVQTTK-GELLRQIDVGAPVLSLCMSDDYVLVGTKLGNVLAYVVRDLLQPPRPDRSQGDAPNSACTPVLSFEAHGSGNVTAMH-AHNSRLVTAAADGELRVWSLTEGGPPL------------QCFHDHSQAVIDIQCDEHKIVSAARDGTVRVRDF-DGSLLYALTGFTKYIGSARYNDNLLVTDGTNNVITVHDFSG 597          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A4D9CYU8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.800e-16
Identity = 86/341 (25.22%), Postives = 143/341 (41.94%), Query Frame = 1
Query:   55 REVEIDRVCAYNWRK--GTCSHDLLFQAADPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGEL--LVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEG---HKDRVTGVARLDGGRLASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQDV-LLTGGGDGRVKYWDLTQGGPATG-------NRYDVGGEAI--THI------------FKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGG--VHSLQFDREQLVTDG 984
            R+V I   CA NWR+    C           +Q ++  ED++ +G+D G   + +   G  +   + H+  VTAL +D     +V+   D  V+V       +     G V  V  G   H  RV     LD     S S+DG + V++L+ G  + ++        +   + Y+  GL+ G V A+  +   R+    ++      ++ A       + ++ GG DG ++ + +     + G         +D     +  TH+              GH  PV AV CDE +VVSA++DG+V VWD       F +  H  G  V ++ F+   LV DG
Sbjct:  202 RQVVIAEGCAMNWREEPAFCRPVGHVPGNRKVQQVKLSEDRVMYGSDAGTVGLASASDGRELFRAQAHAALVTALDYDAGTGWMVSAADDGVVKVFREQEREVGGAGGGRVEAVGPGMRHHSSRVVAAEVLDHRWGLSASMDGKIVVFELDGGALVQEMWASDTLLAVTVCKNYVFAGLLGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCAYPLAGNHIRVVVGGQDGALRQFQVRAVMSSEGVWRVPQDRAFDDRLVLVCNTHVDPDTREVDQGFVLTGHRGPVVAVACDEEKVVSASEDGSVIVWDAAKSSPRFMVRAHVDGDLVGAVDFNERYLVNDG 542          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A7S3EAZ8_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EAZ8_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 7.790e-16
Identity = 75/276 (27.17%), Postives = 118/276 (42.75%), Query Frame = 1
Query:   25 LYSRISVMREREVEIDRVCAYNWRKGTCSHDLL-FQAADPIQYLRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGELLVTGGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGHKDRVTGVARLDGG--RLASCSVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQ-DVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCD 840
            +  RIS +R  E E ++  + NW+ G    ++  +   D  + L+    +L  G+  G   + N +          H   VTAL F+G+ +V+G  D TVR+  +  + L+           E     +  +A+L     R  S  V+G+LR WDL TGE L    LPS   C      Y++ G   G V  + A + +     +LS+      VT   + +  D+L+ GG +G V  W+L  G              I   FK H  PV ++Q D
Sbjct:   45 MQKRISKVRNEEEEREKQYSSNWKSGKAKQEVAAYLKEDYFRRLKLFGPKLISGSHTGSIHMFNLRNAKKEWSAAAHGFEVTALDFNGKYVVSGAVDGTVRLMSSKGEPLKLSS--------EARHAGIVTMAQLAVRYKRFFSGCVEGSLRAWDLSTGELLGKDKLPSGILCGSVVGKYVLLGCKSGCVEVYSADKIQH----VLSLKCFTSNVTCFQYDEDSDLLVAGGSNGDVTMWNLDSG-------------EILLSFKAHKGPVMSLQWD 295          
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Match: A0A7S0ENC4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ENC4_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 9.340e-16
Identity = 59/180 (32.78%), Postives = 80/180 (44.44%), Query Frame = 1
Query:  493 EALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEAKRAERAPAEILSIDAHKGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGPATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRTGEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGA 1032
            E L  +V   P + +G  EG+   GL +G VV            E+ S +AH  AV+A+       L           W L + G           E     F GH+  V+A+Q D  +VVSAA DGTV VWDV  G+E F++ G    V SL     +L+ DGT  ++   DF    GA
Sbjct:   20 EELQCLVAAKPIYAMGTCEGFAALGLANGHVVLCSLSPLR----ELFSFEAHAAAVSAVELISPSQL-----------WRLDEAGDD---------ERRLVRFDGHSGAVAALQGDGDKVVSAARDGTVRVWDVEAGKERFRLQGFTRYVGSLHLTPSRLIADGTNNAVVCLDFAPLDGA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY61_9PHAE1.950e-20478.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3C2_ECTSI1.380e-15382.17F-box domain containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z3T4_9STRA8.710e-7147.06F-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3XJD3_HETAK8.160e-4733.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3YJS6_HETAK3.340e-3844.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R7QUA7_CHOCR1.470e-3329.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YHW5_PORPP5.090e-3330.33F-box/WD repeat-containing protein pof11 n=1 Tax=P... [more]
A0A4D9CYU8_9STRA3.800e-1625.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3EAZ8_9RHOD7.790e-1627.17Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ENC4_9EUKA9.340e-1632.78Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:508786..514234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score445.3
Seed ortholog evalue2.7e-122
Seed eggNOG ortholog2880.D7G3C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-21_002790.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1071
Cds size1071
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.3559387-CDS-C-linearis_contig86:508785..5088741622930661.3559387-CDS-C-linearis_contig86:508785..508874Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 508786..508874 -
1690881183.5110233-CDS-C-linearis_contig86:508785..5088741690881183.5110233-CDS-C-linearis_contig86:508785..508874Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 508786..508874 -
1622930661.3725038-CDS-C-linearis_contig86:509339..5095171622930661.3725038-CDS-C-linearis_contig86:509339..509517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 509340..509517 -
1690881183.5248318-CDS-C-linearis_contig86:509339..5095171690881183.5248318-CDS-C-linearis_contig86:509339..509517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 509340..509517 -
1622930661.3899803-CDS-C-linearis_contig86:510240..5103601622930661.3899803-CDS-C-linearis_contig86:510240..510360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 510241..510360 -
1690881183.5341763-CDS-C-linearis_contig86:510240..5103601690881183.5341763-CDS-C-linearis_contig86:510240..510360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 510241..510360 -
1622930661.403432-CDS-C-linearis_contig86:510812..5109491622930661.403432-CDS-C-linearis_contig86:510812..510949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 510813..510949 -
1690881183.5440063-CDS-C-linearis_contig86:510812..5109491690881183.5440063-CDS-C-linearis_contig86:510812..510949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 510813..510949 -
1622930661.4184678-CDS-C-linearis_contig86:511948..5121381622930661.4184678-CDS-C-linearis_contig86:511948..512138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 511949..512138 -
1690881183.5526788-CDS-C-linearis_contig86:511948..5121381690881183.5526788-CDS-C-linearis_contig86:511948..512138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 511949..512138 -
1622930661.4327056-CDS-C-linearis_contig86:512428..5125171622930661.4327056-CDS-C-linearis_contig86:512428..512517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 512429..512517 -
1690881183.561899-CDS-C-linearis_contig86:512428..5125171690881183.561899-CDS-C-linearis_contig86:512428..512517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 512429..512517 -
1622930661.4472985-CDS-C-linearis_contig86:512909..5130221622930661.4472985-CDS-C-linearis_contig86:512909..513022Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 512910..513022 -
1690881183.571894-CDS-C-linearis_contig86:512909..5130221690881183.571894-CDS-C-linearis_contig86:512909..513022Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 512910..513022 -
1622930661.4631348-CDS-C-linearis_contig86:513541..5136301622930661.4631348-CDS-C-linearis_contig86:513541..513630Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 513542..513630 -
1690881183.581406-CDS-C-linearis_contig86:513541..5136301690881183.581406-CDS-C-linearis_contig86:513541..513630Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 513542..513630 -
1622930661.4748788-CDS-C-linearis_contig86:514168..5142341622930661.4748788-CDS-C-linearis_contig86:514168..514234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514169..514234 -
1690881183.5909252-CDS-C-linearis_contig86:514168..5142341690881183.5909252-CDS-C-linearis_contig86:514168..514234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 514169..514234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16234.1prot_C-linearis_contig86.16234.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 508786..514234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16234.1

>prot_C-linearis_contig86.16234.1 ID=prot_C-linearis_contig86.16234.1|Name=mRNA_C-linearis_contig86.16234.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=357bp
MSDDELSGLYSRISVMREREVEIDRVCAYNWRKGTCSHDLLFQAADPIQY
LRWVEDQLAFGTDNGGTWIINRQTGFVINVFEGHSGGVTALYFDGELLVT
GGYDKTVRVQWNSRDSLEKEQLGEVLHVLEGHKDRVTGVARLDGGRLASC
SVDGTLRVWDLETGEALHDVVLPSPAFCLGAAEGYLVTGLMDGRVVAWEA
KRAERAPAEILSIDAHKGAVTALSFPKQDVLLTGGGDGRVKYWDLTQGGP
ATGNRYDVGGEAITHIFKGHAAPVSAVQCDEHRVVSAADDGTVSVWDVRT
GEELFQIYGHAGGVHSLQFDREQLVTDGTGESLYLHDFTGRRGAPAVGGG
GDGAES*
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mRNA from alignment at C-linearis_contig86:508786..514234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16234.1 ID=mRNA_C-linearis_contig86.16234.1|Name=mRNA_C-linearis_contig86.16234.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5449bp|location=Sequence derived from alignment at C-linearis_contig86:508786..514234- (Chordaria linearis ClinC8C monoicous)
ATGTCGGATGACGAGTTGAGCGGGCTGTACAGCCGCATCTCGGTGATGCG AGAGCGGGAGGTGGAGGTGTGCTTATGTAGGACCGCTGTTGTTTGCCTGA TCATGAGGTCTACGTTCTGTCTGCCAGGGCGGACGAGCGTGCTGGGTGAG ATAACCGGCGCTGGCCTTGTTCGTTCTAAATACGGAGTAGCTGCTACAGC AGTAGTTGGAGGCACAGAGCGATCGGCTTCACTCTGAACGTATGACGCAT CGAATTGTGTATTTAGCCCAAATGACCGTGTCGTGTGACTGGCATATCCG CCGCCTACGAGTGGAGCACTTGAGGCATTCGCTGAAGCAGCAGCAGCAGC AGCAGCAGCACGGTCCCCGCTTCCCCTGCGGCCAACGTCCAGCCCTGAAT CAACCCCCCTCAACCCCCCAACCGAATCCCATGTGCGGTTGCCCGTGCTG TCTCCCCCTCCCCCTGCCGTCCTTTGCTTCACGTTCCTCTCTTAACCTTT CTCTCTCCCTCTCTCTCTCTGTGTGTATCTGTCCATCTGTGCGTGTTCGC TCCTCCCTGCTCCCCCCCGGCCCCACCCGTTCCTTGACCCCCCTGCCCAC AAAGATCGATCGGGTGTGCGCGTACAACTGGCGGAAGGGCACCTGCTCGC ACGACCTCCTCTTCCAGGCGGCCGACCCGATCCAGTACTTAAGGTAAGGA GCCCGCTGCCGCTGCCATTGCCGTTGATGTCGTAGACAGCAAGCAGCCTT TAGGGATAAACAGAGAGAAAGTTGATCGGACTGACCGCAAACGGTGCTGC TATTGTTGCGGCGTAAAGTGGGCAAGGAAGCAGACAGGGGGTTGAGGGAG CGAGAGGGAGAGAGAAGAGGGGAGGAGGAAGGCCTATTCTACGTAATAGA GCCGACTGCCTTTGAGGGGTGGCGCGTGATCCGAACTGGACGTTTTTTCT GCGCTTGCGGGTTTGTGCGTGGGTCGTCGTGGATTTGCTGCTGCCTGTGT GGGTTCAGCTATTAATACTGTACCTGGAAATGATCAGCAGCGGCAGCAGC GACAACGTTAGTAGTCACACCACAGCAGACGAACCCCAGGGACCCCCCTC TTTTCTGCACCTCTCACCGCCCACCCAGCAGCTTGTCGAGCCCCCCATCC ATATGATGCATTGTGAAAAAGCAAGAGTACCCCCTCCCGGCCGCCGCCCA ATTCCCGGCAAGGTGGGTGGAGGACCAGTTGGCGTTTGGCACGGACAACG GAGGGACGTGGATCATCAACCGGCAAACGGGGTTCGTGATAAACGTCTTC GAGGGCCACTCCGGCGGCGTGACAGGTGAGCGGGTGGGCGCTGGTTGGCG GCCAGTGAGGAAGACTCGTTGTTGTTGTTGTTGTGGTTGTGGTTGTGGTT GTGGTTGTAGTTGTAGTTGTGGTTGTTGTAGTTGTAGTTGTAGTTGCTGT ATTGTGGTGGTTATTTAATTTGGTGTACGTAGCCGCCGACTACAGTCAGT AGCACGAGGGGTGTGTCTGGGATATCTCCTCACCCTGCCCGCTCCACGCA ACGCCTTCCCGACGTCTGAGACGAAGGTTGAGATATACATGGATCTATCT GCGTACAATAGATCCTTGCGTTTTATGCGTGAGCTCAACACAGCCGTATT TTTACCTGTTGTTTTGTTCGCTTTTTTTTTCTTGTGTACATACGTATATA ATATCTACCTGACGCAGCCTTGTACTTCGACGGGGAACTGCTGGTGACCG GAGGTTACGACAAGACGGTGCGCGTGCAGTGGAACAGTCGAGATAGCCTT GAGAAGGTGAGAGGACTGGTGCAGACCTATGCTCTCCTGGATTGGGGTGT GATGTTTGACTGCGGCTACTACCCGTGGCTGTCAAGCACGACCCTCACCC TTTTTTACACAACAGTGGGGGGGGAATCAATATCAACACAGCAGCAGCAG CAGCAGCAGCAACTGCACCAGCAATGACGACAACAAGGACAGACACACAC CGCCGACCACCATGACCACCACCACCGCCCGCCAACGCACAACCGGTAAT CACCATCTCCTCCAACCACCACCGGAATCTACGACGGCGATCGCAGGAAC AGCTCGGCGAGGTGCTCCACGTGCTCGAGGGCCACAAGGATCGGGTCACG GGGGTCGCCCGGCTGGACGGGGGCAGGCTGGCGTCTTGCTCAGTGGACGG AACCCTGAGGGTTTGGGACCTTGAGACGGGCGAGGCGCTGCACGACGTCG TGCTGCCCTCGCCGGCGTTTTGCCTCGGGGCCGCGGGTGGGTGTTTGAGT GTTTGAGTGTTTGAGTGTTTGAGTTTTTGAGTTTTTGAGCTTGAGCTTGA GCTTGAGCTGAGTTGATCAGGGCTCTCTCCGATCGCGCTCTCTCTCTCTC TCTCTCTCTCATTCGCTTTCTCCGTCTCTGTGTATCTGGTTCTGTTTTTG TTTTTGTTTTTTTGTTTGTGTGTCTGTGTCTAGGTTCTAGGGTGCTTGCT TTGCGCACGCGTGAACGAGGCAGACGAACGAGGTGCATCATGCGTCACAG CAGGGGAGGCATAAGTGTTTCTTAGTTTCTTTGGTGGTAGAGAGGGAGGG GAGCATGCCGCAGAGCGAGCACGCACACGACCGTTGAACTACTGCTGTAC GCTTGTTTCAAACTTGAAATTCAGCAGATACGGTAGTACGTCTGCCATAG TTACAGCAGTAGTTCATGGCGAACCCCATGACCCCACCTGAAACACGACG CGTTTGAAACGTGGCAGATTTTCGAAACAAGTTCGAAACAAGTTCGAAAC AAGGCCCGGCCAATTGCCATGTGCTCGTCGACGTGTCTTGTTGTTGTCAT GTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGCTGTTGTT GTCTTCACATTAAAACCGTCTCTCTAAAAAAAGGTGCACATAAAAATAAA ATGGACTCGAAGGGTCAGCAGAGCGATAAAATCAAAACGAAATCAAAACA ACTAGTCTGGAGCCTTCCGCTCCCCTCTGCACGCTATGCGAGGTAAATTA AAAACAAAATAAAACTGGAGATATCAACGTCTGCAAGGCCAAAAAGTTAA AGCTGACCAAACACACGTGCGCAATTTTTCAACTTTTCCCGCCGTATTTT TCGTTCTGCGCATGGGTGTCATTCACTGGTGGCAGAGGGATACCTGGTGA CGGGGCTCATGGACGGGCGGGTGGTGGCGTGGGAGGCGAAGCGGGCGGAG AGAGCCCCTGCCGAAATTCTTTCGATCGATGCCCACAAGGGAGCCGTTAC GGCGCTCAGCTTCCCCAAGCAGGTGGGAAAAGGGAGGGTTTGTTCAGAGT GTCTACAGCAGGCAGTCCCCTGTTGAACCGGCTTTTTTTCGGGGGTTTGG GCGTATGTATGTATGTAAAGTATGTTTTAGTTTTTCCTGGAGACGATTTG CGCTGTATAGACACATACCCCAAGAAAAGGCATTTTGTTAGCCCACCACG AGACGAGAACGGGAGGAAGGCATCGACATCACCGACGGCGGAACGTCATC CTTCTGACTTTAAGTGTGTTGTTCCCGTATGTCGCGAAAAAAGCGTCACC GGCGATTTCGGGGAAAAGCATGATCGCTTTTTTTTCTTCTTCTTTCAATA AGCACGATCTTGTTTTTCGTTTTCTTGCTTCTTAGCTTGGGAGTTTCGTG CTGGTTTTCCTCTATCCTCTGTCCTCTGGCGATCGGAAACTTTTCACCGA TGATGTCTTGTATGCACGTTGCAGGATGTTCTGCTGACAGGGGGCGGGGA CGGAAGGGTCAAGTACTGGGACCTTACCCAGGGGGGCCCCGCCACCGGAA ACCGTTACGACGTCGGTGGCGAAGCGATCACGCACATCTTCAAGGTGATG ATAGTCTTTGTTTGATTGGTGGCCACGGAAAATACTAATGGTATGGTATG GTATGGTATGTAGCAGTACAGGGTTTTGGGCGCTTCGCGCTCACGCTTCA TTGTAAGCGATTCCCAGGCAATTTTTCAATGCAATTCAATGCATACGACA GCAGAGCTACTGGTGTCAGAACACACGGGAAGCGGAGCTGCCGCGGGGTA TGTTCGAATCTCGGGAAAAGAGGAAAACAGAGCTCTCGTAGACGCGACAA CGGGGAATGAAAAAAAAAGACCAATTGTAGGAGAACGCTGAGGAGGCGCT TCTTTTGGCAGTGATGTGATGTGATGTCATGCCATGTCTCGGTTGTAGAA AGCCTGGTTCAAGAAGGAGCTGTTTTTCTGAGCGTGTTTAGTGTAGCTTG AGTGGGAGGTACAGCTTTTGTACCATCTCATGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTT GCTGTTGCTGTTGCTGTTGCTGTTGTTGTTGTTGTTGGTGGTGGTGGTGG TGGTGGTGGTGGTGGTGTGGGTGCTGCTGCGGCCGCCGTTATCTGTTGCT CAGATGACGCTCTTCGAAATACAAACCAACAGCAGTGTGTATCTACCCTC TACCCTTCCCCCCCCGCACGGAACCTCCTTTCGTTCTTCTCCCCTTTCCT TCGCCCCCCCCTCGAAGGGTCACGCGGCACCCGTGAGCGCCGTGCAGTGC GACGAGCATCGGGTTGTCTCCGCCGCCGACGACGGTACGGTATCGGTGTG GGACGTTCGCACCGGCGAGGAGCTGTTCCAGATCTACGGCCACGCGGGGG GGGTGCACTCCCTCCAGTTCGACAGAGAGCAGCTCGTCACTGACGGTGCG TTTTTTTCTCTTTTTGTAAATATGTATGGTGGTACAGTACAGTACAGTAC AGTACAGTGTGCAGTAGTGCTAGTGTGCCTGCCGCATGTGACGTCGTAGG TGATGAAGGGAGTACTCTTGACGTGAGAACTTGAGATCGTTCAAAAATGC CACGGACGGTGCCCCCTCCCCTGGACAGCTTCCCACGTCTCGGTTGCCCC GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAGA GAGAGACAGGCAGACAGACACACACACAGAGAGAGAGAGCGTTGGCCGTC TGTGAGACAGCACTTTCATCTGTGGTTCGCTCTTTTGGTACTAACCGTCG GCGGTCCACGGGCTGCTGTTTTGTAGACACACAGACCGAACTCTCTCTCA TGCCGCCCCCGCCTAAAATTCTAAGCCCCCCCTCATCAACCGGGGCGATC CTCGAAACAGGTACGGGGGAGAGCCTGTACCTTCACGACTTCACGGGGCG GAGAGGGGCTCCAGCCGTGGGTGGTGGCGGCGACGGGGCGGAGAGCTAG
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Coding sequence (CDS) from alignment at C-linearis_contig86:508786..514234-

>mRNA_C-linearis_contig86.16234.1 ID=mRNA_C-linearis_contig86.16234.1|Name=mRNA_C-linearis_contig86.16234.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at C-linearis_contig86:508786..514234- (Chordaria linearis ClinC8C monoicous)
ATGTCGGATGACGAGTTGAGCGGGCTGTACAGCCGCATCTCGGTGATGCG
AGAGCGGGAGGTGGAGATGTCGGATGACGAGTTGAGCGGGCTGTACAGCC
GCATCTCGGTGATGCGAGAGCGGGAGGTGGAGATCGATCGGGTGTGCGCG
TACAACTGGCGGAAGGGCACCTGCTCGCACGACCTCCTCTTCCAGGCGGC
CGACCCGATCCAGTACTTAAGATCGATCGGGTGTGCGCGTACAACTGGCG
GAAGGGCACCTGCTCGCACGACCTCCTCTTCCAGGCGGCCGACCCGATCC
AGTACTTAAGGTGGGTGGAGGACCAGTTGGCGTTTGGCACGGACAACGGA
GGGACGTGGATCATCAACCGGCAAACGGGGTTCGTGATAAACGTCTTCGA
GGGCCACTCCGGCGGCGTGACAGGTGGGTGGAGGACCAGTTGGCGTTTGG
CACGGACAACGGAGGGACGTGGATCATCAACCGGCAAACGGGGTTCGTGA
TAAACGTCTTCGAGGGCCACTCCGGCGGCGTGACAGCCTTGTACTTCGAC
GGGGAACTGCTGGTGACCGGAGGTTACGACAAGACGGTGCGCGTGCAGTG
GAACAGTCGAGATAGCCTTGAGAAGCCTTGTACTTCGACGGGGAACTGCT
GGTGACCGGAGGTTACGACAAGACGGTGCGCGTGCAGTGGAACAGTCGAG
ATAGCCTTGAGAAGGAACAGCTCGGCGAGGTGCTCCACGTGCTCGAGGGC
CACAAGGATCGGGTCACGGGGGTCGCCCGGCTGGACGGGGGCAGGCTGGC
GTCTTGCTCAGTGGACGGAACCCTGAGGGTTTGGGACCTTGAGACGGGCG
AGGCGCTGCACGACGTCGTGCTGCCCTCGCCGGCGTTTTGCCTCGGGGCC
GCGGGAACAGCTCGGCGAGGTGCTCCACGTGCTCGAGGGCCACAAGGATC
GGGTCACGGGGGTCGCCCGGCTGGACGGGGGCAGGCTGGCGTCTTGCTCA
GTGGACGGAACCCTGAGGGTTTGGGACCTTGAGACGGGCGAGGCGCTGCA
CGACGTCGTGCTGCCCTCGCCGGCGTTTTGCCTCGGGGCCGCGGAGGGAT
ACCTGGTGACGGGGCTCATGGACGGGCGGGTGGTGGCGTGGGAGGCGAAG
CGGGCGGAGAGAGCCCCTGCCGAAATTCTTTCGATCGATGCCCACAAGGG
AGCCGTTACGGCGCTCAGCTTCCCCAAGCAGAGGGATACCTGGTGACGGG
GCTCATGGACGGGCGGGTGGTGGCGTGGGAGGCGAAGCGGGCGGAGAGAG
CCCCTGCCGAAATTCTTTCGATCGATGCCCACAAGGGAGCCGTTACGGCG
CTCAGCTTCCCCAAGCAGGATGTTCTGCTGACAGGGGGCGGGGACGGAAG
GGTCAAGTACTGGGACCTTACCCAGGGGGGCCCCGCCACCGGAAACCGTT
ACGACGTCGGTGGCGAAGCGATCACGCACATCTTCAAGGATGTTCTGCTG
ACAGGGGGCGGGGACGGAAGGGTCAAGTACTGGGACCTTACCCAGGGGGG
CCCCGCCACCGGAAACCGTTACGACGTCGGTGGCGAAGCGATCACGCACA
TCTTCAAGGGTCACGCGGCACCCGTGAGCGCCGTGCAGTGCGACGAGCAT
CGGGTTGTCTCCGCCGCCGACGACGGTACGGTATCGGTGTGGGACGTTCG
CACCGGCGAGGAGCTGTTCCAGATCTACGGCCACGCGGGGGGGGTGCACT
CCCTCCAGTTCGACAGAGAGCAGCTCGTCACTGACGGGTCACGCGGCACC
CGTGAGCGCCGTGCAGTGCGACGAGCATCGGGTTGTCTCCGCCGCCGACG
ACGGTACGGTATCGGTGTGGGACGTTCGCACCGGCGAGGAGCTGTTCCAG
ATCTACGGCCACGCGGGGGGGGTGCACTCCCTCCAGTTCGACAGAGAGCA
GCTCGTCACTGACGGTACGGGGGAGAGCCTGTACCTTCACGACTTCACGG
GGCGGAGAGGGGCTCCAGCCGTGGGTGGTGGCGGCGACGGGGCGGAGAGC
TAGGTACGGGGGAGAGCCTGTACCTTCACGACTTCACGGGGCGGAGAGGG
GCTCCAGCCGTGGGTGGTGGCGGCGACGGGGCGGAGAGCTAG
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