mRNA_C-linearis_contig86.16228.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A6H5KL00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL00_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.540e-62 Identity = 99/164 (60.37%), Postives = 125/164 (76.22%), Query Frame = 3
Query: 252 FVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFGS-GLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLFGDYAWNRTSEP 740
FV QLC FHNDK+GT+LTPE FNSYYFHE WGG+R AD KM EFF+S +FL GIP + GAA VLRKH+ + +++TSRQD LQ HT++W+D HYPG+FA L+FGNHF + G ++KPDLCR++GA +IIDDN Y TECA+AGI + LF + +SEP
Sbjct: 2 FVLQLCTFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVEFFKSPYFL--DGIPPLAGAAEVLRKHSRSLNFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTTYATECASAGIRSLLFAPHM--PSSEP 161
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: D7FZT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT5_ECTSI) HSP 1 Score: 193 bits (490), Expect = 3.120e-54 Identity = 88/147 (59.86%), Postives = 115/147 (78.23%), Query Frame = 3
Query: 375 MHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFGS-GLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLFGDYAWNRTSEPLPANVTRTVTWAEVDAELEALLES 812
M EFF++ +FL GIP + GAA VLRKH+ +++TSRQD LQ HT++W+D HYPG+FA L+FGNHF + G ++KPDLCR++GA +IIDDN +Y TECA+AGI LFGDYAWNRT PLPANV R TWAEVDAEL++++++
Sbjct: 1 MIEFFKTPYFL--DGIPPLAGAAEVLRKHSRTLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRTLLFGDYAWNRTDGPLPANVLRVPTWAEVDAELQSIVDA 145
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A7S2WUE6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUE6_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.670e-52 Identity = 97/204 (47.55%), Postives = 133/204 (65.20%), Query Frame = 3
Query: 210 KKPI-AIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWG---GSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLFGDYAWNRTSEPLPANVTRTVTWAEVDAELEALL 806
KKP+ A+DLDEV ++P FHN +YGTALT + F+SY F E RE + +++EF +S++F +P GA L + A FELHI+TSRQ ++ TR++V+ H+PGLF L FGNHFG SG + KPD+CR +GAV +IDD+ Y +CAAAG+PA++FG Y WN T++ LPA V R W +V +EALL
Sbjct: 37 KKPVLAVDLDEVCAGYLPAFIEFHNARYGTALTLQHFHSYLFWEVQECRMADREESIHRVYEFHQSDYFARIRPLP---GAREALEQLAERFELHIVTSRQTDIEPATRRFVEEHFPGLFTDLHFGNHFGKSGAKVAKPDMCRRIGAVALIDDSLHYAHQCAAAGLPAFIFGTYGWNATTKELPAMVKRVAGWTQV---VEALL 234
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A6J1JK81_CUCMA (uncharacterized protein LOC111485341 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JK81_CUCMA) HSP 1 Score: 164 bits (415), Expect = 3.100e-43 Identity = 84/206 (40.78%), Postives = 128/206 (62.14%), Query Frame = 3
Query: 210 KKPIAIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLF---GDYAWNRTS-EPLPANVTRTVTWAEVDAELEALLES 812
K +A+D+DEV+G+FV L F D+Y + + +++ Y F W SR+ A+ ++HEFF++ +F GI + GA ++L K + L ++TSRQ+ ++EHT KW+D HYPGLF + FGNHF G ++K ++C+ +GA ++IDDN RY ECA AGI LF Y W +T E LPA VT+ W +V+ +L + + S
Sbjct: 113 KLVVAVDIDEVLGNFVSALNKFVADQYSSNHSVSEYHVYEFFRIWNCSRDEANIRVHEFFKTPYFQ--SGIWPIPGAQSMLLKLSRFCHLSVVTSRQNAIKEHTLKWIDRHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECAEAGIRVLLFDYENSYPWCKTGYEDLPALVTKVHNWEDVEQQLTSWVRS 316
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A7S0XCX5_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCX5_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.300e-42 Identity = 77/179 (43.02%), Postives = 118/179 (65.92%), Query Frame = 3
Query: 207 AKKPI-AIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLFGDYAWNRTSE 737
+ KPI AID+DEV+ F+P+L FHN+ YGT+LT E FN Y FH+ WGGS E K+ FF+S + + V G+ L+ +F LHI+TSRQ ++++ TR+W+ +YP +F + FGNH+ +G+ ++K D+C+ + A+L++DD+ Y CA++GIP LFG Y WNR ++
Sbjct: 12 SNKPIIAIDIDEVLAHFIPKLADFHNENYGTSLTVEHFNCYEFHKVWGGSLEETSSKVMSFFDSPYIH---ELSTVSGSYDALKLLKQDFSLHIVTSRQHIVEDLTRQWIYKNYPDIFDEIHFGNHYTKNGISRSKSDICKDINALLLVDDSLIYAKNCASSGIPVILFGHYPWNRPND 187
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: R1BM60_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BM60_EMIHU) HSP 1 Score: 159 bits (402), Expect = 3.190e-42 Identity = 81/185 (43.78%), Postives = 114/185 (61.62%), Query Frame = 3
Query: 252 FVPQLCLFHNDKYGTALTPEDFNSYYFHEAWG---GSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLFGDYAWNRTSEPLPANVTRTVTWAEVDAEL 794
++P C F N +GT++ DF+SY F E G SRE A ++++EF S+FF I + GAA LR A FELH++TSRQ ++ TR ++ H+ GLF + FGNHFG G + +KP++C+ +GAV ++DD+ Y +CAAAGIP LFG Y WN T E L ++ R W +V AEL
Sbjct: 56 YLPAFCKFSNAVHGTSVEAADFHSYMFWEVAGCRLASREAALDRVYEFHASDFFA---RIEPLPGAAEALRLLRAKFELHVVTSRQSDIEPQTRAFLARHFEGLFTAAHFGNHFGREGAKTSKPEMCKRIGAVALVDDSLTYARQCAAAGIPTLLFGAYPWNATDEALDLSIRRVARWQDVLAEL 237
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A4D8Z030_SALSN (Uncharacterized protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8Z030_SALSN) HSP 1 Score: 162 bits (410), Expect = 4.350e-42 Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 3
Query: 219 IAIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLF---GDYAWNRTSEPLPAN--VTRTVTWAEVDAELEALLES 812
IA+D+DEV+G+FV L F D+Y + +++ Y F + W SR AD ++HEFF++ +F GI + GA L K + + L I+TSRQ+ +++HT +W++ HYPGLF + FGNHF G + K D+C+ +GA ++IDDN RY ECAA GI LF Y W +T + + VT+ W EV+ +L +LL S
Sbjct: 156 IAVDVDEVLGNFVSALNRFMADRYSRNHSVSEYHVYEFFKIWNCSRGEADHRVHEFFKTPYFK--KGINPIPGAREALEKLSEIYNLSIVTSRQNAIKDHTIEWIEKHYPGLFREIHFGNHFALDGKSRPKSDICKSLGAKVLIDDNPRYAVECAAVGIKVLLFDYENSYPWCKTEQAAHQHPLVTKVHNWEEVEQQLSSLLVS 357
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A8J4EW32_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EW32_9CHLO) HSP 1 Score: 160 bits (406), Expect = 4.360e-42 Identity = 90/203 (44.33%), Postives = 126/203 (62.07%), Query Frame = 3
Query: 219 IAIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAA-AVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLF---GDYAWNRTSEPLPAN--VTRTV-TWAEVDAELEAL 803
IA+D+DEV+G FV L F D+YG D+ Y F + WG S+ R+++ +HEFFES++F GIPV+ GA A+ R A++EL ++TSRQ V+Q+ T +W+D HY GLF + FGNHF G +TK D+CR +GA ++IDDN Y ECAAAGI L+ G Y W++ N + R V W EV+ +L +L
Sbjct: 92 IAVDVDEVLGRFVYALNKFCKDQYGMEYGVGDYWIYEFAKIWGCSQARSNQIVHEFFESDYFR--EGIPVIPGALEALTRLSEADYELVVVTSRQHVIQDETLEWLDRHYGGLFEEVYFGNHFALEGKSRTKSDICRTIGARVLIDDNPSYALECAAAGIHVLLYDWDGAYPWSKLPSSGAHNPELIRVVRNWKEVETQLASL 292
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: UPI001CC37F28 (uncharacterized protein LOC122668934 n=3 Tax=Proteaceae TaxID=4328 RepID=UPI001CC37F28) HSP 1 Score: 162 bits (409), Expect = 4.560e-42 Identity = 81/197 (41.12%), Postives = 123/197 (62.44%), Query Frame = 3
Query: 219 IAIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLF---GDYAWNRT-SEPLPANVTRTVTWAEVDAEL 794
+A+D+DEV+GSF+ L F D+Y + +++ Y F + W SR+ AD ++HEFF++ +F GI + GA +L K ++ +L ++TSRQ+V+++HT +W++ HYPGLF + FGNHF G + K D+CR +GA ++IDDN RY ECA GI LF Y W +T S+ L VT+ W EV+ +L
Sbjct: 145 VAVDVDEVLGSFISALNKFIADRYSLNCSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTSYFK--TGIHPIPGAQRILHKLSSFCDLSVVTSRQNVIKDHTIEWIEKHYPGLFREIHFGNHFALDGKSRPKSDICRSLGAQVLIDDNPRYAVECAEVGIRVLLFDYQNSYPWCKTGSDNLHPLVTKVHDWEEVEQQL 339
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Match: A0A6J1HVF4_CUCMA (uncharacterized protein LOC111467200 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HVF4_CUCMA) HSP 1 Score: 161 bits (407), Expect = 6.160e-42 Identity = 81/206 (39.32%), Postives = 129/206 (62.62%), Query Frame = 3
Query: 210 KKPIAIDLDEVIGSFVPQLCLFHNDKYGTALTPEDFNSYYFHEAWGGSRERADEKMHEFFESEFFLGGGGIPVVEGAAAVLRKHAANFELHIITSRQDVLQEHTRKWVDLHYPGLFASLQFGNHFG-SGLQKTKPDLCRLVGAVLIIDDNGRYTTECAAAGIPAYLF---GDYAWNRT-SEPLPANVTRTVTWAEVDAELEALLES 812
K +A+D+DEV+G+FV L F D+Y + + +++ Y F W SR+ A+ ++HEFF++ +F GI + GA + L K + L ++TSRQ+ ++EHT +W++ H+PGLF + FGNHF G+ ++K ++C+ +GA ++IDDN RY ECA AGI LF Y W +T +E LP VT+ W +V+ +L +L+ S
Sbjct: 126 KLVVAVDVDEVLGNFVSALNKFVADRYSSNHSVSEYHVYEFFRIWKCSRDEANHRVHEFFKTPYFK--VGIWPIPGAQSTLLKLSRFCHLSVVTSRQNAIKEHTLEWIEKHFPGLFQEIHFGNHFALDGVSRSKEEICKSLGATVLIDDNPRYAIECAEAGIRVLLFDYENSYPWCKTETEDLPPLVTKVYNWEDVEKQLTSLVLS 329 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16228.1 >prot_C-linearis_contig86.16228.1 ID=prot_C-linearis_contig86.16228.1|Name=mRNA_C-linearis_contig86.16228.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp MPQEEDRAPPPPPPPAAGAKKPIAIDLDEVIGSFVPQLCLFHNDKYGTALback to top mRNA from alignment at C-linearis_contig86:432568..435519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16228.1 ID=mRNA_C-linearis_contig86.16228.1|Name=mRNA_C-linearis_contig86.16228.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2952bp|location=Sequence derived from alignment at C-linearis_contig86:432568..435519- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:432568..435519- >mRNA_C-linearis_contig86.16228.1 ID=mRNA_C-linearis_contig86.16228.1|Name=mRNA_C-linearis_contig86.16228.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig86:432568..435519- (Chordaria linearis ClinC8C monoicous)back to top |