mRNA_C-linearis_contig86.16227.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16227.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 7.100e-158 Identity = 717/1515 (47.33%), Postives = 750/1515 (49.50%), Query Frame = 2
Query: 182 RSRGQANGGGHSKGNSDVAKYRDACPASRSDSELLEMVKKMGGDEAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXG---YGNXXXXXXXXRGMDDRRGGRGGLSEKMRGIRPDGDRGSYXXXXXXXXXXXXXXXXXXXRSAPPSGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWNGNRSSSIPPQTANSSVPASGGWGT--AAAKPPIAGGAWTGDGPTTAGEAADTAAEPSPAIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXED-----------------ATAWAQSNLPATSAWSRGAATIINPKXXXXXXXXXXXXXXXXATPAQP--------AAPXXXXXXXXXXXXXXXXXPQTPRPQGSMXXXXXXXXXX--SPAVGSPAVAV--------------------------------------SSPSLVARPVAASATAP-----VQPVQTASDTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPENQAQQTSASVGTSAANGWGSSSASTMGGWGTKDTATSPVESQASGAKPPGFSSTVTVTASPSVPVGAGPPPGLPPLGNVKQQVHELEAEMDSLNKPHAQFSQQVSKSQSKLPAAQQPQVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSHQHGXXXXXXXXXXXXXXXXXXXXXXQHQQHQQXXXXSQQPHGQPHQRPTRQQGGRGGYSSKPQYSSSTSLPQQGGNNFYGGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSHGSPGTTATASKPLYGGQQAGSSSGAAXXXXXXXXXXXXXXXXXXXXXXXPQQARSG*GFFVGGGRTGVFSFVVGREVKEYRCSVRWLLASGLCGFDFFSEFFGFSLAAGWGVPLVLLLSLVFIMGEESWRAAEDRAAVAYRYDTRLFSARDVHILRSVCI*YSVVSFKYLFFFLSVVHSIQAPPPQQQGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSANQYQGQGGGGQRFPNMPRGYPATEYGSQG-MGMGYGQMDYSASSQYGVPPNGN--------EQYGDFGQDQFGMPQQMPGQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSTATVSGSXXXXXXVGGSVSDKLSSAAPLSSXXXXXXXXXXXXNSHYGXXXXXXXXXXXXXXXXXXXHNSQGSRQAQGMYXXXXXXXXXXVPQQADSQAAHGWQGQGSGYPGHHTPSAGGWXXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGTTGNG-DSWGNGR 4471
RS+ ANGGG KGN+DVAKYRDACPASRSDSE++E+VKKMGGD+AKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXX Y N RGMDDRRGGRGG+++KMRG+R DGDRG Y XXXXXXXXXX SAPP+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX A+AK P AG AWTGDGP EA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX A AWAQSNLPATSAWSRGAATIINPK XXX XXXXX A P PQTPRPQGSM SPA+GS V ++PS V V ATAP +Q Q +AV+ AA+GASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPE+Q+QQTS SVGTSA NGWG++S S MG WGTKDTATSPVE+ G KPPGFSS TVTASPSVPVGAGPPPGLPPLGNVKQ VHELEAEMDSLNKPH+QFSQ VSK+QSKLPAAQQPQVQ XXXXXXXXX RP RQQGGRGGY+SKPQYS+S SLPQQ + QGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSA+QYQ QGGGGQRFPNMPRGYPATEYGSQG MGMGYGQMDYSASSQYGVPPNGN EQYGDFGQDQFGMPQQM GQGGXXXXXXXXXXXXXXXXXXXXXXX + S S XXXXXXXXXXX NSHY XXXXXXXXX NSQGSRQAQGM XXXXXXXX VPQQ DSQ HGWQGQGS YPGHHT +AG XXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYG+TGNG DSWGNGR
Sbjct: 3 RSQRHANGGG--KGNADVAKYRDACPASRSDSEIVELVKKMGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANG-------RGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXX-------SAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASAKAPAAGSAWTGDGPAAVSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPKPVPVXXXVAXXXXXXXXXXXXXXXXXXAAHPTLPVVASPGGEAVAATPPQTPRPQGSMPSVAETAAAAAASPAIGSXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPSPVTAAVVTPATAPGSQLHLQKAQAQEASAVSKPT------------------------------------------AATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMG-WGTKDTATSPVETP--GTKPPGFSS--TVTASPSVPVGAGPPPGLPPLGNVKQ-VHELEAEMDSLNKPHSQFSQ-VSKAQSKLPAAQQPQVQXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------RPARQQGGRGGYNSKPQYSNSGSLPQQX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------QGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQ-QGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQGGXXXXXXXXXXXXXXXXXXXXXXXGVLAEASLTRFPRAR---------------SFSAXXXXXXXXXXXXXXXXXXXXXVNSHYXXXXXXXXXX-----------NSQGSRQAQGMXXXXXXXXX--VPQQGDSQGGHGWQGQGSAYPGHHTSNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGSTGNGGDSWGNGR 1081 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16227.1 >prot_C-linearis_contig86.16227.1 ID=prot_C-linearis_contig86.16227.1|Name=mRNA_C-linearis_contig86.16227.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=971bp MSHRSRGQANGGGHSKGNSDVAKYRDACPASRSDSELLEMVKKMGGDEAKback to top mRNA from alignment at C-linearis_contig86:414699..429008+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16227.1 ID=mRNA_C-linearis_contig86.16227.1|Name=mRNA_C-linearis_contig86.16227.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14310bp|location=Sequence derived from alignment at C-linearis_contig86:414699..429008+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:414699..429008+ >mRNA_C-linearis_contig86.16227.1 ID=mRNA_C-linearis_contig86.16227.1|Name=mRNA_C-linearis_contig86.16227.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5826bp|location=Sequence derived from alignment at C-linearis_contig86:414699..429008+ (Chordaria linearis ClinC8C monoicous)back to top |