mRNA_C-linearis_contig86.16215.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 9.620e-132 Identity = 212/236 (89.83%), Postives = 222/236 (94.07%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 921
MRLTAD+I+HARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKL+NFPRYKRLSSLLLCNNH+SKISEDLGT+LPNLSC TLAELKGL TCTKL MLSLLHNEV++KQYYRLYMINL+PSLKQLDFQKVTVKERESA RLA SQAG+AM+QDVAQQAEKAKTFTPGAPA EEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 236
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 224 bits (572), Expect = 9.620e-62 Identity = 130/235 (55.32%), Postives = 169/235 (71.91%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 915
MRLTADVI+ A A+INPC ERELDLRGYKIP+IEN+G TQD FD +DFSDNEIKKLENFPR +RL++LL NNHISKI+E + +PNLS XXXXX LAEL L KL +LSLL N V+ +Q+YRLY+I+ P+LK LDF+KV +ER+ AARL S+AG+ M DV ++ KTF G E+K LT++ + + + I ATT EE++ L ++++AGI+P+ K
Sbjct: 1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 222 bits (565), Expect = 6.380e-60 Identity = 127/230 (55.22%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 903
MRLTADVI+ ARAS+N ERELDLRG+KIP+IEN+GVTQDQFD +DFSDNEI+KL+NFPR RL++LLL NN I++I +D+G LPNLSC L+EL L C +L MLSLL N V Q+YRLY+I+ +PSLK LDF KV +ER A RL S AG+AM +D+A QA KTF PG A LT R I +A T EEI+ L + ++AGI P+
Sbjct: 1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.670e-59 Identity = 131/232 (56.47%), Postives = 167/232 (71.98%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGA--PAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 903
+RLTADV+ + A INPC +RELD+RG K+P IEN+GVT+DQ+D +DFSDNEIKKLENFPR+ RLS+LLL NNHI++IS LG L +L XXXXXXXXX L+E+ L CTKL LSL++N V +Q+YRLY+I+ +PS+K LDF KV +ER AARL S AGK M QDV +A TFTPG P+ T+E A IA ATT EE++ + ++++AGIIPS
Sbjct: 2 VRLTADVLQNCFARINPCLDRELDIRGLKVPAIENIGVTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKVKPQERADAARLFKSAAGKLMQQDVDAEAS---TFTPGEDMPSNPMANFTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPS 230
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA) HSP 1 Score: 213 bits (543), Expect = 3.040e-59 Identity = 129/240 (53.75%), Postives = 168/240 (70.00%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPG----------APAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 903
+RLTADV HA +N C ERELDLRG KIP IEN+GVTQDQFD +DF+DNEIK+++NFP +KRLS+LLL NNH++++S L LPNL C XXXXXXXX L+E+ L CTKL MLS ++N +I +Q+YRLY+I +P LK LDF KV ERE AA+L S AG+ M QDV ++ KTFTPG A EQK D+ RA+ IA A+T EE++ + ++++AG+IP+
Sbjct: 2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMANLTAEQK--DQVRAV----IAAASTPEEVDRIERQLKAGVIPT 232
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.590e-58 Identity = 117/136 (86.03%), Postives = 121/136 (88.97%), Query Frame = 1
Query: 514 TLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 921
TLAELKGL TCTKL MLSLLHNEV++KQYYRLYMINLVPSLKQLDFQKVTVK AG+AM+QDVAQQAEKAKTFTPGAPA EEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG
Sbjct: 5 TLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 128
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM) HSP 1 Score: 194 bits (493), Expect = 1.090e-52 Identity = 113/243 (46.50%), Postives = 158/243 (65.02%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIPSANYKQG 921
++LT D+I + INP +RELDLRGYKIP+IENLG T DQFD +DFSDNEI++L+NFP RL +L NN I +I +++ SLPNL+ LA+L+ LA L LSL+ N VISK YRLY+I+ +P+L+ LDF+KV +KERE A S+ GK +++++ ++A AKTFTPGAP +E K ++ + D+I A+ATT+EEIE L++ ++ G IP Y G
Sbjct: 2 VKLTPDLIEGSAQYINPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIPGT-YSNG 241
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.690e-52 Identity = 112/234 (47.86%), Postives = 152/234 (64.96%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAE----KAKTFTPGAPAVEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 903
MRLT+DV+++A A +NPC ERELDLRG KIP IEN+GVTQD +D +DF+DNEIKKLENFP KRLS LLL NNH+ I+ ++ +P+L L+E+ LA C L LSLL N VI +Q+YR Y+I+ +P LK LDF K+ KER+ A RL S AGK M +DV + E +A+T T +L + RA IA A+T +EI+ + ++++AGI+P+
Sbjct: 1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMA-----QLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPT 229
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR) HSP 1 Score: 193 bits (490), Expect = 1.800e-52 Identity = 110/239 (46.03%), Postives = 154/239 (64.44%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPAVEEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 921
++LTA++I A NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KL+ FP KRL +LL+ NN I ++ E+L SLP L+ L +L LAT L +LSLL N V +K++YRLYMIN +P ++ LDFQKV KER+ A ++ + G + +D+A+ + KTFTPG PA E+K T +A + IA A+++ E+E L +QAG IP + ++G
Sbjct: 2 VKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Match: H2Z672_CIOSA (LRRcap domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z672_CIOSA) HSP 1 Score: 192 bits (488), Expect = 5.200e-52 Identity = 112/237 (47.26%), Postives = 153/237 (64.56%), Query Frame = 1
Query: 214 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLENFPRYKRLSSLLLCNNHISKISEDLGTSLPNLSCXXXXXXXXXTLAELKGLATCTKLAMLSLLHNEVISKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLAGSQAGKAMMQDVAQQAEKAKTFTPGAPA-------VEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 903
++LT ++I A +NP +REL LRGYKIP+IENLG T DQFD +DFSDN+IKKL+ FP R+ SL NN I +I+E+L TSLPN+ L E+ L+ C KL LSLL N V+ +Q+YRLY+I +P+L+ LDFQ++ +KER+ + +L GS+ GK Q V++ +K KTFTPGAP +E+Q D R D I KAT++EE+E L +QAG IP+
Sbjct: 2 VKLTQELIEQAIQYVNPVRQRELLLRGYKIPVIENLGATLDQFDTIDFSDNDIKKLDGFPLLIRIKSLYFNNNRICRINEELHTSLPNIEELYMTNCEIRELTEIDNLSECKKLQFLSLLRNPVVHRQHYRLYVIYKLPNLRVLDFQRIKMKERQESKKLFGSKQGK---QIVSELNKKRKTFTPGAPIATNGVSPIEQQSKAD--REAIKDAILKATSLEEVEKLKLMLQAGQIPN 233 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16215.1 >prot_C-linearis_contig86.16215.1 ID=prot_C-linearis_contig86.16215.1|Name=mRNA_C-linearis_contig86.16215.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=457bp MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDback to top mRNA from alignment at C-linearis_contig86:236003..242715+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16215.1 ID=mRNA_C-linearis_contig86.16215.1|Name=mRNA_C-linearis_contig86.16215.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6713bp|location=Sequence derived from alignment at C-linearis_contig86:236003..242715+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:236003..242715+ >mRNA_C-linearis_contig86.16215.1 ID=mRNA_C-linearis_contig86.16215.1|Name=mRNA_C-linearis_contig86.16215.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2742bp|location=Sequence derived from alignment at C-linearis_contig86:236003..242715+ (Chordaria linearis ClinC8C monoicous)back to top |