mRNA_C-linearis_contig86.16185.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D8LB67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB67_ECTSI) HSP 1 Score: 274 bits (700), Expect = 1.100e-89 Identity = 138/192 (71.88%), Postives = 149/192 (77.60%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRG-LPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC+LVISPDDVWLTILAQ CAYVNKNAEGLR++IV+HE + V H P + G + + PGFSTTTEKDEVCAAATAMASLQAYFE+TM CGIPSVTL GTVGDWKLLREKIERLLEFEVDGNP G VM+ WVGYLRKVCDGFVESAEHPGSPETLEFWD+V
Sbjct: 1 MTAYNTHCNLVISPDDVWLTILAQSCAYVNKNAEGLRDRIVEHEGKKELRVSSDGTLHTADYPRMIRDLLGLIRQNIKSPEFADWFRPGFSTTTEKDEVCAAATAMASLQAYFEYTMMYRCGIPSVTLMGTVGDWKLLREKIERLLEFEVDGNPQGKVMQTWVGYLRKVCDGFVESAEHPGSPETLEFWDRV 192
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: A0A6H5KQX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX2_9PHAE) HSP 1 Score: 267 bits (682), Expect = 1.040e-86 Identity = 136/193 (70.47%), Postives = 152/193 (78.76%), Query Frame = 1
Query: 4 TAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVP---PGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
TAY+THC+LVISPDDVWLTILAQFCAYVNKNAEGLR++IV HE + A ++ D + R Y + Q ++ L PGFSTTTE+DEVCAAATAMASLQ YFEF M CGIPSVTL GTV DWKLLREK+ERLLEFEVDGNP+G VM+IWVGYLRKVCDGFVESAEHPGSPETLEFWD+V
Sbjct: 19 TAYDTHCNLVISPDDVWLTILAQFCAYVNKNAEGLRDRIVQHEGKKAL-IVVSDGTLRTTADYPRMIRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQNYFEFRMRRGCGIPSVTLRGTVRDWKLLREKVERLLEFEVDGNPEGEVMQIWVGYLRKVCDGFVESAEHPGSPETLEFWDRV 210
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D8LQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ89_ECTSI) HSP 1 Score: 262 bits (669), Expect = 4.650e-86 Identity = 134/194 (69.07%), Postives = 152/194 (78.35%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHR--GLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGN-VMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC+LVISPDDVWL ILAQFCAYVNKNAEGLR++IV HE + + V+ D + R P + G + + PGFSTTTE+DEVCAAATAMASLQ YFE++ CGIPSVTL GTVGDWKLLREKIERLLEFEVDGNP+ + VM+IWVGYLRKVCDGFV+SAEHPGSPETLEFWD+V
Sbjct: 1 MTAYNTHCNLVISPDDVWLAILAQFCAYVNKNAEGLRDRIVQHEGK-KELVVASDGTLRTADYPRMIRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQGYFEYSFMCGCGIPSVTLRGTVGDWKLLREKIERLLEFEVDGNPEEDKVMQIWVGYLRKVCDGFVKSAEHPGSPETLEFWDRV 193
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D7FL08_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FL08_ECTSI) HSP 1 Score: 254 bits (650), Expect = 5.950e-81 Identity = 129/194 (66.49%), Postives = 147/194 (75.77%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVP---PGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC L +SPDDVWLTIL+QFCAYVNKNAEGLR+++V+HE G +G+ YA+ Q ++ L PGFSTTTE DEVCAAA AMASLQAYFE+TM + CGIPSVTL GTV DWKLLREKIER+LEFEV GNP+G VME+WVGYLRKVCDGFVESAEHP S T++FWDKV
Sbjct: 104 MTAYNTHCALEVSPDDVWLTILSQFCAYVNKNAEGLRDRVVEHE--GKKGLTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTTTETDEVCAAAAAMASLQAYFEYTMCLACGIPSVTLMGTVEDWKLLREKIERMLEFEVLGNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 295
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D7FL09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL09_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.290e-79 Identity = 125/194 (64.43%), Postives = 144/194 (74.23%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVP---PGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC L +SPDDVWLTIL+QFCAYVNKNAEGLR+++V+HE G +G+ YA+ Q ++ L PGFST+TE DEVCAAATAMASLQAYFE TM + C IPSVTL GTV DW+LLREKIER+LEFEV NP+G VME+WVGYLRKVCDGFVESAEHP S T++FW KV
Sbjct: 1 MTAYNTHCALEVSPDDVWLTILSQFCAYVNKNAEGLRDRVVEHE--GKKGLTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTSTETDEVCAAATAMASLQAYFEHTMCLACSIPSVTLMGTVEDWELLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVDFWAKV 192
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: A0A6H5K056_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K056_9PHAE) HSP 1 Score: 248 bits (633), Expect = 7.200e-79 Identity = 124/191 (64.92%), Postives = 142/191 (74.35%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC LV+SPDDVWLTIL+QFCAYVNKNAEGLR+++V+HE + + L Y Q + A+ + PGFSTTTE DEVCAAATAMASLQ YF + M + CGIPSV L GTV DWKLLREKIER+LEFEV NP+G VME+WVGYLRKVCDGFVESAEHP S T++FWDKV
Sbjct: 89 MTAYNTHCALVVSPDDVWLTILSQFCAYVNKNAEGLRDRVVEHEGK------------KKLTVYGQNIKPPELADWFL--------PGFSTTTETDEVCAAATAMASLQEYFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPNSAATVDFWDKV 259
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: A0A6H5KCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ8_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.440e-78 Identity = 124/191 (64.92%), Postives = 143/191 (74.87%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYNTHC LV+SPDDVWLTIL+QFCAYVNKNAEGLR+++V+HE G + + + YA+ Q ++ L PGFSTTTE DEVCAAATAMASLQ F + M + CGIPSV L GTV DWKLLREKIER+LEFEV NP+G VME+WVGYLRKVCDGFVESAEHP S T++FWDKV
Sbjct: 85 MTAYNTHCALVVSPDDVWLTILSQFCAYVNKNAEGLRDRVVEHE--GKKKLTVYGYGSLETADYARLIKDLLGQIRQNIKSPELFLPGFSTTTETDEVCAAATAMASLQECFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 273
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D7G2F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F1_ECTSI) HSP 1 Score: 238 bits (608), Expect = 5.670e-76 Identity = 120/192 (62.50%), Postives = 140/192 (72.92%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQEGAQGVLCW-DASHRGLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYN H DLV+ PDDVWLTILAQFC YVNKNAE LR++IVDHE + A GV + P+ + + + PGF+TTT+ DEV AAATAMASLQAYF + + CG+PSVTL GTV DWKLLR K+ERLL+FEV NP+G+VME+WVGYLRKVCDGFVESAEHP S ETL+FWDKV
Sbjct: 40 MTAYNRHADLVLRPDDVWLTILAQFCLYVNKNAESLRDRIVDHEGKKALGVEGGGNLFSLDYPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKV 231
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: D7G2F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F2_ECTSI) HSP 1 Score: 237 bits (604), Expect = 2.410e-72 Identity = 120/197 (60.91%), Postives = 139/197 (70.56%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQ------EGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
MTAYN H DLV+ PDDVWLTILAQFC YVNKNAE LR++IVDHE EG + D P+ + + + PGF+TTT+ DEV AAATAMASLQAYF + + CG+PSVTL GTV DWKLLR K+ERLL+FEV NP+G+VME+WVGYLRKVCDGFVESAEHP S ETL+FWDKV
Sbjct: 225 MTAYNRHADLVLRPDDVWLTILAQFCLYVNKNAESLRDRIVDHEGKKVLRVEGGGNLFSLD-----YPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKV 416
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Match: A0A6H5L0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H3_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.760e-65 Identity = 110/197 (55.84%), Postives = 134/197 (68.02%), Query Frame = 1
Query: 1 MTAYNTHCDLVISPDDVWLTILAQFCAYVNKNAEGLRNKIVDHEQ------EGAQGVLCWDASHRGLPSYAQGAAGADQAEHQVARTR*LVPPGFSTTTEKDEVCAAATAMASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDGNVMEIWVGYLRKVCDGFVESAEHPGSPETLEFWDKV 573
M AYN H DLV+ PDD+WLTILA FC YVNKNAE LR++IV+HE EG + + P + G + ++ PGF+TT DEV AAATA+ SLQAYF + + + CG+PSVTL GTV DWKLLR K+ERLL+FEV NP+ +VME+WVGYLR+VCDGFVESAEHP S ETL+ WDKV
Sbjct: 174 MMAYNHHADLVLRPDDMWLTILAHFCLYVNKNAESLRDRIVNHEGKKVLRVEGGGNLFSAET-----PVLIREMLGKIRQNVKMPELADWFKPGFTTTANTDEVAAAATAITSLQAYFSYEIHLECGLPSVTLMGTVQDWKLLRAKVERLLDFEVKDNPEEDVMEVWVGYLREVCDGFVESAEHPDSTETLQVWDKV 365 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig86.16185.1 >prot_C-linearis_contig86.16185.1 ID=prot_C-linearis_contig86.16185.1|Name=mRNA_C-linearis_contig86.16185.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp MASLQAYFEFTMGILCGIPSVTLTGTVGDWKLLREKIERLLEFEVDGNPDback to top mRNA from alignment at C-linearis_contig86:37355..37927+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig86.16185.1 ID=mRNA_C-linearis_contig86.16185.1|Name=mRNA_C-linearis_contig86.16185.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at C-linearis_contig86:37355..37927+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig86:37355..37927+ >mRNA_C-linearis_contig86.16185.1 ID=mRNA_C-linearis_contig86.16185.1|Name=mRNA_C-linearis_contig86.16185.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig86:37355..37927+ (Chordaria linearis ClinC8C monoicous)back to top |