mRNA_C-linearis_contig86.16184.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16184.1
Unique NamemRNA_C-linearis_contig86.16184.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:31354..32096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16184.1prot_C-linearis_contig86.16184.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 31354..32096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.8961337-CDS-C-linearis_contig86:31353..313881622930648.8961337-CDS-C-linearis_contig86:31353..31388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 31354..31388 +
1690881177.9333906-CDS-C-linearis_contig86:31353..313881690881177.9333906-CDS-C-linearis_contig86:31353..31388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 31354..31388 +
1622930648.9171882-CDS-C-linearis_contig86:31657..318261622930648.9171882-CDS-C-linearis_contig86:31657..31826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 31658..31826 +
1690881177.951505-CDS-C-linearis_contig86:31657..318261690881177.951505-CDS-C-linearis_contig86:31657..31826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 31658..31826 +
1622930648.9392846-CDS-C-linearis_contig86:32036..320961622930648.9392846-CDS-C-linearis_contig86:32036..32096Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 32037..32096 +
1690881177.962642-CDS-C-linearis_contig86:32036..320961690881177.962642-CDS-C-linearis_contig86:32036..32096Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 32037..32096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16184.1

>prot_C-linearis_contig86.16184.1 ID=prot_C-linearis_contig86.16184.1|Name=mRNA_C-linearis_contig86.16184.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=88bp
MGVPQGAYMSVRDSLNEVERRTGLFVRVVEEERAVAQRRSDQLEQDMDKL
EEERSRDMKTQLGIYEAKIDGIKGGLASCSFELRELAT
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mRNA from alignment at C-linearis_contig86:31354..32096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16184.1 ID=mRNA_C-linearis_contig86.16184.1|Name=mRNA_C-linearis_contig86.16184.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=743bp|location=Sequence derived from alignment at C-linearis_contig86:31354..32096+ (Chordaria linearis ClinC8C monoicous)
ATGGGTGTGCCGCAAGGTGCTTACATGTCAGTCCGGTAAGTATGAGCTGG
AATGTTTTAAGAGTTGCTTGACGGGATTTGCTGGTTGTATGTAGTACGTG
CATGGTGTTTCACTCTGTTGTAGCCTAGAGATTTTTTGTGTTGAACGCAT
TAAAGCAGCGGTTAATGGATGGAGTGTTCGATCGATGACGAAATAAAACA
AAAAAATACAGGAAGCATAAACACAGCTTGAGCAAGCCCGTGCGCCAACC
TTCCTCGCTTTCCTTCCGTACGATTGAATACCGGAACGGCGTGCCATATT
GTAGCGATAGCTTGAACGAGGTGGAGAGGAGGACAGGCTTGTTCGTGAGA
GTCGTCGAGGAGGAGAGGGCTGTTGCTCAGCGGAGGAGTGATCAACTTGA
ACAAGACATGGACAAACTGGAGGAGGAGAGGTCTCGAGACATGAAGACGC
AGCTCGGCATCTACGAAGCGAAGGTAGGCGCTCTGGGTGTTTGGTTCGCT
TTGCTCCCTCTCTGGTGCCAGTGCTATGGTCTTCCAATACTTGTACGGTT
GTTCGCGCCCTGAGATATTGTTACATGTCAATTTACGCTGTTCTGATCAC
CTCTCCGCCGAACCCGGCGCTACTCCTCTCTTCTAAATGGTGTAACGTTC
CGTCACCTCTGTGTCGTTTTGCTGTTGTTGCAGATTGATGGGATAAAGGG
AGGTCTGGCTTCGTGCTCCTTCGAGCTGCGCGAGCTGGCAACA
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Coding sequence (CDS) from alignment at C-linearis_contig86:31354..32096+

>mRNA_C-linearis_contig86.16184.1 ID=mRNA_C-linearis_contig86.16184.1|Name=mRNA_C-linearis_contig86.16184.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at C-linearis_contig86:31354..32096+ (Chordaria linearis ClinC8C monoicous)
ATGGGTGTGCCGCAAGGTGCTTACATGTCAGTCCGATGGGTGTGCCGCAA
GGTGCTTACATGTCAGTCCGCGATAGCTTGAACGAGGTGGAGAGGAGGAC
AGGCTTGTTCGTGAGAGTCGTCGAGGAGGAGAGGGCTGTTGCTCAGCGGA
GGAGTGATCAACTTGAACAAGACATGGACAAACTGGAGGAGGAGAGGTCT
CGAGACATGAAGACGCAGCTCGGCATCTACGAAGCGAAGCGATAGCTTGA
ACGAGGTGGAGAGGAGGACAGGCTTGTTCGTGAGAGTCGTCGAGGAGGAG
AGGGCTGTTGCTCAGCGGAGGAGTGATCAACTTGAACAAGACATGGACAA
ACTGGAGGAGGAGAGGTCTCGAGACATGAAGACGCAGCTCGGCATCTACG
AAGCGAAGATTGATGGGATAAAGGGAGGTCTGGCTTCGTGCTCCTTCGAG
CTGCGCGAGCTGGCAACAATTGATGGGATAAAGGGAGGTCTGGCTTCGTG
CTCCTTCGAGCTGCGCGAGCTGGCAACA
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