mRNA_C-linearis_contig85.16179.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.030e-53 Identity = 102/200 (51.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query: 16 YVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQ---SRDAKL------QNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
+V T A LGV TLRKWD+ I IR GG R+++I F++ Q S +A+L ++KK R Y RVS +KQ EDL RQ + + S PG + SD GSG+NFKRKGFK+LLR +M G + V+V+Y+DRLCR AF+++++ICDE+ T+L+V NQ++ GS E EL+EDLMA+VHVFSSRLYGKRS R
Sbjct: 3 FVNTKTAIERLGVSNVTLRKWDKLEAIPTIRTPGGQRVYDIETFQKTQALRSEEARLCARRMAKDKKNASRIDIGYARVSFSKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKLLRCIMQGQIDRVLVAYKDRLCRFAFEIIQFICDENNTELVVLNQNENGSAEAELMEDLMAVVHVFSSRLYGKRSTGKR 202
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A846H8F0_9CYAN (IS607 family transposase n=1 Tax=Hassallia byssoidea VB512170 TaxID=1304833 RepID=A0A846H8F0_9CYAN) HSP 1 Score: 160 bits (404), Expect = 3.400e-46 Identity = 82/193 (42.49%), Postives = 120/193 (62.18%), Query Frame = 1
Query: 7 SDEYVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKS 585
SD+YV+ ++A+R LGV+ TLR+W++ I IR GG R ++I+ F R IY RVSS KQ EDL+RQ + LE+ YP ++ ++ G G+N+KRK F LL VM G + +V++Y+DRL R FD W+C + +++V NQ E S E+E++ED++AI+H FS+RLYG R KS
Sbjct: 2 SDKYVSPADAARTLGVNERTLRRWEKEEKITAIRTVGGQRRYDITAFTTKPVRCT------------VIYARVSSPKQREDLQRQCDYLESKYPNSEIIAEIGGGLNYKRKKFLALLERVMQGDIERIVIAYKDRLARFGFDFFAWLCSLNSCEIVVLNQ-VELSPEREMVEDILAILHCFSARLYGLRKYKS 181
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: K9TLX0_9CYAN (Putative site-specific integrase-resolvase n=36 Tax=Oscillatoriales TaxID=1150 RepID=K9TLX0_9CYAN) HSP 1 Score: 157 bits (398), Expect = 2.160e-45 Identity = 83/191 (43.46%), Postives = 115/191 (60.21%), Query Frame = 1
Query: 16 YVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
YV A++ILGVH TLR+WD +IE IR G R +N+ + D KR IY RVSS Q DL RQ+ L YP +V S+ G G+NFKRK LL +V+ G + VVV+++DRL R FDL W+C++++ +LLV N+ S E+E++ED++AI+H FSSRLYG R K++
Sbjct: 4 YVKPKEAAQILGVHERTLRRWDENGSIETIRTPAGQRRYNVESYTAFSGSD---------KRKVVIYARVSSRAQQSDLNRQVAALSNLYPEAEVVSEIGGGLNFKRKKMLALLGQVLSGDVRMVVVAHKDRLARFGFDLFRWLCEQNRCELLVLNETS-LSPEREMVEDILAILHCFSSRLYGLRKYKTQ 184
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A6H1TYQ4_9CYAN (IS607 family transposase n=5 Tax=Oxynema aestuarii AP17 TaxID=2064643 RepID=A0A6H1TYQ4_9CYAN) HSP 1 Score: 157 bits (396), Expect = 3.510e-45 Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 1
Query: 13 EYVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
+YVT A ILGV TLR WD+ I IR+ G+R ++IS D K K R IY RVSS KQ DL RQ + L YP +V + GSG+N+ RK FK +L VM G + +VV ++DRL R F+LL+WIC+ + T+L+V N E S E+E++ED++AIVHVFS RLYG R KS+
Sbjct: 4 KYVTPKEAQAILGVSEKTLRNWDKQGKIRAIRIPSGHRRYDISSI------DGK------KNRARIIYARVSSHKQKADLDRQADYLLCLYPRAEVIKEIGSGLNYNRKKFKAILERVMSGDVEQLVVGHKDRLARFGFELLKWICELNHTELVVCNN-TELSPEREMVEDILAIVHVFSYRLYGLRKYKSQ 182
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: UPI000BBC73EB (IS607 family transposase n=1 Tax=unclassified Calothrix TaxID=2619626 RepID=UPI000BBC73EB) HSP 1 Score: 152 bits (384), Expect = 3.070e-43 Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 1
Query: 16 YVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
YVT A +IL V TLR WD++ I IR +R ++I D+ L K KKRT +YCRVSS KQ +DL RQ + L++ +PG V + GSG+N+ R G + LL +++ G + VV SY+DRL R +++++IC E+ TKL+V N+ + S E+E +ED++AI+HVFSS+LYG R K +
Sbjct: 4 YVTPREAMQILQVSEKTLRDWDKSGKIRAIRTPSNHRRYDI---------DSVLDPKALKKRTTYLYCRVSSHKQRDDLNRQADYLQSLFPGGCVIKEIGSGLNYNRIGLQTLLGQILSGDVEQVVCSYKDRLARFGIEIIDYICRENDTKLVVLNR-IDLSPEREFVEDILAIIHVFSSKLYGLRKYKQK 184
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A6L9ZT93_9CYAN (IS607 family transposase n=1 Tax=Okeania sp. SIO3B5 TaxID=2607811 RepID=A0A6L9ZT93_9CYAN) HSP 1 Score: 152 bits (383), Expect = 5.330e-43 Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 16 YVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
YVT A+RILGV TLR W+ I+ IR GG R ++I+ + + R +Y RVSS KQ EDL RQ E L++ YP ++ + G G+N+KRK +L VM G++ ++VV+Y+DRL R FDLLEW C H +++V N+ E S E+E++ED+++I+H FS+RLYG R S+
Sbjct: 5 YVTPGEAARILGVCDRTLRYWEEQGKIKTIRTAGGQRRYDITTYTTGTTGH----------RVIILYARVSSTKQKEDLERQCEYLKSQYPDGELVKEVGGGLNYKRKKMLAILERVMSGNVQSIVVTYKDRLLRFGFDLLEWFCAHHNVQIVVLNK-VELSPEREMVEDILSILHGFSARLYGLRKYSSQ 184
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A7S6RG97_9CYAN (IS607 family transposase n=4 Tax=Nostocales TaxID=1161 RepID=A0A7S6RG97_9CYAN) HSP 1 Score: 150 bits (380), Expect = 1.800e-42 Identity = 76/191 (39.79%), Postives = 123/191 (64.40%), Query Frame = 1
Query: 13 EYVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKS 585
++VT A++ILGVH ++LR+W+ ++ IR GG R F + + ++ K++ Y RVS+ Q +DL+RQ+E+L T YP ++ S+ GSG+NFKRK F +L ++ G + VVV++ DRL R F+L+ W+C + + +L+V N D++ S E+EL++D+++I+H FSSRLYG R KS
Sbjct: 2 QHVTPKEAAKILGVHVSSLRRWENEGKLKAIRTPGGQRRFILEEVEKIGGIPRKIKT--------ICYGRVSTHSQQDDLQRQLEHLRTRYPEAEIISEVGSGLNFKRKKFLAILERIIDGDIQRVVVAHPDRLVRFGFELVRWLCTKFECELVVLN-DRKLSPEQELVQDMLSIIHCFSSRLYGLRKYKS 183
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A662S372_9ARCH (IS607 family transposase n=1 Tax=Candidatus Korarchaeota archaeon TaxID=2056630 RepID=A0A662S372_9ARCH) HSP 1 Score: 149 bits (376), Expect = 3.900e-42 Identity = 79/188 (42.02%), Postives = 116/188 (61.70%), Query Frame = 1
Query: 25 TSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
TS AS+ LG+HPNTLR+W I +R G+RL+++ F L K+ R IY RVSS +Q +DL QI+ L YP + D GSG+NFKRKGF +LL +V+ G + +VV+++DRLCR FD + I + KL+V ++ + S ++EL++DL++I+HVFS R+YG R S+
Sbjct: 4 TSVASKKLGIHPNTLRRWANEGRINYVRQPQGHRLYDVDSF---------LNQGKKIDRVKFIYARVSSRRQADDLSNQIKYLRERYPTHEFLQDYGSGLNFKRKGFCKLLEQVLSGAVSEIVVTHKDRLCRFGFDFFQKIAEHFDCKLVVLDE-VKLSPQEELIQDLISIIHVFSCRIYGLRKYPSK 181
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A6P0SSH2_9CYAN (IS607 family transposase n=5 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SSH2_9CYAN) HSP 1 Score: 149 bits (377), Expect = 4.040e-42 Identity = 78/194 (40.21%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 7 SDEYVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKSR 588
S YV AS LGV TL +W + I+ I+ GG R ++++ +S + R+ +Y RVSS Q DL +Q++ L++ YP ++ D GSG+NFKRKG + LL V+ G VVV+++DRLCR FDL+ W+C + QTK+LV ++ + S E+E++ED++A++HVFS RLYG R K++
Sbjct: 4 SVNYVPPRVASNRLGVSTKTLERWLESGKIQGIKTPGGQRRYDLNSVVSIRSEKIRTD------RSTILYARVSSRSQKNDLEQQVQFLQSRYPDAEIIKDIGSGLNFKRKGLQALLDRVIGGSCKYVVVAHKDRLCRFGFDLISWLCSKFQTKILVLDE-KNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKNK 190
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Match: A0A2T1E235_9CYAN (IS607 family transposase n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1E235_9CYAN) HSP 1 Score: 149 bits (377), Expect = 4.040e-42 Identity = 85/190 (44.74%), Postives = 115/190 (60.53%), Query Frame = 1
Query: 16 YVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKRDQSRDAKLQNKKEKKRTHAIYCRVSSAKQTEDLRRQIENLETSYPGFQVFSDTGSGINFKRKGFKRLLREVMHGHLGTVVVSYRDRLCRIAFDLLEWICDEHQTKLLVHNQDQEGSDEKELLEDLMAIVHVFSSRLYGKRSNKS 585
YVT A +IL V TLR W+ + I IR R ++I D+ L + R AIY RVSS KQ EDL RQ+ L+ YP +VF D G G+NFKRK LL +VM G + T+VV ++DRL R DL++WIC+++ +LLV ++ E S E+E++ED++AI+HVFS RLYG R KS
Sbjct: 4 YVTPREACKILQVSEKTLRNWELADKISAIRTPTNQRRYDI---------DSVLGTGHD--RVTAIYARVSSHKQREDLDRQVSYLQNLYPQAKVFKDIGGGLNFKRKALLSLLGQVMSGDISTIVVGHQDRLARFGGDLIKWICEQNDCQLLVLSR-SELSPEREMVEDILAIIHVFSCRLYGLRKYKS 181 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig85.16179.1 >prot_C-linearis_contig85.16179.1 ID=prot_C-linearis_contig85.16179.1|Name=mRNA_C-linearis_contig85.16179.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp MQSDEYVTTSNASRILGVHPNTLRKWDRTNTIECIRVDGGNRLFNISKFKback to top mRNA from alignment at C-linearis_contig85:689449..690036+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig85.16179.1 ID=mRNA_C-linearis_contig85.16179.1|Name=mRNA_C-linearis_contig85.16179.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at C-linearis_contig85:689449..690036+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig85:689449..690036+ >mRNA_C-linearis_contig85.16179.1 ID=mRNA_C-linearis_contig85.16179.1|Name=mRNA_C-linearis_contig85.16179.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig85:689449..690036+ (Chordaria linearis ClinC8C monoicous)back to top |