mRNA_C-linearis_contig85.16166.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16166.1
Unique NamemRNA_C-linearis_contig85.16166.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16166.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.570e-55
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 2 
Query:  425 PPARPGLG-KKPSGAGFKITYSMNQLLSMGKEMMESEAGCPPPEGWDTFQYDTIGPLIDENSTRVPSKEEAAALKMKPGSARDLHKDHIAALAAKQGTDPEPSPVLGPRGGGDR 763
            PP R GLG KK SG GFKITYS+NQLLSMGKE+MESEAGCPPPEGWD ++YDTIGPLIDEN+TR+PSKEEAAALKMKPGSARDLH +HIAAL AKQG DP+ SP LGPRGGGDR
Sbjct:    5 PPTRAGLGGKKASGTGFKITYSVNQLLSMGKELMESEAGCPPPEGWDKYEYDTIGPLIDENNTRIPSKEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPSLGPRGGGDR 118
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI1.570e-5583.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:407500..408437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size794
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16166.1prot_C-linearis_contig85.16166.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 407500..408025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.8027682-CDS-C-linearis_contig85:407499..4077071622930646.8027682-CDS-C-linearis_contig85:407499..407707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 407500..407707 -
1690881176.8122246-CDS-C-linearis_contig85:407499..4077071690881176.8122246-CDS-C-linearis_contig85:407499..407707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 407500..407707 -
1622930646.8189192-CDS-C-linearis_contig85:407852..4080251622930646.8189192-CDS-C-linearis_contig85:407852..408025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 407853..408025 -
1690881176.8232052-CDS-C-linearis_contig85:407852..4080251690881176.8232052-CDS-C-linearis_contig85:407852..408025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 407853..408025 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.8336473-UTR-C-linearis_contig85:408025..4084371622930646.8336473-UTR-C-linearis_contig85:408025..408437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 408026..408437 -
1690881176.8406494-UTR-C-linearis_contig85:408025..4084371690881176.8406494-UTR-C-linearis_contig85:408025..408437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 408026..408437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16166.1

>prot_C-linearis_contig85.16166.1 ID=prot_C-linearis_contig85.16166.1|Name=mRNA_C-linearis_contig85.16166.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
MMRRPPARPGLGKKPSGAGFKITYSMNQLLSMGKEMMESEAGCPPPEGWD
TFQYDTIGPLIDENSTRVPSKEEAAALKMKPGSARDLHKDHIAALAAKQG
TDPEPSPVLGPRGGGDRGRGGSDARRE
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mRNA from alignment at C-linearis_contig85:407500..408437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16166.1 ID=mRNA_C-linearis_contig85.16166.1|Name=mRNA_C-linearis_contig85.16166.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=938bp|location=Sequence derived from alignment at C-linearis_contig85:407500..408437- (Chordaria linearis ClinC8C monoicous)
GGCGCGCCAAGTTGCGGCAGGAACAGCCCAGCCTTCTCTTCTTTCTTGAA
GTTAGGGTAGGGAGGGAGGGGCAAGTCTGCGCTGCTCTGCTTTGCTTTCA
ACGGCGTCAGCAGGAAGGAACCCACAACAGGACAAAGGACGAAAGACTAA
GGCTTCCACCCTCGGCCGTGGCTACTGCGACATCGACAGCGGCGGTGGCG
GCGGCGGCGGTTCGTGCCTTTGCAGGTCTCCAGGGGAGTAAGCTCGAAGC
TGGCTTTCGTAGATACGTCGGGAGGGAAGGAAGACTGAGAGCGTGCGGCG
TGGAAGGCGAGCAGGCAGGGAGCTAGCTGCCGCGGGTCGCGGGCGGTAGA
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCTAGCGGTAGCG
GCAGCGGCGGCCATGATGCGGCGGCCACCGGCACGGCCCGGGCTGGGCAA
GAAGCCCTCGGGGGCCGGCTTCAAGATCACGTACAGCATGAACCAGCTGC
TGTCGATGGGGAAGGAGATGATGGAGTCGGAGGCGGGGTGTCCGCCGCCG
GAGGGCTGGGATACGTTCCAGTACGACACCATCGGGTGGGTTGAGATGGA
AGCTATAGGTTTGCCATAGTGATCGGGGGGTAGGTGCGTGCTCTTGCTTG
TTATCGGTGCGAAAAGCAGCTCCCCAACCCCCAACAATGCATCACCCCCC
CCATGCTCTCTGCCATCCCGTATCCCGCAGCCCCCTGATCGACGAGAACA
GCACCCGCGTCCCGAGCAAGGAAGAGGCGGCCGCCCTCAAAATGAAACCC
GGCTCCGCCCGCGACCTGCACAAGGACCACATCGCCGCGCTGGCCGCCAA
GCAGGGGACGGACCCCGAGCCATCTCCGGTGCTGGGGCCCCGTGGAGGAG
GCGACCGGGGGCGCGGGGGGAGCGACGCAAGGCGTGAG
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Coding sequence (CDS) from alignment at C-linearis_contig85:407500..408437-

>mRNA_C-linearis_contig85.16166.1 ID=mRNA_C-linearis_contig85.16166.1|Name=mRNA_C-linearis_contig85.16166.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig85:407500..408437- (Chordaria linearis ClinC8C monoicous)
ATGATGCGGCGGCCACCGGCACGGCCCGGGCTGGGCAAGAAGCCCTCGGG
GGCCGGCTTCAAGATCACGTACAGCATGAACCAGCTGCTGTCGATGGGGA
AGGAGATGATGGAGTCGGAGGCGGGGTGTCCGCCGCCGGAGGGCTGGGAT
ACGTTCCAGTACGACACCATCGGATGATGCGGCGGCCACCGGCACGGCCC
GGGCTGGGCAAGAAGCCCTCGGGGGCCGGCTTCAAGATCACGTACAGCAT
GAACCAGCTGCTGTCGATGGGGAAGGAGATGATGGAGTCGGAGGCGGGGT
GTCCGCCGCCGGAGGGCTGGGATACGTTCCAGTACGACACCATCGGCCCC
CTGATCGACGAGAACAGCACCCGCGTCCCGAGCAAGGAAGAGGCGGCCGC
CCTCAAAATGAAACCCGGCTCCGCCCGCGACCTGCACAAGGACCACATCG
CCGCGCTGGCCGCCAAGCAGGGGACGGACCCCGAGCCATCTCCGGTGCTG
GGGCCCCGTGGAGGAGGCGACCGGGGGCGCGGGGGGAGCGACGCAAGGCG
TGAGCCCCCTGATCGACGAGAACAGCACCCGCGTCCCGAGCAAGGAAGAG
GCGGCCGCCCTCAAAATGAAACCCGGCTCCGCCCGCGACCTGCACAAGGA
CCACATCGCCGCGCTGGCCGCCAAGCAGGGGACGGACCCCGAGCCATCTC
CGGTGCTGGGGCCCCGTGGAGGAGGCGACCGGGGGCGCGGGGGGAGCGAC
GCAAGGCGTGAG
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