mRNA_C-linearis_contig85.16165.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16165.1
Unique NamemRNA_C-linearis_contig85.16165.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16165.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.400e-57
Identity = 200/335 (59.70%), Postives = 226/335 (67.46%), Query Frame = 1 
Query:  148 DGLHDGGLGAHDRALAHEKAVAAGGVGAXXXXXXXXXXXXRGG-----RYGGSNEADIWDMPGSAL-EGGA-KEPPKNSRAAGLRSSDRERREKDRKKDEALAFEQELLQFQKERAKVLEARDGYVRGKSKGGPTEFPDMGGGFLGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGNRNGDKQKPS-----SFMDHLFXXXXXXXXXXXXXXXEAVAESGXXXXXXXXXG---------------FPVGGLFSFMAPGNSISTIDKFTEATRGKGVAKMFSNSPGNQPTASPSVSASLSRWGKANPNPKADAKPVAGV 1071
            DGLHDGGLGAHDRA+AHEKA+AAGG   XXXXXXXXXXXX        RYGG++EADIWDMP +   +GGA KEPPKN+RAAGLRS+DRERRE++RKKDEA AFE+E L+F++ERAKVL+ RDG   GK+ GGP EFPDMGGGFLGGG+  XXXXXXXXXXXXXXXXXXXXXX                   G+ +G + +P      S +D +F      XXXXXXXXX       XXXXXXXXX                FP GGLFSFMAPGNSISTIDKFTEATRGKG AK+FS  PG +P A+P        WGK       D KP A V
Sbjct:  262 DGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDG---GKANGGPAEFPDMGGGFLGGGIGDXXXXXXXXXXXXXXXXXXXXXX-----------------XXGSGSGSQDQPQLVKNQSVLDRVFGAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFS--PGTKPAATP--------WGKV------DKKPTANV 560
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI1.400e-5759.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:402435..406606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1102
Cds size1101
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16165.1prot_C-linearis_contig85.16165.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 402436..406606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.6652055-CDS-C-linearis_contig85:402435..4026121622930646.6652055-CDS-C-linearis_contig85:402435..402612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 402436..402612 -
1690881176.7321186-CDS-C-linearis_contig85:402435..4026121690881176.7321186-CDS-C-linearis_contig85:402435..402612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 402436..402612 -
1622930646.6792665-CDS-C-linearis_contig85:403369..4037871622930646.6792665-CDS-C-linearis_contig85:403369..403787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 403370..403787 -
1690881176.7482238-CDS-C-linearis_contig85:403369..4037871690881176.7482238-CDS-C-linearis_contig85:403369..403787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 403370..403787 -
1622930646.6924546-CDS-C-linearis_contig85:404502..4046741622930646.6924546-CDS-C-linearis_contig85:404502..404674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 404503..404674 -
1690881176.7603433-CDS-C-linearis_contig85:404502..4046741690881176.7603433-CDS-C-linearis_contig85:404502..404674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 404503..404674 -
1622930646.711312-CDS-C-linearis_contig85:405157..4052441622930646.711312-CDS-C-linearis_contig85:405157..405244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 405158..405244 -
1690881176.773688-CDS-C-linearis_contig85:405157..4052441690881176.773688-CDS-C-linearis_contig85:405157..405244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 405158..405244 -
1622930646.726997-CDS-C-linearis_contig85:405795..4060131622930646.726997-CDS-C-linearis_contig85:405795..406013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 405796..406013 -
1690881176.786032-CDS-C-linearis_contig85:405795..4060131690881176.786032-CDS-C-linearis_contig85:405795..406013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 405796..406013 -
1622930646.745409-CDS-C-linearis_contig85:406577..4066061622930646.745409-CDS-C-linearis_contig85:406577..406606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 406578..406606 -
1690881176.799611-CDS-C-linearis_contig85:406577..4066061690881176.799611-CDS-C-linearis_contig85:406577..406606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 406578..406606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16165.1

>prot_C-linearis_contig85.16165.1 ID=prot_C-linearis_contig85.16165.1|Name=mRNA_C-linearis_contig85.16165.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp
GQDARTGGGRDRDRDGGGRNPRSGRDRDREDRDRDRDRDRDRDRDRDRGD
GLHDGGLGAHDRALAHEKAVAAGGVGAASAAPGGGGGSSRGGRYGGSNEA
DIWDMPGSALEGGAKEPPKNSRAAGLRSSDRERREKDRKKDEALAFEQEL
LQFQKERAKVLEARDGYVRGKSKGGPTEFPDMGGGFLGGGLGDDDDGGGG
LLGGIEDDHPPPLSTPSASNGAGGGGDGDGGRAPGNRNGDKQKPSSFMDH
LFGGGGGGGGGGGQKGGEAVAESGQGGAVAGGGGFPVGGLFSFMAPGNSI
STIDKFTEATRGKGVAKMFSNSPGNQPTASPSVSASLSRWGKANPNPKAD
AKPVAGVNGGGGGEGGG
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mRNA from alignment at C-linearis_contig85:402435..406606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16165.1 ID=mRNA_C-linearis_contig85.16165.1|Name=mRNA_C-linearis_contig85.16165.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4172bp|location=Sequence derived from alignment at C-linearis_contig85:402435..406606- (Chordaria linearis ClinC8C monoicous)
GGGCAGGACGCGCGGACGGGCGGCGGAAGGTGCTATGCTATGGAGTATAG
TGTGACTTGAGATTCATACTTCGAAGTACCATATGTGTTTAGATACCGGT
GTTTTTTTAGGGCGGAATGACTACTGACTTATTTTTGCGCTGTAAGTACA
AGTCGGAAACCGTCTACACCTATGTGCATGCGTCCAACCTGTGAGGGGGA
GGGAAAGGAGGGGCAGGACAGGGCAGGCTTTTTTGTTTCCTGGTGTTTTT
GTTGTTGTCAAATACTGCTGTTTGGTAATTTACCATACCATTCAAGTTAT
CGGCAGTCTCGCGTCCAAATCTGTGAGACCGCGAGAGCAACGTGTTTCCA
CAGGAGGAGGACTGCCGTTGTAGATGGACAGGCACGCTAAACCTCCCTCG
CCGCCCTTCGAGTTCTCGATAAATTCAAGCCATGCTGTGAGGTTGTCTAC
TATGCTGTGAGGTTGTCTACTTCATCCGCACTCACCACGGCCATACAGAG
TTCCTTTTGCATCCTTTTGCATCTCCGAAACACCGCTGCCATTCGGATTT
TGGCGCTAATGTTAATGTTGATCGATTGGCACTGACACGGCAGGGACAGA
GACAGGGATGGCGGTGGCAGAAACCCCCGGAGCGGGAGAGACAGAGACAG
AGAGGACAGAGACCGCGATCGTGATCGTGATCGTGATCGTGATCGTGATC
GTGATAGGGGCGATGGCCTGCACGACGGCGGGCTGGGGGCGCACGACAGG
GCACTCGCCCACGAGAAGGCCGTTGCTGCCGGAGGTGTTGGCGCTGCTTC
TGCCGCCCCAGGTGATGATTGGTACATCGAGCTTCCAGTAGTTTTAGTTC
TTGTTCGCCGGAAATAGCTGTCAGCTTGATGGTGATGGTGATGGGTGTTG
GTGTTGTCGGCGGTGCTGCCCCTGCCGCTGCTTCTGCTGCCTTAGGTGCT
GATGCTGTTGTGTGTAGAAGTACATATTTGTCTTGATTCGAAGAGTTGTT
GCCTCAACGGGGGCTGGTTTTGTGGTGTCATTCAATCATTCTTGGAGTAA
GTTTCTTGTTGAGTAGACTAAGTGTTGGCTTGATGGCGATGGTGTTTGTG
TTGGTGTTGGTGTTGTTGACGCTGCTGCTACCGGAGCTGCTGCTTCTGCC
TCCTCCGCCGCTGATGCTGTTGGTGTACTTAATAATATCTCGGCACGGGT
ACAATAGTGTGCTGCTTCTTTCGTTTTGATGGGATGGCGTCTTTTGTTCG
TAACTTCGGCGCTGCTGCTGCCGCTGCCGCGGTCATAGGTGCTATTAGCA
GCTATCGATAGTGTGCTAAAACGGCGTTTGTTTGTCCGAATAATTCTCGA
ATTATGTTGCAGGCGGCGGAGGCGGCTCTTCTCGAGGAGGCCGTTACGGC
GGCAGCAATGAAGCGGACATCTGGGACATGCCGGGCAGCGCGCTGGAAGG
TGCATAGCGTGCTTGTAGATATACGAAGCCTGGACAAAAATTGAAGTTCC
ATCCCCTGCACTCTGTTTTTGTCTTGTCTTGTCTTTCGGTCAATATTTTT
CAACGTATTTGCTCCATTTTCCCTCATTTTCCGCGTGCGTTGCGCGTGCA
TTCATACTGTACTGCAAATTCAAACCACGGGGCGCCTTGCTCTCTCTCCC
CCCCGTCTCTCTCTCTTGGCAACATGAAGCTATAGCAGTACGCTTTTCTT
GGTGGCCGCAGGAAATTAGCCCGCGCCTCTTCGCGTATCATACATGCATA
CGGGCTTCGAAATAGCCTGACGAAGTGTGTACGAGTACAATTCTTACGCT
AACGATGTTGTTCTCCCATCCCATCCCGCCTCACTCCCCCACCTTGGCTT
TTTTGTTGCGTGTGACCCAAACACTAAACACGCGCACGATGGAATGGTAC
ACGCACGATGGTGTTTGGCATGGTACCATCAGGAGGGGCCAAGGAACCCC
CGAAGAACTCGCGAGCCGCAGGGCTCCGCAGCTCGGACCGGGAAAGGCGA
GAGAAGGACCGCAAGAAGGACGAGGCCCTAGCGTTCGAGCAGGAGCTGCT
TCAGTTCCAGAAGGAGCGGGCGAAGGTGCTCGAGGCGCGCGACGGGTACG
TGCGGTACGATACGATACGATGTGTTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGTTG
TTGTTGCTGTTGCTGCTGTTGTTGTGCGTTCAACAAGTGAAGATCAAAGT
TGAGGCTCAGATGTATGTCTGAAGGTTCAGGATCAGGTTCAGATTCAGAT
TTTGTGACGTTTTGATGTGACGTTTGAGGTCAAGATTTGCGGAGTCTCTT
TGCTGCTGTACCTCGCATGCCGCACGTGTTTGCGACCTCATGTAACCCAC
TAGAGTTGGTTAAGTATGTATGTATACATATGTTGTATGTTGTTTGTTGC
TTCTTTTTTTTTCGCTGTTTTGTCTTTTGTTGTGTTTCGTGTTTTGTCTG
TTTCTATGTTTGCCACATGCCAGCAGTCTTCTACGTCCCAACCTGCGACT
AGAGTCTTCTCGCCTGAAGTTTATTTTTTACTTTAACTTAAACAAGTATA
CGTTGATTGTAGTGTTTTTTTTTTTTTTTTTGTGTGCTTGTCGCCCGGCA
AGTGACTAAAATAGTCTTCCTCCATTCGAAAATATTTTTATCTTGTGCTC
ATGTTTACGGTGTGCTCATATGGTGTGCGGTGGTGTGCTGTGGTGTGCTG
TGGTGTGCGGTGGTGTGCGGTGGTGTGCGGTCCTCTCCGTCAATTGTCCT
TTGATGTCTTTGATGTCAGGGGCAAGTCGAAGGGAGGCCCTACGGAGTTC
CCGGACATGGGCGGCGGCTTCCTGGGCGGGGGCCTCGGAGACGACGACGA
CGGCGGTGGCGGCTTGCTGGGCGGCATAGAGGACGACCACCCTCCCCCTC
TCTCCACCCCCTCCGCTAGCAACGGGGCCGGCGGCGGCGGGGATGGGGAT
GGAGGAAGGGCACCAGGCAATCGGAATGGCGACAAGCAGAAGCCTTCTTC
CTTCATGGACCATCTCTTTGGGGGTGGCGGCGGCGGCGGCGGTGGTGGTG
GGCAGAAGGGGGGCGAAGCTGTCGCAGAGTCTGGGCAGGGCGGCGCCGTG
GCGGGTGGAGGAGGGTTCCCTGTGGGGGGGTTGTTTTCGTTCATGGCCCC
CGGGAACAGCATCTCGACGATCGACAAGTTCACCGAGGTGAGGCTGCACC
ACGAAAAATGAAAAATTATACCTGGTAGGTATTTGATGCTTGAGTCCCGG
AGCTGGAAGGAGGGAGGGGCAGAGAGTTGGCAGTGGCGGTACGCTGTACG
CTGTACGCGCTTCTGTTTCGTGTGTTGGGTGGTTCGAATGGTTGGTTCCA
AGTCGGTTTACAATATAGTACGAGGGTTCAGTAGCAGCGTCCGTTGTTGG
CGCGCGGGTGATACGTATGTTGGGTGCGAGGTTTACGCTGTTTTGCCAAA
GACGTGGTTGTTTCTTTTTTCAGACGTGTGATGGGTGCTACAAGCTACAA
GTATGGCCTTCGCTTTCGGGGCGTATGCGCACGGAGCGGCGGGCTTCATG
TCTTTATATTTTTTCGATCTTGTTCTTTTTGGGTTCCATCTCTTGTATCT
TGGACTTGTATCTTGGATCTTGCTTTCGTCTCTTCGTGTAGTCCCTAGAG
CCGTATTTAACCCCCAAAAGCCAGCCAACAGGTCCCCTCCCCGCCTCATT
CTCTCTTTGTCTCAGCCAACCCAACCCAACCCAACCCTTTTTAAAGTACA
ACAAATACATCTGTGACGAAAGACGTTGATTTGGTTTGGGTGGGTGGGTG
GGTGGTGGGTTGTTGGTGGGTTGGGTCAGAGCATCCCAACTATATCGTCA
TGACTGCCAAGCCAAGGCTTTTTTATCATTCCTGCCCCACCCGCCGCCTG
CCTGAATGATACGACACTTGGATGGTTAATTAATTTACAACAAGGCGACG
CGAGGGAAGGGGGTGGCCAAGATGTTCTCCAACTCCCCCGGAAACCAGCC
CACGGCCTCTCCCTCTGTCTCTGCCTCGCTGTCTCGGTGGGGGAAGGCTA
ACCCGAACCCTAAGGCTGACGCCAAGCCTGTCGCCGGGGTAAACGGCGGC
GGGGGCGGCGAGGGAGGGGGCA
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Coding sequence (CDS) from alignment at C-linearis_contig85:402435..406606-

>mRNA_C-linearis_contig85.16165.1 ID=mRNA_C-linearis_contig85.16165.1|Name=mRNA_C-linearis_contig85.16165.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at C-linearis_contig85:402435..406606- (Chordaria linearis ClinC8C monoicous)
GGGCAGGACGCGCGGACGGGCGGCGGAAGGGGCAGGACGCGCGGACGGGC
GGCGGAAGGGACAGAGACAGGGATGGCGGTGGCAGAAACCCCCGGAGCGG
GAGAGACAGAGACAGAGAGGACAGAGACCGCGATCGTGATCGTGATCGTG
ATCGTGATCGTGATCGTGATAGGGGCGATGGCCTGCACGACGGCGGGCTG
GGGGCGCACGACAGGGCACTCGCCCACGAGAAGGCCGTTGCTGCCGGAGG
TGTTGGCGCTGCTTCTGCCGCCCCAGGGACAGAGACAGGGATGGCGGTGG
CAGAAACCCCCGGAGCGGGAGAGACAGAGACAGAGAGGACAGAGACCGCG
ATCGTGATCGTGATCGTGATCGTGATCGTGATCGTGATAGGGGCGATGGC
CTGCACGACGGCGGGCTGGGGGCGCACGACAGGGCACTCGCCCACGAGAA
GGCCGTTGCTGCCGGAGGTGTTGGCGCTGCTTCTGCCGCCCCAGGCGGCG
GAGGCGGCTCTTCTCGAGGAGGCCGTTACGGCGGCAGCAATGAAGCGGAC
ATCTGGGACATGCCGGGCAGCGCGCTGGAAGGCGGCGGAGGCGGCTCTTC
TCGAGGAGGCCGTTACGGCGGCAGCAATGAAGCGGACATCTGGGACATGC
CGGGCAGCGCGCTGGAAGGAGGGGCCAAGGAACCCCCGAAGAACTCGCGA
GCCGCAGGGCTCCGCAGCTCGGACCGGGAAAGGCGAGAGAAGGACCGCAA
GAAGGACGAGGCCCTAGCGTTCGAGCAGGAGCTGCTTCAGTTCCAGAAGG
AGCGGGCGAAGGTGCTCGAGGCGCGCGACGGGTACGTGCGGAGGGGCCAA
GGAACCCCCGAAGAACTCGCGAGCCGCAGGGCTCCGCAGCTCGGACCGGG
AAAGGCGAGAGAAGGACCGCAAGAAGGACGAGGCCCTAGCGTTCGAGCAG
GAGCTGCTTCAGTTCCAGAAGGAGCGGGCGAAGGTGCTCGAGGCGCGCGA
CGGGTACGTGCGGGGCAAGTCGAAGGGAGGCCCTACGGAGTTCCCGGACA
TGGGCGGCGGCTTCCTGGGCGGGGGCCTCGGAGACGACGACGACGGCGGT
GGCGGCTTGCTGGGCGGCATAGAGGACGACCACCCTCCCCCTCTCTCCAC
CCCCTCCGCTAGCAACGGGGCCGGCGGCGGCGGGGATGGGGATGGAGGAA
GGGCACCAGGCAATCGGAATGGCGACAAGCAGAAGCCTTCTTCCTTCATG
GACCATCTCTTTGGGGGTGGCGGCGGCGGCGGCGGTGGTGGTGGGCAGAA
GGGGGGCGAAGCTGTCGCAGAGTCTGGGCAGGGCGGCGCCGTGGCGGGTG
GAGGAGGGTTCCCTGTGGGGGGGTTGTTTTCGTTCATGGCCCCCGGGAAC
AGCATCTCGACGATCGACAAGTTCACCGAGGGGCAAGTCGAAGGGAGGCC
CTACGGAGTTCCCGGACATGGGCGGCGGCTTCCTGGGCGGGGGCCTCGGA
GACGACGACGACGGCGGTGGCGGCTTGCTGGGCGGCATAGAGGACGACCA
CCCTCCCCCTCTCTCCACCCCCTCCGCTAGCAACGGGGCCGGCGGCGGCG
GGGATGGGGATGGAGGAAGGGCACCAGGCAATCGGAATGGCGACAAGCAG
AAGCCTTCTTCCTTCATGGACCATCTCTTTGGGGGTGGCGGCGGCGGCGG
CGGTGGTGGTGGGCAGAAGGGGGGCGAAGCTGTCGCAGAGTCTGGGCAGG
GCGGCGCCGTGGCGGGTGGAGGAGGGTTCCCTGTGGGGGGGTTGTTTTCG
TTCATGGCCCCCGGGAACAGCATCTCGACGATCGACAAGTTCACCGAGGC
GACGCGAGGGAAGGGGGTGGCCAAGATGTTCTCCAACTCCCCCGGAAACC
AGCCCACGGCCTCTCCCTCTGTCTCTGCCTCGCTGTCTCGGTGGGGGAAG
GCTAACCCGAACCCTAAGGCTGACGCCAAGCCTGTCGCCGGGGTAAACGG
CGGCGGGGGCGGCGAGGGAGGGGGCGCGACGCGAGGGAAGGGGGTGGCCA
AGATGTTCTCCAACTCCCCCGGAAACCAGCCCACGGCCTCTCCCTCTGTC
TCTGCCTCGCTGTCTCGGTGGGGGAAGGCTAACCCGAACCCTAAGGCTGA
CGCCAAGCCTGTCGCCGGGGTAAACGGCGGCGGGGGCGGCGAGGGAGGGG
GC
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