mRNA_C-linearis_contig85.16143.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.460e-55 Identity = 165/253 (65.22%), Postives = 183/253 (72.33%), Query Frame = 2
Query: 506 ALLNKIDTTDDACDLEYAIILACRRGHLAVVKTLLRYGCDVKTRQYDFDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKLAYGNTENISVMNAILDSGAGADEKELGDFLD----QVSSDDNPYEASLMLLRRGAPVNITRYRGKTPLHQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASNSRLVPAVMEAVQELLDNAPGDRRWRRRGWLVMLRA 1252
ALL+ ID C LE+ IILACRRGH AVVKTLL GCDVKT Q+DFDQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ Y T+ +VM AILDSGA DE+ELG L + S+ +N Y+A LMLL+RGAPVN Y G+TPLH ++ C VVDLLLRWGADET+KDE G+TPAD L L PAV E V+ LL NAP DR WRRRGWLVMLRA
Sbjct: 176 ALLSDIDGD---CFLEFTIILACRRGHFAVVKTLLDNGCDVKTSQFDFDQPLICAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAGAEREYDYSATKTKAVMEAILDSGAEPDEEELGYLLSVGVCKTSTLENMYDARLMLLQRGAPVNFCSYGGQTPLHHIMNRGSCVPSVVDLLLRWGADETMKDERGKTPADYLGRIRNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLRA 425
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K) HSP 1 Score: 100 bits (249), Expect = 2.860e-19 Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 2
Query: 851 NISVMNAILDSGAGAD-EKELGDFLDQVSSDDNPYEASLMLLRRGAPVNITR-YRGKTPLHQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASNSRL--VPAVMEAVQELLDNAPGDRRWRRRGWLVML 1246
++ V +L++GA A E ++G+ S + +L+LLR GA VN + G + LH + +E +VDLLLRWGADET+ D+ G+TP DV S +R E V++LL NAP DR WRRRGWLVML
Sbjct: 341 HLCVSATLLEAGANASAEDQMGESSLSSDSWSCSVDMALLLLRYGADVNASGGLFGSSALHNAIKNRDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQRTAETKERVRKLLVNAPADRTWRRRGWLVML 476
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 4.580e-17 Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 2
Query: 851 NISVMNAILDSGAGAD-EKELG-DFLDQVSSDDNPYEASLMLLRRGAPVNITRYR-GKTPLHQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASN--SRLVPAVMEAVQELLDNAPGDRRWRRRGWLVML 1246
++ V +L++GA A E + G L ++ + + +L+LLR GA VN Y G + LH +E +VDLLLRWGADET+ D G+TP + L + +R + V++LL NAP DR WRRRGWLVML
Sbjct: 282 HLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVML 418
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.400e-14 Identity = 55/151 (36.42%), Postives = 78/151 (51.66%), Query Frame = 2
Query: 836 YGNTENISVMNAILDSGAGADEKELGDFLD------QVSSDDNPYEASLMLLRRGAPVNITRYRGKTPLHQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLAS------NSRLVPAVMEAVQELLDNAPGDRRWRRRGWLVMLRA 1252
+G +N +V+ +L++G G + + DFL V + +L LL GA N TPLH V H + V+LLLRWGADET +++G PADV+ N V A + ++ +L AP DR WRRRGWLV+ R+
Sbjct: 287 HGPLDNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLH--VACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRS 435
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 3.850e-14 Identity = 47/103 (45.63%), Postives = 57/103 (55.34%), Query Frame = 2
Query: 968 LLRRGAPVNITRYRGKTPLHQQVDGSHCS-EKVVDLLLRWGADETIKDEDGQTPADVLASNSRLV----PAVMEAVQE---LLDNAPGDRRWRRRGWLVMLRA 1252
L + GA V + +G TPLH+ H E VD+LLRWGADET + G +PAD L V PA + + LL AP DR WRRRGWLVMLR+
Sbjct: 4 LFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRS 106
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.390e-13 Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = 2
Query: 854 ISVMNAILDSGAGA---DEKELGDFLDQVSSDDNPYEASLMLLRRGAPVNITRYRGKTPL--HQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASNSRLVPAVM-----EAVQELLDNAPGDRRWRRRGWLVMLRA 1252
++ ++ ++++GA D+ + FLD S+ + +EA+L L + GA + RG+TPL + G +VD+LLR GADET + DG+T A+V+ + + E V++LL+NAP DR WRRRG LV+ RA
Sbjct: 201 VAAIDVLVEAGAHVEVEDDDDCTPFLDACSN--HCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRA 341
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.410e-12 Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 2
Query: 968 LLRRGAPV-NITRYRGKTPLH----QQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLAS----NSRLVPAVMEAVQELLDNAPGDRRWRRRGWLVMLRA 1252
LL+ A V N G TPLH +Q +G S +DLLLRWGADET +++ G+TP DVL + N P ++ + LL AP DRRWRRRGWLV+LR+
Sbjct: 327 LLQNNASVRNRFDATGDTPLHRACVEQREGLAAS---IDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRS 427
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.660e-12 Identity = 52/110 (47.27%), Postives = 61/110 (55.45%), Query Frame = 2
Query: 953 EASLMLLRRGAPVNITRYRGKTPLH----QQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASNSRLVPAVMEAVQE------LLDNAPGDRRWRRRGWLVMLRA 1252
EA +LLR GA N G PLH +Q G +VVDLLLRWGA ET ++ G TPA+V RL +A +E LL AP DR WRRRGW+VMLRA
Sbjct: 253 EALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVM---EVVDLLLRWGASETAVNKHGNTPAEVF---QRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRA 356
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 3.410e-12 Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 2
Query: 968 LLRRGAPVNITRYRGKTPLHQQVDGSHCS-EKVVDLLLRWGADETIKDEDGQTPADVLASNSRLVPAVMEAVQELLDNAPGDRRWRRRGWLVMLRA 1252
LLR+GA VN G TPLH + + DLLLRWGADET D +G TP + +S +A++ +LD AP DR WRRRG L+M RA
Sbjct: 344 LLRKGADVNAESDNGLTPLHMLCMKPRLNPDDTADLLLRWGADETAIDNEGYTPKARIVGSSN----GSQALRHMLDKAPVDRAWRRRGTLIMCRA 435
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 3.920e-12 Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 2
Query: 854 ISVMNAILDSGAGA---DEKELGDFLDQVSSDDNPYEASLMLLRRGAPVNITRYRGKTPL--HQQVDGSHCSEKVVDLLLRWGADETIKDEDGQTPADVLASNSRLVPAVM-----EAVQELLDNAPGDRRWRRRGWLVMLRA 1252
++ ++ ++++GA D+ + FLD + + +EA+L L + G+ + RG+TPL + G +VD+LLR GADET + DG+T A+V+ + + E V++LL+NAP DR WRRRG+LV+ RA
Sbjct: 152 VAAIDVLVEAGAHVEVEDDDDCTPFLDACIN--HCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRA 292 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig85.16143.1 >prot_C-linearis_contig85.16143.1 ID=prot_C-linearis_contig85.16143.1|Name=mRNA_C-linearis_contig85.16143.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp MGTVQALLYAFDGKRTSSTVNAGKRTALQLAARENHAPVVEKLLNAGADVback to top mRNA from alignment at C-linearis_contig85:12788..14039+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig85.16143.1 ID=mRNA_C-linearis_contig85.16143.1|Name=mRNA_C-linearis_contig85.16143.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1252bp|location=Sequence derived from alignment at C-linearis_contig85:12788..14039+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig85:12788..14039+ >mRNA_C-linearis_contig85.16143.1 ID=mRNA_C-linearis_contig85.16143.1|Name=mRNA_C-linearis_contig85.16143.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig85:12788..14039+ (Chordaria linearis ClinC8C monoicous)back to top |