mRNA_C-linearis_contig84.16141.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16141.1
Unique NamemRNA_C-linearis_contig84.16141.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: D8LMQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ6_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 9.850e-68
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 2
Query:  107 MNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            MNRCASGIKGVLETLAN+LKQ EEEIKADEAGK EFER L+Q L EKK+EIE+RI+ N RWT+SFDQDLGPF KMY+AKT+EIASIYDDAK RH+EG+KVLVNEF+YHPEFFRP+D FHATPFVPK
Sbjct:    1 MNRCASGIKGVLETLANKLKQQEEEIKADEAGKLEFERRLSQ-LREKKREIESRIDANMRWTASFDQDLGPFAKMYKAKTKEIASIYDDAKARHREGVKVLVNEFNYHPEFFRPKDGFHATPFVPK 125          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A7S2V5K3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5K3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.870e-40
Identity = 73/134 (54.48%), Postives = 91/134 (67.91%), Query Frame = 2
Query:   83 ITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            IT K F  MNR A+G+KGVL+ L NQLK LEEEIKADE GK EFER LA  L  +K+++  RI+ N  W S++D D+GPF+  Y     +I  +Y  AK+ HK+ I VL  EF YHPEF RP D+F A+PF PK
Sbjct:   17 ITLKQFDLMNRTANGVKGVLDNLRNQLKVLEEEIKADEDGKAEFERQLAN-LQRRKEDLLKRIKENREWASTYDSDMGPFQSNYDNIAHDIGDLYSGAKKHHKQAIGVLKREFGYHPEFKRPTDTFSASPFRPK 149          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A2D4BM09_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM09_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.550e-30
Identity = 59/133 (44.36%), Postives = 90/133 (67.67%), Query Frame = 2
Query:   86 TTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            + K    MNR  SGI GVLETL  ++  L+ EI+ADE+GKQ+++  L + LGE+++++++++     W ++F+  + P E  Y A T+ +   Y+DAK RH +GI+VL++EFDYHPEF R  D+F A PF PK
Sbjct:   53 SAKDAHTMNRVTSGISGVLETLQMKIDLLDREIRADESGKQDYDDQLFR-LGERRRDLDSKLRQCRDWIATFESKIQPLEGKYDATTQLMQQQYEDAKLRHAQGIQVLIDEFDYHPEFKRYSDTFSAVPFRPK 184          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A1W0A799_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A799_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.790e-28
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 2
Query:   83 ITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +  K    MNR  SGI GVLETL  ++  L++EIKAD  GK+++E  L + L  +K++I  +++   RWT  F   + P E  Y+A T E+++ YD AK +H +G++VL++ F+YHPE+ R  D F A PF PK
Sbjct:   21 VNAKEAANMNRSTSGIAGVLETLQGKMDVLDKEIKADMKGKKDYEDELFK-LQTRKEDILVKLKECQRWTDLFASKIQPLENSYKATTVEMSNEYDQAKVKHAQGLQVLIDNFNYHPEYKRYNDEFSAVPFRPK 153          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A7S3DC27_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DC27_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 9.710e-28
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  107 MNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +N  AS I  +LE     ++QL  EIKAD+ G +++ER L   L  +K+++E RIE NT+W +S+D ++GPF + Y   T ++  +YD+AKE+H  G+ +L  EF+YHP F R  D F A PF P+
Sbjct:   17 LNSNASNIANLLENAQTAVEQLNTEIKADDKGIEDWERQLGY-LTRRKRDLEKRIEANTKWATSYDGEIGPFTQKYDNFTSDLGKLYDNAKEKHAGGLDILKEEFEYHPAFKRWHDYFSAVPFKPE 141          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A8K1CM03_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM03_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 1.040e-27
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  107 MNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            MNR  SG+ GVLE+L  ++  L+ EIKADE GKQ+++  L + L E++ + E ++     W  +F+  + P E  Y A T+ +   Y DAK RH +GI+VL+++FDYHPEF R  D+F A PF PK
Sbjct:   32 MNRVTSGVSGVLESLQMRIDMLDREIKADEKGKQDYDDQLFR-LNERRTDYENKLRQCRDWIETFESKIRPLEGKYDATTQLMQEQYGDAKLRHAQGIQVLIDQFDYHPEFKRYSDTFSAVPFRPK 156          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A662WQL8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQL8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.440e-27
Identity = 58/133 (43.61%), Postives = 81/133 (60.90%), Query Frame = 2
Query:   86 TTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +TK  R MNR  SGI G LE +   + QL  EIKADE GKQ+++  L + L +++K++E ++     W++ F+  + P    Y   T  +   Y+DAK RH +GIKVL+  FDYHPEF R  D+F A PF PK
Sbjct:   24 STKDARKMNRVTSGIGGALEGVQMTINQLNREIKADEKGKQDYDDQLFR-LNQRRKDMEAKLLECREWSALFESKIKPLAGKYTETTDNMQGQYEDAKLRHAQGIKVLIENFDYHPEFKRFSDTFSAVPFKPK 155          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: T0RR79_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RR79_SAPDV)

HSP 1 Score: 109 bits (272), Expect = 1.980e-27
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 2
Query:   83 ITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +T K    MNR  SGI G L+TLA ++  LE EIKAD  GK+++E  L + +  +K++I  ++    RW   F   + P E  Y A T E++  YD AK +H +G++VL++ F+YHPE+ R  D F A PF PK
Sbjct:   22 VTAKEASNMNRSTSGIAGALDTLAGRMDMLEREIKADMKGKKDYEDELFK-INTRKEDIMRKLAECERWNGIFQSKIKPLENSYLATTVEMSEEYDQAKIKHAQGLQVLIDNFNYHPEYKRYNDDFSAVPFRPK 154          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A485L8Q1_9STRA (Aste57867_17265 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8Q1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.590e-27
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   83 ITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +T K    MNR  SGI GVL++L  ++  L+ EIKAD+ GK+++E  L + L  ++++I  ++    RW   F   + P E  Y A T E++  YD+AK +H  G++VLV+ F+YHPEF R  D F A PF PK
Sbjct:   22 VTPKESSNMNRSTSGIAGVLDSLKGKIDILDREIKADQKGKKDYEDELFK-LNTRREDITKKLNECQRWIDLFASKIQPLENSYSATTAEMSDEYDEAKIKHASGLQVLVDNFNYHPEFKRYNDDFTAVPFRPK 154          
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Match: A0A6G0XHA4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHA4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.590e-27
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 2
Query:   83 ITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERILAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 484
            +T K    MNR  SGI GVL++L  ++  L+ EIKAD  GK+++E  L + L  +K++I  ++    RW   F   + P E  Y+A T E+++ Y++AK +H  G++VL++ F+YHPEF R  D F A PF PK
Sbjct:   22 VTPKEASNMNRSTSGIAGVLDSLKGKIDDLDAEIKADRKGKKDYEDELFK-LNTRKQDITAKLNECQRWIDLFASKIQPLENSYKATTGEMSNEYEEAKIKHANGLQVLIDNFNYHPEFKRYNDDFTAVPFRPK 154          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ6_ECTSI9.850e-6882.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V5K3_9STRA4.870e-4054.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BM09_PYTIN1.550e-3044.36Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A1W0A799_9STRA6.790e-2842.54Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S3DC27_9EUKA9.710e-2842.86Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A8K1CM03_PYTOL1.040e-2744.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WQL8_9STRA1.440e-2743.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
T0RR79_SAPDV1.980e-2741.79Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A485L8Q1_9STRA5.590e-2741.79Aste57867_17265 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XHA4_9STRA5.590e-2741.04Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:811884..813077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue2e-52
Seed eggNOG ortholog2880.D8LMQ6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ2R@1,2S82N@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003290.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size487
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16141.1prot_C-linearis_contig84.16141.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 811884..813004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.7765625-CDS-C-linearis_contig84:811883..8121381622930641.7765625-CDS-C-linearis_contig84:811883..812138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 811884..812138 -
1690881174.5887313-CDS-C-linearis_contig84:811883..8121381690881174.5887313-CDS-C-linearis_contig84:811883..812138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 811884..812138 -
1622930641.7935536-CDS-C-linearis_contig84:812495..8125941622930641.7935536-CDS-C-linearis_contig84:812495..812594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 812496..812594 -
1690881174.6025784-CDS-C-linearis_contig84:812495..8125941690881174.6025784-CDS-C-linearis_contig84:812495..812594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 812496..812594 -
1622930641.809174-CDS-C-linearis_contig84:812944..8130041622930641.809174-CDS-C-linearis_contig84:812944..813004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 812945..813004 -
1690881174.6109936-CDS-C-linearis_contig84:812944..8130041690881174.6109936-CDS-C-linearis_contig84:812944..813004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 812945..813004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.8208961-UTR-C-linearis_contig84:813004..8130771622930641.8208961-UTR-C-linearis_contig84:813004..813077Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 813005..813077 -
1690881174.622344-UTR-C-linearis_contig84:813004..8130771690881174.622344-UTR-C-linearis_contig84:813004..813077Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 813005..813077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16141.1

>prot_C-linearis_contig84.16141.1 ID=prot_C-linearis_contig84.16141.1|Name=mRNA_C-linearis_contig84.16141.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
MAPITTKHFRGMNRCASGIKGVLETLANQLKQLEEEIKADEAGKQEFERI
LAQQLGEKKKEIETRIETNTRWTSSFDQDLGPFEKMYQAKTREIASIYDD
AKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK*
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mRNA from alignment at C-linearis_contig84:811884..813077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16141.1 ID=mRNA_C-linearis_contig84.16141.1|Name=mRNA_C-linearis_contig84.16141.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1194bp|location=Sequence derived from alignment at C-linearis_contig84:811884..813077- (Chordaria linearis ClinC8C monoicous)
CCTCTGATGTGCTCTCCCTCCTCTCCGTCCCAGTTTTCCCGTACCTGGGC CAGGTCTTCACGGGGACGTAGTCATGGCTCCCATTACCACGAAACACTTT AGAGGGATGAATCGGTGCGCAAGTGGCATAAAGGTACGCCACGGACATGT CGGGCAATTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTT CTCTCTCCCTTGTCTCTCCAATCCGGTATGCATGAACTTGTCGTGATACT TCTATATATTTGTTACGCATGTGGACTATCTTTCAAATGCGTTTCTGGAG ACTTTCCTTACCTTGCACCCGAGGTTAGCACGCGCGGCGGGATTTACGAC ACATGGATAGTTGAAAGAATGTAAACACGCCACGTGGTAGATACAAAGCT TACTCCCAGCATTCGAGGTCGAAAATACCGATATCCCCCGATGAACGTGT GCTCGCGATGCTTTCGGTTGACTAATCTTCCAGGGTGTGCTGGAAACGCT GGCCAACCAGCTGAAGCAGCTCGAGGAGGAGATCAAAGCCGACGAGGCGG GCAAGCAGGAGTTCGAACGAATACTAGCTCAGGTGGGAGAGCACCCTGAA CTTAAATGCACTATTATTGTAGACATTACCGGGATCAAGAAATCCACTCT TTACGGTCCACAAAATACCTCTTGAAGACACTTGGATTTTTGGATCAAAT GGGCCAATTGATACGTGTTAAGTTCGCGGTTGGTTTTTTATTTTCAATGT AGACTGCCTCCTTGGCATATATATCTGTGACTTGGCTGCCAGCCCAATGA AATGCGAAAGTTGCGATCAGAACAAGTAGACATGCTTCGCGTACACACTA GAGTGCGGATCGAGTTGCCTGTGGCCTCTGGAGTTTATCGGACGTTTCAC TTGGCCCGTCTTCCAAACGTTCTCCAACCAATATCAAAGCAGCTGGGAGA GAAGAAGAAGGAAATCGAGACTCGCATAGAGACCAACACACGGTGGACAT CCAGCTTTGACCAAGACTTAGGGCCGTTCGAGAAGATGTACCAGGCCAAA ACAAGAGAGATTGCGTCGATTTATGACGACGCCAAAGAGCGACACAAGGA AGGCATCAAGGTTCTTGTCAACGAGTTTGACTACCACCCGGAGTTTTTCC GGCCTAGAGACAGTTTTCATGCAACACCGTTTGTGCCTAAGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig84:811884..813077-

>mRNA_C-linearis_contig84.16141.1 ID=mRNA_C-linearis_contig84.16141.1|Name=mRNA_C-linearis_contig84.16141.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig84:811884..813077- (Chordaria linearis ClinC8C monoicous)
ATGGCTCCCATTACCACGAAACACTTTAGAGGGATGAATCGGTGCGCAAG
TGGCATAAAGATGGCTCCCATTACCACGAAACACTTTAGAGGGATGAATC
GGTGCGCAAGTGGCATAAAGGGTGTGCTGGAAACGCTGGCCAACCAGCTG
AAGCAGCTCGAGGAGGAGATCAAAGCCGACGAGGCGGGCAAGCAGGAGTT
CGAACGAATACTAGCTCAGGGTGTGCTGGAAACGCTGGCCAACCAGCTGA
AGCAGCTCGAGGAGGAGATCAAAGCCGACGAGGCGGGCAAGCAGGAGTTC
GAACGAATACTAGCTCAGCAGCTGGGAGAGAAGAAGAAGGAAATCGAGAC
TCGCATAGAGACCAACACACGGTGGACATCCAGCTTTGACCAAGACTTAG
GGCCGTTCGAGAAGATGTACCAGGCCAAAACAAGAGAGATTGCGTCGATT
TATGACGACGCCAAAGAGCGACACAAGGAAGGCATCAAGGTTCTTGTCAA
CGAGTTTGACTACCACCCGGAGTTTTTCCGGCCTAGAGACAGTTTTCATG
CAACACCGTTTGTGCCTAAGTGACAGCTGGGAGAGAAGAAGAAGGAAATC
GAGACTCGCATAGAGACCAACACACGGTGGACATCCAGCTTTGACCAAGA
CTTAGGGCCGTTCGAGAAGATGTACCAGGCCAAAACAAGAGAGATTGCGT
CGATTTATGACGACGCCAAAGAGCGACACAAGGAAGGCATCAAGGTTCTT
GTCAACGAGTTTGACTACCACCCGGAGTTTTTCCGGCCTAGAGACAGTTT
TCATGCAACACCGTTTGTGCCTAAGTGA
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