mRNA_C-linearis_contig84.16132.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16132.1 vs. uniprot
Match: D8LMT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT0_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 1.820e-136 Identity = 372/911 (40.83%), Postives = 416/911 (45.66%), Query Frame = 3
Query: 39 MNHAEAFGHLRSFVVGLEVKARDLRKVLESSRDKDGKWVNGKDGTGIGERCARAVGAASPEQVTKDMIAEVAEQDKLMRQVEDTMRTEHPIQEATEKYQALVEYNQLALEDLEERLAAYGYVRPARVCLNNEGAVD---PPAVSSVARLPARTKTAEKSTKENGGRGDGNTGXXXXXXXXXXXXXXAPAECREEKEP---VARGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDHSHGAENSAAMAGEPGMGEEDETASAD---------QEEKGGVVTPARPALVVREEPEGEPGSPPTPASP-------GLADWEIMEE--TREMLRRAQPXXXXXXXXXXXXXXXXTNATAPRSLEALLAENTADPAAXXXXXXXXXXXXXSSNWSPPPSTTKDALSRYGSGSSGSSGGQSTCVGVKGHGRRGGGVXXXXXXXXXXXXXXXSTAVTGTGASMSAWGSSSNPPTPARMGFEDDGRWTPGGQAAPVAGVGG-RESSLGSPGLSFTSPLKNDATAHLVETAMSCGKQLD-ASTPSEKDS--NGPVMSPPKPTPMQRSSLQGDEASLEGSLPKKGPRGDFWGNTSPASSVVASSQEGTGEQPAPMGPATPATPKVLSPRFRIESSGXXXXXXXXXXXXXXXXXXXXXXXXGSSGRVTRLSSRNMAAIPNVAGGXXGGIVNDNNSTRSGSGRDEEELDGYDSERCPAPELSSPLRSTNISARDLQVLTPSVARADCGGNSTLGNGSYRRDGXXXXXXXXXXXXDSDACPTPELSSPLRSAGSAALCRRRLEEAGGDADAYDDQAASGGG----PLELVSEEEYAKAPKFLTIQVSRSVLNDTIRNLNAYAAPRLATPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEMKGHRMYRIR 2675
M+HAEAFG L SF+VGLE KARDLRKVLESSR++DGKWVNGKDGTGIGERC+RA+GAASP QVTK+MIAEVAEQD+LMRQ E+TMRT+ PI+EATEKYQALVEYNQLALEDLEERL+AYGYVRPARV L+ AV PP VSSVARLP KT GGR N P +C VA GD XXXX G + G E A EE+E A AD GGV TPAR A + EGE GLADWEI E +R RR Q R + D D SG +G++ T +TG A+ GSSSNPPTPARM FE WTP + AGVGG R SS G+P L F SPL +D TA L+ETA+S GK+ D ASTPSE+ + +G ++ PKPTP++R SLQG+EAS+ G LPK GPRGDFWGN SP SSVVASS+E T E P P TP TP AALCRRRLEEA GD DD +G G PL+ VSEEEYA+APKFLTIQVSRSVLNDTI NLNAYA PRLA+PSELLLTVDEIM IIDQGELSRTLLLSAAHLKRIEMKG RMYRIR
Sbjct: 1 MSHAEAFGQLGSFMVGLETKARDLRKVLESSRNEDGKWVNGKDGTGIGERCSRAIGAASPGQVTKEMIAEVAEQDRLMRQAEETMRTDRPIEEATEKYQALVEYNQLALEDLEERLSAYGYVRPARVALDTNTAVATAAPPGVSSVARLPTGAKT--------GGRPAAN-----------GCHKSRPHQCETRGGGGGFVAAGDGAATAXXXXAAGTEKEGDAESGEGLEAGGVTTGAEAFVGSGVAGGGEVGAEE-------EEEEDAIADGAVAXXXXXXXGTGGVATPARAASTLPVPQEGEXXXXXXXXXXXXXXXXXGLADWEITEAGLSRSSSRRQQ-----------------------RRRSCGVGVGRVD----------------------------DGTPSESSGGAGAA----------------------------------DTPMTGRAAASPWGGSSSNPPTPARMKFEG---WTP--EERDPAGVGGNRVSSTGTPSLGFRSPLNSDVTASLIETALSVGKRPDVASTPSEEGACRSGTEITRPKPTPIKRVSLQGNEASVTGGLPK-GPRGDFWGNASPESSVVASSRENTAEH-RPDPPRTPETPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AALCRRRLEEADGDGSRGDDDEVAGVGGSIGPLDFVSEEEYARAPKFLTIQVSRSVLNDTIGNLNAYAEPRLASPSELLLTVDEIMGIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 627
BLAST of mRNA_C-linearis_contig84.16132.1 vs. uniprot
Match: A0A6H5JNT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT8_9PHAE) HSP 1 Score: 134 bits (338), Expect = 7.990e-34 Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 3
Query: 2448 APKFLTIQVSRSVLNDTIRNLNAYAAPRLATPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEMKGHRMYRIR 2675
APKFLTIQVSRSVLN+T+ NLNAYAAPRLA+PSELLLTVDEIM IIDQGELSRTLLLSAAHLKRIEMKG RMYRIR
Sbjct: 3 APKFLTIQVSRSVLNETVGNLNAYAAPRLASPSELLLTVDEIMGIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 78
BLAST of mRNA_C-linearis_contig84.16132.1 vs. uniprot
Match: A0A6H5JWA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA7_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.070e-32 Identity = 98/192 (51.04%), Postives = 113/192 (58.85%), Query Frame = 3
Query: 1944 SGRVTRLSSRNMAAIPNVAGGXXGGIVNDN-NSTRSGSGRDE-EELDGYDSERCPAPELSSPLRSTNISARDLQVLTPSVARADCGGNSTLGNGSYRRDGXXXXXXXXXXXXDSDACPTPELSSPLRSAGSAALCRRRLEEAGGDADAYDDQAASG----GGPLELVSEEEYAKA---------PKFLTIQV 2474
S RVTR SR M + A GG V+ N N+ GS D DG+DS+ CP PELSSPLRS +S RDLQVLTPS G G +Y D XXXXX S+ CPTPELSSPLRSAGSAALCRRRLEEAGGD DD +G GPL+ VSEEEYA+A P++L++ V
Sbjct: 29 SDRVTRSPSRAMKPAASKAADGPGGDVDANVNTDWRGSDHDGCGSSDGFDSDACPTPELSSPLRSATVSVRDLQVLTPSAMVNTADGGGHRGGSTYNYD--------XXXXXXSEQCPTPELSSPLRSAGSAALCRRRLEEAGGDGGRGDDDEVAGVGGTSGPLDFVSEEEYARAGGVPRCNSPPRWLSVAV 212
BLAST of mRNA_C-linearis_contig84.16132.1 vs. uniprot
Match: A0A4D9D5B5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5B5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 7.700e-9 Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 3
Query: 2412 PLELVSEEEYAKAPKFLTIQVSRSVLNDTIRNLNAYAAPRL--ATPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEM----KGHRMYRI 2672
P+ V EEE+A+AP F+ IQV+R +LND I+ N++ + L +D++ II QG+LS+T+LLS AHLKR+ M +G R Y+I
Sbjct: 965 PIPEVPEEEFARAPSFIQIQVTREMLNDAIKVFNSHMKGKQHGGKSGVQALPLDQVTEIIAQGDLSKTILLSLAHLKRVGMSMTTQGQRAYKI 1057 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16132.1 >prot_C-linearis_contig84.16132.1 ID=prot_C-linearis_contig84.16132.1|Name=mRNA_C-linearis_contig84.16132.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=881bp MNHAEAFGHLRSFVVGLEVKARDLRKVLESSRDKDGKWVNGKDGTGIGERback to top mRNA from alignment at C-linearis_contig84:691101..698773+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16132.1 ID=mRNA_C-linearis_contig84.16132.1|Name=mRNA_C-linearis_contig84.16132.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7673bp|location=Sequence derived from alignment at C-linearis_contig84:691101..698773+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:691101..698773+ >mRNA_C-linearis_contig84.16132.1 ID=mRNA_C-linearis_contig84.16132.1|Name=mRNA_C-linearis_contig84.16132.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5286bp|location=Sequence derived from alignment at C-linearis_contig84:691101..698773+ (Chordaria linearis ClinC8C monoicous)back to top |