mRNA_C-linearis_contig84.16129.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A6H5JWA0_9PHAE (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWA0_9PHAE) HSP 1 Score: 282 bits (722), Expect = 2.450e-92 Identity = 154/231 (66.67%), Postives = 170/231 (73.59%), Query Frame = 3
Query: 9 MLHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGLSGLEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRRASRRARERPAAG 701
MLHVVLFRPLIPANTGNIGRTCLGFGARLHL+KPLGFDLSEREVKRAGLDHW HVDL VH+SW CFTES LP H++ G NIYLVSKRLKLGSTPIA+V+FF TP P + G G + L + TVG S+ S DVTLVFGNEVDGLSGLEEG +GR+LPAV+LPMRDDVIRSYNL+NAVAMAVYEV RQRR + R R+ G
Sbjct: 1 MLHVVLFRPLIPANTGNIGRTCLGFGARLHLVKPLGFDLSEREVKRAGLDHWEHVDLAVHNSWTCFTESMLPVLSHNNSG---GGGNIYLVSKRLKLGSTPIAEVDFFAPTPKPPPIAAQPG--------GGAGELS-SDTVGSSACSQG-----------DVTLVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSYNLSNAVAMAVYEVDRQRREAPRIRDTGRGG 208
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A2V6T7M5_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6T7M5_9BACT) HSP 1 Score: 113 bits (283), Expect = 3.260e-27 Identity = 85/220 (38.64%), Postives = 103/220 (46.82%), Query Frame = 3
Query: 15 HVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGLSG-LEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRRAS 671
HVVL P I NTGN GRTCL GA LHLI+PLGF L++REVKRAGLD+W H+DL V SW F E LPT G Y S + + RL + +G S+ V LVFG E DGL L E + R V +P+ ++RS NL+ +VA+AVYEV RQRRAS
Sbjct: 4 HVVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLADREVKRAGLDYWEHLDLRVWPSWDAF-EHELPTLGEP-----------YFFSPK--------------------------------------ATRLVWDAPLGASNG---------------VVLVFGRETDGLPAELLERYRDR---LVAMPILSPLVRSLNLSTSVAIAVYEVLRQRRAS 155
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A7W1II99_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1II99_9BACT) HSP 1 Score: 108 bits (270), Expect = 2.550e-25 Identity = 82/219 (37.44%), Postives = 99/219 (45.21%), Query Frame = 3
Query: 15 HVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGLSG-LEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRRA 668
HVVL P I NTGN GRTCL GA LHLI+PLGF L +R++KRAGLD+W HVDL V W F E LPT G Y S + + RL + +G E V LVFG E GL L E + R V +P+ ++RS NLA++VA+AVYEV RQRRA
Sbjct: 4 HVVLVHPEIHGNTGNAGRTCLAAGATLHLIEPLGFSLDDRQLKRAGLDYWAHVDLHVWPGWEAF-ERVLPTLGEP-----------YFFSTK--------------------------------------ATRLLWDAPLGAP---------------ESVVLVFGREAAGLPDVLHERYRDRF---VAMPIVTPIVRSLNLASSVAIAVYEVVRQRRA 154
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: M2Y4W0_GALSU (tRNA/rRNA methyltransferase isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4W0_GALSU) HSP 1 Score: 107 bits (267), Expect = 5.270e-24 Identity = 75/218 (34.40%), Postives = 105/218 (48.17%), Query Frame = 3
Query: 12 LHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGLSGLEEGA--KGRSLPAVFLPMRDD-VIRSYNLANAVAMAVYEVHR 656
++VVLF+P IP NTGNIGRTCL FGA+LHLI PLGF + E V+RAGLD+W +VD W F E +P H IY ++ + G+ + V F T G V L+FG+E +G L A KG S V++PM++ ++RS+NL+NAVA+A++E+H+
Sbjct: 85 INVVLFQPKIPGNTGNIGRTCLAFGAKLHLIGPLGFSIDEHAVRRAGLDYWKYVDWKYSSCWEDF-EKGVPENSH-----------IYFITTQ---GTVSLERVTF--------------------------------KTTG------------------PVFLIFGSETEGFQQLPIKALDKGTS---VYIPMQNKHIVRSHNLSNAVAIALWELHK 234
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A6B2LL55_9EUKA (SpoU_methylase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LL55_9EUKA) HSP 1 Score: 105 bits (263), Expect = 5.380e-24 Identity = 55/107 (51.40%), Postives = 63/107 (58.88%), Query Frame = 3
Query: 9 MLHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNF 329
MLHVVL RP IP NTG+IGRTCL F A+LHL+ PLGF L +VKRAGLD+W HVDL+V+D W F E H YL K GST + D F
Sbjct: 1 MLHVVLVRPQIPTNTGSIGRTCLNFDAKLHLVGPLGFSLDSSKVKRAGLDYWQHVDLSVYDDWEHFEEKNRELLVH----------RFYLS----KFGSTSLLDARF 93
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A521TEG9_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521TEG9_9BACT) HSP 1 Score: 104 bits (260), Expect = 6.790e-24 Identity = 77/219 (35.16%), Postives = 95/219 (43.38%), Query Frame = 3
Query: 12 LHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGL-SGLEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRR 665
+HVVL P I NTGN GRTCL GA LHL++PLGF L +R+VKRAGLD+W HVDL V W F E LP G + +L P+ GE ED L+FG E GL S + E R V +P+ + +RS NL+ +VA+AVYEV RQRR
Sbjct: 1 MHVVLVHPEIHWNTGNAGRTCLAVGATLHLVEPLGFSLDDRQVKRAGLDYWEHVDLRVWPDWGAF-ERALPALGEPW---------FFSTKATRELWDAPL-----------------GES--------------------------------------EDAVLIFGRETGGLPSEVREKYNDR---LVKIPILSEHVRSLNLSTSVALAVYEVMRQRR 151
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A7X7IV97_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7IV97_9BACT) HSP 1 Score: 104 bits (260), Expect = 7.990e-24 Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 3
Query: 12 LHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLP 224
+H+VLF+P IP NTG IGR C+G G LHL++PLGF L+E +VKRAGLD+W+H+DL VHD+W F E+ P
Sbjct: 5 VHIVLFQPEIPHNTGAIGRVCVGLGWPLHLVRPLGFHLAEHQVKRAGLDYWDHLDLRVHDTWAAFLETVRP 75
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A2G4JMF3_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacterium sp. TaxID=1872119 RepID=A0A2G4JMF3_9BACT) HSP 1 Score: 104 bits (259), Expect = 1.030e-23 Identity = 79/220 (35.91%), Postives = 101/220 (45.91%), Query Frame = 3
Query: 12 LHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLKLGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGLSG-LEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRRA 668
+HVVL P I NTGN GRTCL GA LHLI+PLGF L +R+VKRAGLD+W HVDL V +W F E+ LP G FF T + RL + +G + ++ L+FG E GL L E + R V +P+ +RS NL+N+VA+AVYEV RQ+RA
Sbjct: 1 MHVVLVHPDIHWNTGNAGRTCLAAGATLHLIEPLGFSLDDRQVKRAGLDYWEHVDLRVWPNWEAF-EAQLPALGEP-----------------------------FFFST--------------------KATRLLWDAPLGTA---------------QEAVLIFGRETGGLPPELHEQYRDRF---VAMPILSSRVRSLNLSNSVAVAVYEVLRQQRA 152
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: UPI0019C2B4EE (tRNA (Cytidine(34)-2'-O)-methyltransferase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=UPI0019C2B4EE) HSP 1 Score: 104 bits (259), Expect = 1.060e-23 Identity = 79/220 (35.91%), Postives = 95/220 (43.18%), Query Frame = 3
Query: 15 HVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGHSSDGTNTAKSNIYLVSKRLK--LGSTPIADVNFFPRTPPLPGVVPGEGVXXXXXXXGASRRLDLASTVGGSSDSXXXXXXXXGRFVEDVTLVFGNEVDGL-SGLEEGAKGRSLPAVFLPMRDDVIRSYNLANAVAMAVYEVHRQRR 665
HVVL P I NTGN GRTCL GA LHLI+PLGF L EREVKRAGLD+W HVD+ V W F E LP G Y S + P+A N DV L+FG E GL + L E + + V +PM ++RS NL+ +VA+AV+EV RQRR
Sbjct: 5 HVVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLGEREVKRAGLDYWEHVDVRVWPDWETF-ERELPALGVP-----------YFFSTKATQVFWDAPLASDN-------------------------------------------------------DVVLIFGRETGGLPADLHERYRNQF---VTMPMMSPLVRSLNLSTSVAVAVFEVLRQRR 154
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Match: A0A2E7M5F3_9DELT (tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5F3_9DELT) HSP 1 Score: 103 bits (256), Expect = 2.820e-23 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3
Query: 9 MLHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWNHVDLTVHDSWRCFTESTLPTPGH 236
MLHVVL P+IP NTG +GR C+ GARLHL++PLGFD+ E+ V+RAGLD+W +VDL VH W ++ LP P H
Sbjct: 1 MLHVVLVEPVIPQNTGTVGRLCVATGARLHLVEPLGFDIDEKAVRRAGLDYWKNVDLNVHADWEAC-QAALPAPPH 75 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16129.1 >prot_C-linearis_contig84.16129.1 ID=prot_C-linearis_contig84.16129.1|Name=mRNA_C-linearis_contig84.16129.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=236bp MLHVVLFRPLIPANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDback to top mRNA from alignment at C-linearis_contig84:671132..673668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16129.1 ID=mRNA_C-linearis_contig84.16129.1|Name=mRNA_C-linearis_contig84.16129.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2537bp|location=Sequence derived from alignment at C-linearis_contig84:671132..673668+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:671132..673668+ >mRNA_C-linearis_contig84.16129.1 ID=mRNA_C-linearis_contig84.16129.1|Name=mRNA_C-linearis_contig84.16129.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at C-linearis_contig84:671132..673668+ (Chordaria linearis ClinC8C monoicous)back to top |