mRNA_C-linearis_contig84.16115.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: D8LMR1_ECTSI (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR1_ECTSI) HSP 1 Score: 456 bits (1173), Expect = 2.520e-156 Identity = 250/334 (74.85%), Postives = 272/334 (81.44%), Query Frame = 3
Query: 72 MQRLIRRCRCPQQQPSTAVLRPWASV--------IPHGAPTGSNGALSTRAGASEGGRAGXXXXXRRGGETMGVSRRGSSHHNSNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALRG 1049
M RL+ RC CP++ LRPWA++ P+ P+ A ST+AG EG + G T G+ R S H +N+SE+ELEKFRHLEKEWWNP+S+QGAGPLHSMNVTRVQYI RQVG LPEASPH GS TPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHA+GDPLTRTIRYEATTAEELE RGEQFDLV SLEVIEHVE+PA FVSSLA+LTRPGGML +STINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAML A GFP E +ETCGLMYNP SGRWKE+ GDLDVNYI+ ALRG
Sbjct: 1 MHRLLWRCSCPRK------LRPWAALQQTRHTPSFPYSTPS----AHSTQAG--EGVAEDKAGTGQEG--TEGI--RESRHSRANISEEELEKFRHLEKEWWNPASRQGAGPLHSMNVTRVQYIVRQVGSSLPEASPHWGSATPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAQGDPLTRTIRYEATTAEELENRGEQFDLVTSLEVIEHVEDPAGFVSSLASLTRPGGMLAMSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQAHGFPGELVETCGLMYNPVSGRWKENPGDLDVNYIVTALRG 318
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A344PGN4_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus suum TaxID=2259340 RepID=A0A344PGN4_9RHOB) HSP 1 Score: 230 bits (587), Expect = 3.820e-69 Identity = 125/251 (49.80%), Postives = 161/251 (64.14%), Query Frame = 3
Query: 294 NSNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
NS+V + EL+KF + EWW+P+ K PLH MN R+ Y+ Q+ + P AGLR LD+GCGGGLLSE LARLGAEV+G D N+ VA HA L I Y ATTAE L GE FD V +LE+IEHVE PAEFV++ A+L RPGG + +ST+NRT +SFA+AIVGAE++ +P GTHDWR+F+ P +L M+ A G + ++ G+ YNP +G W+ SS D NYI ALR
Sbjct: 2 NSSVDQAELDKFEAMAAEWWDPAGK--FKPLHGMNPVRLDYVTDQIA---QACGRERKGARPFAGLRVLDIGCGGGLLSEPLARLGAEVLGADAVARNIEVARLHAAQMGLE--IDYRATTAEALAAAGEAFDAVLALEIIEHVEGPAEFVATCASLARPGGAVIVSTLNRTPQSFAMAIVGAEWVMRWLPKGTHDWRRFITPAELETMMSAAGL--QPVDQRGMQYNPLTGDWRLSSSDFGCNYIATALR 243
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A1V0GSV7_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=6 Tax=Paracoccus TaxID=265 RepID=A0A1V0GSV7_9RHOB) HSP 1 Score: 227 bits (579), Expect = 6.730e-68 Identity = 119/252 (47.22%), Postives = 162/252 (64.29%), Query Frame = 3
Query: 291 HNSNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
H S++ E+ KF+ + EWW+P K PLH +N TR+ Y+ QV + + + P AGL LD+GCGGGL++E +ARLGA V G D +P N+AVAS HA+G L I Y ATT+E L G ++D+V +LE++EHV +PA FV++ L RPGGML ST+NRTAKSF AI+GAE++ +P GTHDWR+F+ P++LA M A G ++ CG+++NP W S DL VNY M ALR
Sbjct: 6 HTSSIDPAEVAKFQAMAAEWWDPQGK--FKPLHMLNPTRLDYVTAQVAA---QFGRDRDADQPFAGLSVLDIGCGGGLMAEPMARLGATVTGADAAPGNIAVASLHAQGQGLP--IDYRATTSEALSAEGLRYDVVMALEIVEHVADPAAFVATCRDLLRPGGMLIQSTLNRTAKSFGAAIIGAEWIMRWLPKGTHDWRRFITPDELATMTEAAGL--RVVDRCGMVFNPLGWSWSLSPRDLSVNYAMTALR 248
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A419A120_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A419A120_9RHOB) HSP 1 Score: 225 bits (574), Expect = 2.890e-67 Identity = 119/246 (48.37%), Postives = 162/246 (65.85%), Query Frame = 3
Query: 303 VSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIA 1040
+ + E+ KF + EWW+P+ K PLH MN R+ YIA Q+ + E + P AGLR LD+GCGGGL++E +ARLGA+V G D + N+ VA AHA + L I Y ATTAE L GE FD+V +LE++EHV +PA+FV++ AAL RPGG+L LST+NRT +SF AI+GAEY+ G +P GTHDW +F+ P++L A +HA G + G+++NP + W+ S DL VNYIM A
Sbjct: 4 IDQSEIAKFEAMAAEWWDPAGK--FRPLHQMNPLRLDYIADQIAV---EFGRDRRGLRPFAGLRVLDIGCGGGLVAEPMARLGAQVTGADATEVNIGVARAHA--EQLGLEIDYRATTAEALVEAGEGFDVVLALEIVEHVADPADFVATCAALLRPGGLLILSTLNRTIRSFGAAIIGAEYVLGWLPRGTHDWNRFLTPDELTAKVHAAGLILADRK--GMVFNPIARSWRLSDRDLAVNYIMTA 240
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A2H5EZH1_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus zhejiangensis TaxID=1077935 RepID=A0A2H5EZH1_9RHOB) HSP 1 Score: 225 bits (574), Expect = 4.510e-67 Identity = 122/250 (48.80%), Postives = 162/250 (64.80%), Query Frame = 3
Query: 297 SNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
S+V EL KF + EWW+P+ K PLH +N TR+ YI ++G E S P GLR LD+GCGGGLL+E +ARLGAEVVG D N++VAS HA+ L I Y ATTAE L GE+FD V +LE++EHV +PA FV++ AALT+PGG++ +ST+NRT KSF AI+GAE++ +P GTH+W +F+ PE+LA M+ A G P ++ G+++NP W S DL VNYIM R
Sbjct: 16 SSVDPAELAKFEAMAAEWWDPNGK--FKPLHMLNPTRLDYIISRIGA---EFGRDARSLRPFEGLRLLDIGCGGGLLTEPMARLGAEVVGADAVERNISVASLHAEQQGLE--IDYRATTAEALADAGERFDAVLALEIVEHVADPAAFVATCAALTKPGGVMIVSTLNRTPKSFGAAIIGAEWIMRWLPKGTHEWHRFITPEELAGMMAAAGMP--AVDRRGMVFNPIRWDWSLSERDLSVNYIMTGRR 256
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A836CM95_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM95_9STRA) HSP 1 Score: 223 bits (569), Expect = 7.900e-67 Identity = 121/219 (55.25%), Postives = 151/219 (68.95%), Query Frame = 3
Query: 393 MNVTRVQYIARQVGLFLPEASPHKGST-TPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQ--FDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIA 1040
MN R ++IA + H GS PLAG LDVGCGGGLLSESLARLG V G+DPSPENVAVA+ HA GDPLTR I YEA AE+L RGE +DLV +LEV+EHV + + F+ SLAAL +PGG L +STINRT K++ALAI+GAE +AG++PVGTHDW KFV P +L A + + + G+++NP W+ S+ DLDVNYI+ A
Sbjct: 1 MNPVRTRFIAEATA----GDAQHSGSAFKPLAGRTCLDVGCGGGLLSESLARLGGNVKGIDPSPENVAVAAEHALGDPLTRGIAYEAAAAEDLVDRGESGAYDLVCALEVVEHVTDVSAFIGSLAALVKPGGHLVMSTINRTPKAYALAIIGAEVIAGLLPVGTHDWDKFVTPRELMARMRTGNL--QIRRSAGMVFNPLRRSWELSADDLDVNYIICA 213
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A1W6CWW7_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus contaminans TaxID=1945662 RepID=A0A1W6CWW7_9RHOB) HSP 1 Score: 224 bits (571), Expect = 1.220e-66 Identity = 119/251 (47.41%), Postives = 168/251 (66.93%), Query Frame = 3
Query: 297 SNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALRG 1049
S++ + E+ KF+ + EWW+P+ K PLH +N R+ YIA Q+ E + S P GLR LD+GCGGGL++E +ARLGA V G D + N+AVA HA L I Y ATTAE L GE+FD+V +LE++EHV +PA+F+++ A L RPGG+L ST+NRT +SFA AI+GAE++ +P GTHDWR+F+ P++LAAML A G +++ G+++NP + W S+ DL VNY+M A+RG
Sbjct: 7 SSIDDAEVAKFQAMAAEWWDPAGK--FRPLHMLNPVRLDYIAAQIAA---EFGRDRRSLRPFEGLRLLDIGCGGGLVAEPMARLGAGVTGADAAEGNIAVARIHAAQSGLD--IDYRATTAEALLAGGERFDVVLALEIVEHVADPADFIATCARLLRPGGLLVASTLNRTPQSFAAAILGAEWVMRWLPRGTHDWRRFIRPDELAAMLQAAGLGV--VDSAGMVFNPLAWGWSLSARDLSVNYLMTAVRG 248
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A553AYA2_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus sp. M683 TaxID=2594268 RepID=A0A553AYA2_9RHOB) HSP 1 Score: 224 bits (570), Expect = 1.660e-66 Identity = 121/250 (48.40%), Postives = 160/250 (64.00%), Query Frame = 3
Query: 297 SNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
S+V EL KF + EWW+P+ K PLH +N TR+ Y+ ++ + + P GLR LD+GCGGGLLSE +ARLGA++VG D N+AVAS HA+ L I Y ATTAE L GEQFD V +LE++EHV +PA FV++ AAL RP G L +ST+NRT KSFA AI+GAE++ +P GTH+W +F+ PE+LAAM+ A G P ++ G+++NP W S DL VNYIM R
Sbjct: 11 SSVDAAELAKFEAMAAEWWDPNGK--FKPLHMLNPTRLDYVVSRIAA---QFGRDPRAPRPFEGLRLLDIGCGGGLLSEPMARLGADIVGADAVERNIAVASLHAEQQGLK--IDYRATTAEALAEAGEQFDAVLALEIVEHVADPAAFVATCAALARPEGALIISTLNRTPKSFAAAIIGAEWIMRWLPKGTHEWHRFITPEELAAMMSAAGMP--ALDRRGMVFNPIRWDWSLSDRDLSVNYIMTGAR 251
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A3M1JX02_9PROT (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JX02_9PROT) HSP 1 Score: 223 bits (568), Expect = 3.990e-66 Identity = 117/250 (46.80%), Postives = 161/250 (64.40%), Query Frame = 3
Query: 297 SNVSEDELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
S++ DE+ +F L + WW+P+ PLH +N TR+QY+ +++ PLAGL D+GCGGGL++E LARLGA V G+D +P N+ VAS HA+ LT I Y TTAE+L G +FD+V +LE++EHV +PA FV SL L +PGG+L +ST+NRT+K+F +AIVGAEY+ +P GTHDWRKF+ P +LA ++ G GL+YNP +G W S DLDVNY++ A R
Sbjct: 18 SSLDRDEVARFDALAQTWWDPNGPMK--PLHRLNPTRLQYLRQRINQHFAR---RPDDLRPLAGLTVADIGCGGGLVAEPLARLGASVTGIDAAPRNIEVASRHAEAQGLT--IDYRETTAEDLVRSGARFDMVTALEIVEHVADPASFVKSLGQLVKPGGLLIMSTLNRTSKAFLMAIVGAEYVMRWLPRGTHDWRKFLRPSELAELIRDAGLVPH--HQTGLVYNPLAGAWSLSERDLDVNYMVSAHR 258
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Match: A0A3M2DK93_9PROT (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2DK93_9PROT) HSP 1 Score: 223 bits (567), Expect = 6.770e-66 Identity = 120/244 (49.18%), Postives = 156/244 (63.93%), Query Frame = 3
Query: 315 ELEKFRHLEKEWWNPSSKQGAGPLHSMNVTRVQYIARQVGLFLPEASPHKGSTTPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAKGDPLTRTIRYEATTAEELETRGEQFDLVASLEVIEHVENPAEFVSSLAALTRPGGMLTLSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLHAKGFPQEGMETCGLMYNPASGRWKESSGDLDVNYIMIALR 1046
EL KF + EWW+P K PLH +N R+ YI RQ+ E + P AGLR LD+GCGGGLLSE +ARLGAEVVG D + N+ VA+ HA+ L I Y TTAE L GEQFD+V ++EV+EHV +PAEF+++ A L RPGG++ STINRT +SFA AIVGAE++ +P GTHDWRKF+ P++L M+ G ++ G ++NP S RW S DL VNY+ + R
Sbjct: 17 ELAKFEAMAAEWWDPEGK--FKPLHMLNPCRLDYITRQIAA---EFGRSRDDALPFAGLRLLDIGCGGGLLSEPMARLGAEVVGADAAEGNIPVAALHARQSGLE--IDYRHTTAEALAEAGEQFDVVLNMEVVEHVPDPAEFLATCARLVRPGGIMICSTINRTPRSFAAAIVGAEWVMRWLPKGTHDWRKFITPDELRTMIEVAGL--RFLDRKGFVFNPLSWRWSISDRDLGVNYVTTSRR 251 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16115.1 >prot_C-linearis_contig84.16115.1 ID=prot_C-linearis_contig84.16115.1|Name=mRNA_C-linearis_contig84.16115.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=332bp MVSSMQRLIRRCRCPQQQPSTAVLRPWASVIPHGAPTGSNGALSTRAGASback to top mRNA from alignment at C-linearis_contig84:557450..561444- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16115.1 ID=mRNA_C-linearis_contig84.16115.1|Name=mRNA_C-linearis_contig84.16115.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3995bp|location=Sequence derived from alignment at C-linearis_contig84:557450..561444- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:557450..561444- >mRNA_C-linearis_contig84.16115.1 ID=mRNA_C-linearis_contig84.16115.1|Name=mRNA_C-linearis_contig84.16115.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at C-linearis_contig84:557450..561444- (Chordaria linearis ClinC8C monoicous)back to top |