mRNA_C-linearis_contig84.16086.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16086.1
Unique NamemRNA_C-linearis_contig84.16086.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A6H5K2C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C6_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 5.330e-129
Identity = 190/260 (73.08%), Postives = 215/260 (82.69%), Query Frame = 1
Query:   55 VTAAECWPIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSS----------QIPLIVLGAVSGLAGSVLDSLMGAILQGSYYD 804
            +  A+ WP+GRWGVA+V+ASY+   GLKKKSLN+SGA+A F VGLVSLGLSLR GLTLILFYKSSS+LTKVG ++K  LTDDYKEGGQRGA QVLSCSLFATILAV H + TGAGDSLVDFE +PL GALLCAYLGFYACCAGDTWSSELGVLSKTPPRL+T+PW+TVP GTNGGMSL+GTVAS AAG V G GFV FGW+FRL PP    +SS              Q+PL++LG VSGLAGS+LDSLMGA+LQ SY+D
Sbjct:    3 IELAQWWPLGRWGVALVIASYMSVSGLKKKSLNRSGAMAAFFVGLVSLGLSLRFGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTVVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFVCFGWVFRLSPPSPAGHSSPXXXXXXXXXXXXXQLPLVLLGGVSGLAGSILDSLMGAVLQASYFD 262          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: D8LMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW9_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 2.400e-105
Identity = 158/194 (81.44%), Postives = 173/194 (89.18%), Query Frame = 1
Query:   55 VTAAECWPIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTG 636
            +  A+ WP+GRWGVA VLASY+   GLKKKSLN+SGA+A F VGLVSLGLSLRLGLTLILFYKSSS+LTKVG ++K  LTDDYKEGGQRGA QVLSCSLFATILAV H + TGAGDSLVDFES+PL GALLCAYLGFYACCAGDTWSSELGVLSKTPPRL+T+PW+TVP GTNGGMSL+GTVASVAAG V G G
Sbjct:    3 IELAQWWPLGRWGVASVLASYMSVSGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVHHTVVTGAGDSLVDFESDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASVAAGVVMGAG 196          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2V002_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V002_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.340e-90
Identity = 160/284 (56.34%), Postives = 193/284 (67.96%), Query Frame = 1
Query:   79 IGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSL---VDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
            + R G+A+  + Y+ F GLKK+SL++SGA A F VGLVSL +S RLGLTLILFYKSSS+LTKVG KKK  L D +   GQR A QVLSCS  A ++AV+     G  D L   V++ S P    LLCAYLG YACC GDTWSSELGVLS++PP L+T+PWRTVPAGTNGG+S +GT+A+ AAG V G GF+LFGWM   P  G          Q  LI  G + GL GS+LDSLMGA LQ +YYD  +K +  K    S     +  VCG +ILTNEQVN+LSV
Sbjct:   10 VPRCGLALAASLYLVFSGLKKRSLSRSGACAAFFVGLVSLSISARLGLTLILFYKSSSILTKVGQKKKAQLDDHHVTDGQRTATQVLSCSGIACVVAVIMYYLEGE-DMLAMGVNYSSHPTTSFLLCAYLGHYACCNGDTWSSELGVLSRSPPILITQPWRTVPAGTNGGVSTMGTLAAGAAGVVIGAGFLLFGWMQGAPQDG----------QYLLIPFGGMCGLLGSMLDSLMGATLQATYYDREKKCITSKVEGKSSD---VVRVCGYDILTNEQVNLLSV 279          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2RII1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RII1_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.640e-73
Identity = 138/276 (50.00%), Postives = 173/276 (62.68%), Query Frame = 1
Query:   94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
            VA  +A  +G+ GL+KKSL+ SGA A   VG +S   S R GL LI FY+SSS LTK   ++K+ L   YKEGGQR A QV SCSL AT++AVV  +  G  D  VD  + P+  ALLCAYLG YACC GDTW+SELG L    PRLV  PWR VP GTNGGMS LGT AS+A G   G  FV+ G          H  S  + SQ+PLI LGA  G  GS++DS +GA LQ ++Y   ++++V   P+ +     +  + G +IL+NEQVN LSV
Sbjct:    8 VAAAVAGLLGWRGLRKKSLSPSGAAAAVLVGFLSFLASFRFGLVLIAFYQSSSSLTKFQGERKRRLEAGYKEGGQRDAEQVFSCSLLATVMAVVFLLTQGE-DQPVDSAAAPMRSALLCAYLGHYACCNGDTWASELGTLDSGLPRLVLAPWRKVPKGTNGGMSFLGTAASLAGGLFIGLVFVVCG---------PHS-SPGAPSQLPLIALGAAGGFVGSLIDSFLGATLQATFYHREKRIIV---PSSASDNADVDRITGVDILSNEQVNALSV 269          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: K8YV45_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV45_NANGC)

HSP 1 Score: 229 bits (583), Expect = 5.890e-70
Identity = 124/284 (43.66%), Postives = 183/284 (64.44%), Query Frame = 1
Query:   94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWR-TVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIP----LIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGG---LKLVCGRNILTNEQVNILSV 921
            +A + A+ + + GL+K SL+KSGA+A + VG +S+G SLR G  +ILFY+SSS+LT+   + K  L +D+K+GGQR A QVL+CS   T++AV      G  D  ++FE+ PL   LLCAY+G YACC GDTW+SE+G+LS + PRLVT  +R  VP GTNGGMSL GT+AS+A G + GTG  + G++  +P        +S +   P    + V+GA  G  GS+ DS++G + Q ++Y   +K VV+   A      G   ++L+ G ++L+NE VN++S+
Sbjct:   33 MATIFATTLSYRGLRKHSLSKSGALAAWVVGFLSMGASLRFGALMILFYQSSSMLTRYRCETKALLEEDHKQGGQRSAAQVLACSFLGTLIAVAFVFLLGPDDLPLNFEASPLRSRLLCAYVGHYACCNGDTWASEIGILSPSSPRLVTAGFRRVVPRGTNGGMSLTGTLASIAGGALIGTGHSILGFVLGMPD------DASGAGWCPGWFFMTVIGAACGFIGSLSDSILGGLFQATWYCAEKKRVVKHPTAQERQGRGAEQVRLISGLDLLSNEHVNLISI 310          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2U2Q7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U2Q7_9EUKA)

HSP 1 Score: 224 bits (571), Expect = 1.480e-68
Identity = 129/275 (46.91%), Postives = 167/275 (60.73%), Query Frame = 1
Query:   94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
            +A   A  I   G +KKSL+  GA+A   VG ++LG++ R GLTL+LFY SSS LTK+G   K  L + + +  QRGA QVLSCS+   +LA+V+    G+ D  VD+++ P G  LLCAYLGF+ACC GDTW+SELG LSK     +      VP GTNGG+S LGT AS+A GG  G  +V+ G+ F +          SS  Q PL++ G   G  GSVLDS MGA LQ S+     K +V+    P P K     +CG NILTNEQVN++S
Sbjct:   16 IAFCCAGAIARRGYRKKSLSSGGAVAAMLVGGITLGITWRFGLTLLLFYGSSSQLTKIGKHAKDKLEEGHSKESQRGATQVLSCSMTGVVLAIVYASLVGSDDIPVDYDTNPTGSFLLCAYLGFFACCNGDTWASELGTLSKAKSATLITTLSDVPKGTNGGISFLGTAASIAGGGFIGLVYVVVGF-FTVE-------KKSSVPQWPLVLFGMGMGALGSVLDSFMGATLQESWMCRRTKKIVK----PPPMKDTYVKICGMNILTNEQVNLVS 278          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: M4C455_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C455_HYAAE)

HSP 1 Score: 219 bits (559), Expect = 5.980e-67
Identity = 126/281 (44.84%), Postives = 173/281 (61.57%), Query Frame = 1
Query:   76 PIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
            P+ R  VA +LA ++G  GLKK+SL+ SGA A  CVG  +L    R G+ L+ FY S S LTKV +  K+ L  +YK+GGQR A QVL+CSL AT++AV   +  G  D  +DFES P    LL +Y+G YACCA DTW+SELGVLSK+ PRL+   W+ VP GTNGG+S+LG   S   G   G  +     +             S ++Q+ ++ LGAV+GL GS LDS++GA LQ +YYD   + + ++ P        ++ +CGR  L+NEQVN++S
Sbjct:    4 PLSRVLVAALLAGWLGRRGLKKQSLDVSGAAAACCVGFFTLASGYRFGVLLLGFYFSGSKLTKVRASVKQQLDANYKQGGQRSARQVLACSLVATLIAVYFVVRFGHDDVALDFESAPESSFLLASYIGHYACCAADTWASELGVLSKSEPRLI-MTWKRVPPGTNGGVSVLGLAVSALGGAFIGALYFATSLL-------------SGTAQLHVVTLGAVTGLFGSALDSILGATLQATYYDRATRKICDEAPH-------VEHICGRKWLSNEQVNVVS 263          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: R1C669_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C669_EMIHU)

HSP 1 Score: 218 bits (554), Expect = 4.190e-66
Identity = 126/281 (44.84%), Postives = 170/281 (60.50%), Query Frame = 1
Query:   79 IGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFES-EPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
            + R     ++A  +  GGLK+ SL + GA A F VGL+S   S+R G+TL+ FYKS S+LT+VG+  K+ + + Y   GQRGA QVL+CS      AV+ +   G  D+ +DF      G  L  AY+ F+ACCAGDTW+SELGVLS +PPR++T+PWRT PAGTNGG+S+LGT+AS A G   G           LPP G           + L+  G V G+ GS+LDSL+GA +Q +YYDE  +MVV + P P   +     V G  +L+NE VN +S
Sbjct:    5 LARTSAGTLIAYKLATGGLKRGSLQRDGAAAAFVVGLLSFSCSIRCGVTLLFFYKSGSMLTRVGADVKRKVEEGYAAEGQRGAAQVLACSAVGVAAAVLRRALVGP-DAPLDFSDLASAGNRLTLAYVSFFACCAGDTWASELGVLSASPPRIITQPWRTAPAGTNGGVSVLGTLASAAGGACIGACHAAC----LLPPSGREA--------LGLVWAGLVGGVGGSLLDSLLGATVQATYYDEASRMVVGR-PTPKARR-----VAGLPLLSNEMVNFVS 266          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2N4E0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N4E0_9EUKA)

HSP 1 Score: 216 bits (550), Expect = 1.160e-65
Identity = 118/264 (44.70%), Postives = 168/264 (63.64%), Query Frame = 1
Query:  127 GGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
            GG K+ SLN+ GA A F V  ++   SLR G+TL++FYK+ S+LTKVG+  K  L D Y   GQRGA QVL+CS  A   AV  ++  G    +   + + LG  L  A++ F+ACCAGDT++SELG+LS++PPR+VT+PW+  P GTNGG++ LGT+AS   G   G    +F  +  L PP +HE ++       L  +G ++G+ GS+LDSL+GA +Q +YYDE RK++V+K  A +      K V G  +L+NE VN +S
Sbjct:    5 GGYKRGSLNRDGATAAFVVAALAFSCSLRSGMTLLVFYKTGSMLTKVGASVKNKLEDGYAAEGQRGASQVLACSAIAVACAVARRLLVGTDGPIDLADVQCLGNRLTLAFVAFFACCAGDTYASELGILSRSPPRIVTQPWKVAPPGTNGGITALGTLASAGGGVCMGLCHAVF--LGPLLPPSAHECAA-------LTYVGLLAGVGGSILDSLLGATVQATYYDEERKLIVKKQSAAT------KCVSGFPLLSNEMVNFVS 253          
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A1W0A0M5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0M5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.900e-64
Identity = 126/276 (45.65%), Postives = 168/276 (60.87%), Query Frame = 1
Query:   94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
            V +++     + GL+KKSL+KSGAIA F VG  S+G   R G+ L+ FY S S LT     +K  +    KEGGQR A QVL+CSL A I+ V++    G  D+ +D   +P    L   Y+G YACCA DTW+SELGVLS +PP L+T+ W  VP GTNGG+S +GT+AS A G   G  F ++G +F LP        S+S  Q P I  G VSGL GS LDSL+GA +Q ++YD+  K +  +     P     + VCG ++LTNEQVN++SV
Sbjct:    9 VGLLVGFLAAYRGLRKKSLDKSGAIAAFVVGATSMGCGYRFGILLLGFYFSGSKLTTFQENRKAMMDASVKEGGQRSARQVLACSLLACIVCVIYASVVG-DDAQIDPIKQPTATFLWGCYIGHYACCAADTWASELGVLSPSPPVLITKFWIKVPTGTNGGISCVGTLASAAGGAFIGLLFYVYGVIF-LP--------STSVPQWPSITFGLVSGLFGSFLDSLLGATIQATWYDDTTKKIAPRPLKTQPFT--YRHVCGYDVLTNEQVNLVSV 272          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C6_9PHAE5.330e-12973.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW9_ECTSI2.400e-10581.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V002_9STRA1.340e-9056.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RII1_9STRA1.640e-7350.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8YV45_NANGC5.890e-7043.66Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
A0A7S2U2Q7_9EUKA1.480e-6846.91Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
M4C455_HYAAE5.980e-6744.84Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
R1C669_EMIHU4.190e-6644.84Uncharacterized protein (Fragment) n=2 Tax=Emilian... [more]
A0A7S2N4E0_9EUKA1.160e-6544.70Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1W0A0M5_9STRA3.900e-6445.65Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:64723..69747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue1.1e-84
Seed eggNOG ortholog2880.D8LMW9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.PFAM Integral membrane protein DUF92
EggNOG OGsCOG1836@1,KOG4491@2759
Ec32 ortholog descriptionputative transmembrane protein
Ec32 orthologEc-02_003920.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size923
Cds size921
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.1460283-CDS-C-linearis_contig84:64722..648931622930632.1460283-CDS-C-linearis_contig84:64722..64893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 64723..64893 +
1690881169.2722883-CDS-C-linearis_contig84:64722..648931690881169.2722883-CDS-C-linearis_contig84:64722..64893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 64723..64893 +
1622930632.158089-CDS-C-linearis_contig84:65485..656201622930632.158089-CDS-C-linearis_contig84:65485..65620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 65486..65620 +
1690881169.2867723-CDS-C-linearis_contig84:65485..656201690881169.2867723-CDS-C-linearis_contig84:65485..65620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 65486..65620 +
1622930632.1726596-CDS-C-linearis_contig84:65897..660821622930632.1726596-CDS-C-linearis_contig84:65897..66082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 65898..66082 +
1690881169.2968383-CDS-C-linearis_contig84:65897..660821690881169.2968383-CDS-C-linearis_contig84:65897..66082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 65898..66082 +
1622930632.1902916-CDS-C-linearis_contig84:66391..664641622930632.1902916-CDS-C-linearis_contig84:66391..66464Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 66392..66464 +
1690881169.3118532-CDS-C-linearis_contig84:66391..664641690881169.3118532-CDS-C-linearis_contig84:66391..66464Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 66392..66464 +
1622930632.20233-CDS-C-linearis_contig84:68472..685421622930632.20233-CDS-C-linearis_contig84:68472..68542Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 68473..68542 +
1690881169.3241577-CDS-C-linearis_contig84:68472..685421690881169.3241577-CDS-C-linearis_contig84:68472..68542Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 68473..68542 +
1622930632.2183893-CDS-C-linearis_contig84:68965..691371622930632.2183893-CDS-C-linearis_contig84:68965..69137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 68966..69137 +
1690881169.3387735-CDS-C-linearis_contig84:68965..691371690881169.3387735-CDS-C-linearis_contig84:68965..69137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 68966..69137 +
1622930632.2301335-CDS-C-linearis_contig84:69632..697471622930632.2301335-CDS-C-linearis_contig84:69632..69747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 69633..69747 +
1690881169.350132-CDS-C-linearis_contig84:69632..697471690881169.350132-CDS-C-linearis_contig84:69632..69747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 69633..69747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16086.1prot_C-linearis_contig84.16086.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 64723..69747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16086.1

>prot_C-linearis_contig84.16086.1 ID=prot_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=307bp
TVRFRCYPHLLIFLRFTMVTAAECWPIGRWGVAVVLASYIGFGGLKKKSL
NKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDD
YKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLC
AYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTV
ASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLA
GSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNE
QVNILSV
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mRNA from alignment at C-linearis_contig84:64723..69747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16086.1 ID=mRNA_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5025bp|location=Sequence derived from alignment at C-linearis_contig84:64723..69747+ (Chordaria linearis ClinC8C monoicous)
ACGGTCCGCTTTCGCTGTTATCCTCATCTCCTCATCTTTCTCAGGTTTAC CATGGTCACAGCGGCAGAATGTTGGCCTATCGGGCGGTGGGGGGTGGCTG TTGTTCTTGCGAGCTACATTGGCTTCGGCGGCTTGAAGAAAAAGTCGCTC AACAAGAGCGGAGCAATCGCAGTAAGTTTTGAGATATGCGGGTCAATAAA GACGGTGTGCGTTTGGTATTTGCCACAGCGACGCAGCGCAGTAGTAGAGT TGTTCGGCAGCAGCTCCGTGGCTCATGTCCATTATTTTTCCGGACCCATG CCTGATGGTGCTGCTGTAGTTCATGGGTATCCATCATAGCAATGATAAAA CTATTCGCTGGCACGGACAAACGGAGAGATTTCACACCGGCACTAGACTA CTAATACGCCTGTTGTATCGATCAATGTACCGTAGTGTAGAGTGTGTGCA TGATGGGTACTCCCGTACATGCACCCCGGCATCCTTCCTTTCCGGTGGTC TCAGGATATCAGACAAGTCCTAGGACCCGGGAAATCCTCAGAGATCAAAC AACAACCCCGCAAACTCCGACGTCGCAGGCGATAAGCTGACTAGATGTTG GCACGTTCCCACTCCTCCTTCGGCACATACACCGAGGCACAGGTAGACTT TACGCCGGAGTACCCCTTTCCGTCATGATGCACGCGGGGCCTCTGACTGC TGTGACTGATGCCTTTTGTGGCTCTTGATGCTGATGCTTGTGCTGCTGCT CCGAATCGCAAAGGGATTTTGCGTGGGTTTAGTCTCCCTCGGGCTGTCTC TGCGCTTGGGCCTGACGCTCATCCTCTTCTACAAGTCGAGCTCCGTCCTG ACCAAGGTTGGCTCCAAGAAAAAAAAGACGCTCACCGATGACTACAAGGT GAATCGCCACATCACATAAATGATTTTTTATTTGGTTTGCTGGCTTCTTT TCTTTCGTTGAATAGAAAGCAGCGCGTCGTCATATGTAGTATACCGTCGG TGTTGCAGGTGGCTTCTCGACCGAGGGAATGGGCATTTTGTTTCCCGTGC ATCTTATTTTCAGACTTCAGTGCCCCACGCACCCCCAACTCTACAAAAAC GGTACTAGCAACCCTGAAACGCACGCTCAACACCGCGTGTTTTCTTGACC CCGTAATTCTTCTGCCGCGCCCCAGGAGGGAGGCCAACGCGGTGCCGTCC AGGTTCTGTCATGCAGCCTCTTCGCCACCATTCTGGCGGTGGTGCACAAG ATTTTCACCGGCGCCGGGGATAGCCTGGTGGACTTTGAGTCTGAGCCGCT GGGCGGGGCGCTGCTGTGCGCCTACCTCGGGTTCTACGCCTGCTGCGCTG GAGACACTTGGTGAGGGCTGGAACAAACTGCCGGCGCGCTTGGTTTGCGT CTGGGGCATGGTTGTTCGTTTTCGCAAGCTGTCGTGTGGACTAAATCTCC TGGTCGGCGTTGTTTACGGATCTTGCGCGTTCCTTCTCGTTTGTGCAACG GCTGCGGTAGCAGCACGCGCAGCAAGGGCCAAATATTTTGAGGGCCCTTC GAAGCGATGGGCACGAAGCCAGGTACCTTCGTGCATCTTCACCCAGCTTA CAAGATTCGCCTACTTCTTCTCTCTACGCTCTCATGCATCGACCCGTCGG TTCATTGTTTGCGCTCCAGGAGCTCGGAGCTTGGGGTCCTGAGCAAGACA CCGCCTCGACTAGTGACCAGGCCCTGGAGAACCGTTCCAGCCGTGAGTAT TGTTGGTAGCAAGAACAGCGCGCAGTATTGCGCCTATTACTTTTTTCCAG GGTACTCCTCGGGAACGTTTTTTTGGACGGGAACAGTTTGGGCGGTACCT CAACATGACGGAACACTTAGGCGGTAGGCGGTTTCTGTGGTTTTCCCCGG TACCGCCTTCGGCGGTTCCCGGTTCCGCGAATAACGACGGGAATTTCGCG GGCGGTTCGCAACATGGCGGTACCCGGTACCCGGTAACCGGTAACAACGT GACAACGTAGCAACAATATCGGGCGGTTATGTTTCGGCTTTCTTTTGTCA TTTTTTTTCCGGCGGTATCCTAAGCCTATATTAGCTACATTTGGCGTCCA AACAAACGGCAAACCTCTTTCCTGACGATGTCTTTCAAAGAAATGCAAAG CCCTGGATGCAGACTAAGTGACAAATTGACCAGCCTCGTGCAACACGAAA AAGAAAGAAAAACTAAAAATATGAGATGTAGACCAATAGTTTATAAAACA TCAGAACGTAAAAAACTGAAAAACTGAAAAACTGAAAAACTATGATGAGC TACAGGCGCTCCCAAACCAGGTGGCGCAGCTCCTACTACTAGGAGTAGCA CTGAGACTCGCGTCTACACTGCTCATTCTGCTGGACCGCACGCGCTGCGC TGTGGGCAGGGGTGCGTGTGTGCGCCCACTGCGGTGCTGTGGTCCACGCA TCGACTCCAAGAGGTTCTACCGAAAAGGAACCAAAACAAAAAACACTGGC CTACAGCAGCAGTAGAACCAAACCAAAAATAAAAATAAGAGAAGAAAGGA AGAAAAGAAGAAAGGAAAACAAAAAAAAGGTCATTTTTTCGGCGGTACTG AAAGATGCCGGTACTTTTTCGGCGCTACTGAAAGAGGCCGGTACTTTTTG GGCGGGAAACGGTGTTTGGTTTTTAGGCGGTACCGCCTTCGGCGGCACCC GGTTCTGCGAATTAAGACGGGAATTCCGGCAAGTACCGGATCCGCCTAAT AACCCCGGAAAAAAAAACGGGATTATTCCCGAGGAGTACCCTGTTTTTTT CGGTACAGGTCTGCCAGCCTGGCAAGAGTAGCTCGAGCAAGTTTCTTCAA GTGCGTCCGGTTTGCAAGCGTGATGGCATGTTCGCTGAAGCAAAGAAGCA TATCTGCACACCGAAGTCGTTGAAATCGCTAAATTTTAACAACTTTCAAA GTTTTGGGTCATTCTTTGTGAATTTGTTTTGGCTACCCAGCGCCGGTCGC CCCGGTGGCCTAGTGGTTTAACCTCGAACCCACTAGCAGCAAAGTCTAGA GTTCAATTCCAAGCACAGGTGTTTATTTTGCGACTTTGCAGGTGAAAGCG ATAACATAGCTGAAAAAAGCTCGTGAGTACCAAGCTTCGACTTAGCACGT TGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAACCCAAGGCA AGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAAAGAACAAAA AAGCCCCAGTGTTTGCCGCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGT CCAGAAAAATACACTGTACAAGTGTAGTACTCTAAATACACCGCAACTTA TAGTACACGTCTCGCCTTGGTCGGAAAGGGACTGTCGCCAAAATAAATGG GACGAAAACACACACACACACCCAGCACGCTCGTGCAGAGAGCGAAGCAA TGTCTGTTGTGGCACAAACATTTGTTTTTTGGCCGGGCTCTTGCCATTCT CTCTCTCTCTTCCTTTCTGGCTCTCTCTTTATCCCCTGAGGGTTTTCTGC TTAATACGCAAGATGTCGTCGGTTGGGAATTCCCTTGTCCCAACGTAACC CGTTTGGCGAATTGAGGTTTGGCGTTGTGTTTTTCTTGGGTGTGGGTACT TATTTGGATGTACGTCGCGCAGTGCATGCTTCAACCCCCCTTCCGCGTCT GCTTTCTTGTCCCTCGCTGGCGATTGTGACTGACTAACTGACTCGCGCAG GGGACGAACGGAGGGATGTCGCTGCTGGGAACGGTGGCATCTGTGGCCGC CGGTGGTGTGACGGGCACCGGTGCGTGATTTTGGCGCTTACACTTTGTCC AGCCGAGGAAGAGGCGGCGTTTGTTCAGAGGGAGGCCGGGAGAAAAATGC TTACTTATTGGGCTGGAGGCGTTGTTTCGAAGCTGATAGGCTGTTCGCAC AGAGCAAGCTTTCAGCCTTTTGACAACGAGAAAGCCCCGAGTCGAACGGC GTGTCGAAATCTCAAGTTGGTCCGTGCTTGTGCTTGCACAGCAAGGTTTA AGTTCGGCCCTCAAACATAACTACGAAATGTTGGTGCCGGCGCTGCCAAC TGCATCCTTGGTCATCGCGCTAAATTACCTCTGTCCCAAATCACCCCTGT TGTCGCCATTGCCCAGCTCCCGCCCACCTCGGTGCATGCTTGCTATTTTC CTCGTTTTGTCTCTCTTCTCTTTTTTGCTGTTTTCCATTCAAGGTTTTGT GCTTTTCGGTTGGATGTTTCGACTTCCCCCACCCGGCTCCCACGAGTATT CTTCCTCCTCGTCTTCCCAGATTCCCTTAATTGTGCTCGGAGCGGTGAGC GGGCTGGCGGGCTCCGTCCTTGACTCCCTCATGGGGGCCATCCTTCAGGG GTCATACTATGACGAGTGAGGAGCGCCTTGTCGGGTTCTTCCCTGGGTTA TTTGTTTTTGTGCTTCGTTCGTCAAGCTGCATGTCGTTGTGCCGAGGTGC TTTATCACCGTCGGGGGCCTGAGCGATATTGGCGTCTGCGCTTATTTTCG TCTCCCATCTGTGCGCCCGCCTCGTATGGCCTGCCCCTGTTGGTTCGCGG AAAGTGGTTGTTGGCGCTTTGTTGGTGGCTTTAGGCGCGAAGCGCGACAC GTGTCAGCACCACCCCGTTGCGGTCTACAACGATGAATGTCCAAGGAAGA AACACAGCGTTGTTACCCTGCGGGCTTTCCACCCCAATCGGTGTTTGGGT GTCGCTATGCTGCGCGGTGCCGTCGTTCGCTCCTTTTAAGTACTGTAGCT CTGCGCAGGCCTGTCCTTTTCGAAAATGTCAGCCTGTCGCCCCCCACAGC TGATGTTGTTGTGTCCCACTTGTCGTTGATGCTTCGTGGGCCACAAAAAT GGACACGCAGGAACCGCAAGATGGTCGTTGAGAAGACGCCGGCGCCCTCG CCTTCAAAGGGGGGTCTGAAGCTCGTGTGCGGTCGAAATATATTAACCAA CGAGCAAGTCAACATCTTGTCGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig84:64723..69747+

>mRNA_C-linearis_contig84.16086.1 ID=mRNA_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at C-linearis_contig84:64723..69747+ (Chordaria linearis ClinC8C monoicous)
ACGGTCCGCTTTCGCTGTTATCCTCATCTCCTCATCTTTCTCAGGTTTAC
CATGGTCACAGCGGCAGAATGTTGGCCTATCGGGCGGTGGGGGGTGGCTG
TTGTTCTTGCGAGCTACATTGGCTTCGGCGGCTTGAAGAAAAAGTCGCTC
AACAAGAGCGGAGCAATCGCAACGGTCCGCTTTCGCTGTTATCCTCATCT
CCTCATCTTTCTCAGGTTTACCATGGTCACAGCGGCAGAATGTTGGCCTA
TCGGGCGGTGGGGGGTGGCTGTTGTTCTTGCGAGCTACATTGGCTTCGGC
GGCTTGAAGAAAAAGTCGCTCAACAAGAGCGGAGCAATCGCAGGATTTTG
CGTGGGTTTAGTCTCCCTCGGGCTGTCTCTGCGCTTGGGCCTGACGCTCA
TCCTCTTCTACAAGTCGAGCTCCGTCCTGACCAAGGTTGGCTCCAAGAAA
AAAAAGACGCTCACCGATGACTACAAGGGATTTTGCGTGGGTTTAGTCTC
CCTCGGGCTGTCTCTGCGCTTGGGCCTGACGCTCATCCTCTTCTACAAGT
CGAGCTCCGTCCTGACCAAGGTTGGCTCCAAGAAAAAAAAGACGCTCACC
GATGACTACAAGGAGGGAGGCCAACGCGGTGCCGTCCAGGTTCTGTCATG
CAGCCTCTTCGCCACCATTCTGGCGGTGGTGCACAAGATTTTCACCGGCG
CCGGGGATAGCCTGGTGGACTTTGAGTCTGAGCCGCTGGGCGGGGCGCTG
CTGTGCGCCTACCTCGGGTTCTACGCCTGCTGCGCTGGAGACACTTGGAG
GGAGGCCAACGCGGTGCCGTCCAGGTTCTGTCATGCAGCCTCTTCGCCAC
CATTCTGGCGGTGGTGCACAAGATTTTCACCGGCGCCGGGGATAGCCTGG
TGGACTTTGAGTCTGAGCCGCTGGGCGGGGCGCTGCTGTGCGCCTACCTC
GGGTTCTACGCCTGCTGCGCTGGAGACACTTGGAGCTCGGAGCTTGGGGT
CCTGAGCAAGACACCGCCTCGACTAGTGACCAGGCCCTGGAGAACCGTTC
CAGCCGAGCTCGGAGCTTGGGGTCCTGAGCAAGACACCGCCTCGACTAGT
GACCAGGCCCTGGAGAACCGTTCCAGCCGGGACGAACGGAGGGATGTCGC
TGCTGGGAACGGTGGCATCTGTGGCCGCCGGTGGTGTGACGGGCACCGGG
GACGAACGGAGGGATGTCGCTGCTGGGAACGGTGGCATCTGTGGCCGCCG
GTGGTGTGACGGGCACCGGTTTTGTGCTTTTCGGTTGGATGTTTCGACTT
CCCCCACCCGGCTCCCACGAGTATTCTTCCTCCTCGTCTTCCCAGATTCC
CTTAATTGTGCTCGGAGCGGTGAGCGGGCTGGCGGGCTCCGTCCTTGACT
CCCTCATGGGGGCCATCCTTCAGGGGTCATACTATGACGAGTTTTGTGCT
TTTCGGTTGGATGTTTCGACTTCCCCCACCCGGCTCCCACGAGTATTCTT
CCTCCTCGTCTTCCCAGATTCCCTTAATTGTGCTCGGAGCGGTGAGCGGG
CTGGCGGGCTCCGTCCTTGACTCCCTCATGGGGGCCATCCTTCAGGGGTC
ATACTATGACGAGAACCGCAAGATGGTCGTTGAGAAGACGCCGGCGCCCT
CGCCTTCAAAGGGGGGTCTGAAGCTCGTGTGCGGTCGAAATATATTAACC
AACGAGCAAGTCAACATCTTGTCGGTGGAACCGCAAGATGGTCGTTGAGA
AGACGCCGGCGCCCTCGCCTTCAAAGGGGGGTCTGAAGCTCGTGTGCGGT
CGAAATATATTAACCAACGAGCAAGTCAACATCTTGTCGGTG
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