mRNA_C-linearis_contig84.16086.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A6H5K2C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C6_9PHAE) HSP 1 Score: 377 bits (967), Expect = 5.330e-129 Identity = 190/260 (73.08%), Postives = 215/260 (82.69%), Query Frame = 1
Query: 55 VTAAECWPIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSS----------QIPLIVLGAVSGLAGSVLDSLMGAILQGSYYD 804
+ A+ WP+GRWGVA+V+ASY+ GLKKKSLN+SGA+A F VGLVSLGLSLR GLTLILFYKSSS+LTKVG ++K LTDDYKEGGQRGA QVLSCSLFATILAV H + TGAGDSLVDFE +PL GALLCAYLGFYACCAGDTWSSELGVLSKTPPRL+T+PW+TVP GTNGGMSL+GTVAS AAG V G GFV FGW+FRL PP +SS Q+PL++LG VSGLAGS+LDSLMGA+LQ SY+D
Sbjct: 3 IELAQWWPLGRWGVALVIASYMSVSGLKKKSLNRSGAMAAFFVGLVSLGLSLRFGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTVVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFVCFGWVFRLSPPSPAGHSSPXXXXXXXXXXXXXQLPLVLLGGVSGLAGSILDSLMGAVLQASYFD 262
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: D8LMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW9_ECTSI) HSP 1 Score: 314 bits (805), Expect = 2.400e-105 Identity = 158/194 (81.44%), Postives = 173/194 (89.18%), Query Frame = 1
Query: 55 VTAAECWPIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTG 636
+ A+ WP+GRWGVA VLASY+ GLKKKSLN+SGA+A F VGLVSLGLSLRLGLTLILFYKSSS+LTKVG ++K LTDDYKEGGQRGA QVLSCSLFATILAV H + TGAGDSLVDFES+PL GALLCAYLGFYACCAGDTWSSELGVLSKTPPRL+T+PW+TVP GTNGGMSL+GTVASVAAG V G G
Sbjct: 3 IELAQWWPLGRWGVASVLASYMSVSGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVHHTVVTGAGDSLVDFESDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASVAAGVVMGAG 196
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2V002_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V002_9STRA) HSP 1 Score: 280 bits (717), Expect = 1.340e-90 Identity = 160/284 (56.34%), Postives = 193/284 (67.96%), Query Frame = 1
Query: 79 IGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSL---VDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
+ R G+A+ + Y+ F GLKK+SL++SGA A F VGLVSL +S RLGLTLILFYKSSS+LTKVG KKK L D + GQR A QVLSCS A ++AV+ G D L V++ S P LLCAYLG YACC GDTWSSELGVLS++PP L+T+PWRTVPAGTNGG+S +GT+A+ AAG V G GF+LFGWM P G Q LI G + GL GS+LDSLMGA LQ +YYD +K + K S + VCG +ILTNEQVN+LSV
Sbjct: 10 VPRCGLALAASLYLVFSGLKKRSLSRSGACAAFFVGLVSLSISARLGLTLILFYKSSSILTKVGQKKKAQLDDHHVTDGQRTATQVLSCSGIACVVAVIMYYLEGE-DMLAMGVNYSSHPTTSFLLCAYLGHYACCNGDTWSSELGVLSRSPPILITQPWRTVPAGTNGGVSTMGTLAAGAAGVVIGAGFLLFGWMQGAPQDG----------QYLLIPFGGMCGLLGSMLDSLMGATLQATYYDREKKCITSKVEGKSSD---VVRVCGYDILTNEQVNLLSV 279
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2RII1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RII1_9STRA) HSP 1 Score: 236 bits (603), Expect = 1.640e-73 Identity = 138/276 (50.00%), Postives = 173/276 (62.68%), Query Frame = 1
Query: 94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
VA +A +G+ GL+KKSL+ SGA A VG +S S R GL LI FY+SSS LTK ++K+ L YKEGGQR A QV SCSL AT++AVV + G D VD + P+ ALLCAYLG YACC GDTW+SELG L PRLV PWR VP GTNGGMS LGT AS+A G G FV+ G H S + SQ+PLI LGA G GS++DS +GA LQ ++Y ++++V P+ + + + G +IL+NEQVN LSV
Sbjct: 8 VAAAVAGLLGWRGLRKKSLSPSGAAAAVLVGFLSFLASFRFGLVLIAFYQSSSSLTKFQGERKRRLEAGYKEGGQRDAEQVFSCSLLATVMAVVFLLTQGE-DQPVDSAAAPMRSALLCAYLGHYACCNGDTWASELGTLDSGLPRLVLAPWRKVPKGTNGGMSFLGTAASLAGGLFIGLVFVVCG---------PHS-SPGAPSQLPLIALGAAGGFVGSLIDSFLGATLQATFYHREKRIIV---PSSASDNADVDRITGVDILSNEQVNALSV 269
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: K8YV45_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV45_NANGC) HSP 1 Score: 229 bits (583), Expect = 5.890e-70 Identity = 124/284 (43.66%), Postives = 183/284 (64.44%), Query Frame = 1
Query: 94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWR-TVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIP----LIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGG---LKLVCGRNILTNEQVNILSV 921
+A + A+ + + GL+K SL+KSGA+A + VG +S+G SLR G +ILFY+SSS+LT+ + K L +D+K+GGQR A QVL+CS T++AV G D ++FE+ PL LLCAY+G YACC GDTW+SE+G+LS + PRLVT +R VP GTNGGMSL GT+AS+A G + GTG + G++ +P +S + P + V+GA G GS+ DS++G + Q ++Y +K VV+ A G ++L+ G ++L+NE VN++S+
Sbjct: 33 MATIFATTLSYRGLRKHSLSKSGALAAWVVGFLSMGASLRFGALMILFYQSSSMLTRYRCETKALLEEDHKQGGQRSAAQVLACSFLGTLIAVAFVFLLGPDDLPLNFEASPLRSRLLCAYVGHYACCNGDTWASEIGILSPSSPRLVTAGFRRVVPRGTNGGMSLTGTLASIAGGALIGTGHSILGFVLGMPD------DASGAGWCPGWFFMTVIGAACGFIGSLSDSILGGLFQATWYCAEKKRVVKHPTAQERQGRGAEQVRLISGLDLLSNEHVNLISI 310
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2U2Q7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U2Q7_9EUKA) HSP 1 Score: 224 bits (571), Expect = 1.480e-68 Identity = 129/275 (46.91%), Postives = 167/275 (60.73%), Query Frame = 1
Query: 94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
+A A I G +KKSL+ GA+A VG ++LG++ R GLTL+LFY SSS LTK+G K L + + + QRGA QVLSCS+ +LA+V+ G+ D VD+++ P G LLCAYLGF+ACC GDTW+SELG LSK + VP GTNGG+S LGT AS+A GG G +V+ G+ F + SS Q PL++ G G GSVLDS MGA LQ S+ K +V+ P P K +CG NILTNEQVN++S
Sbjct: 16 IAFCCAGAIARRGYRKKSLSSGGAVAAMLVGGITLGITWRFGLTLLLFYGSSSQLTKIGKHAKDKLEEGHSKESQRGATQVLSCSMTGVVLAIVYASLVGSDDIPVDYDTNPTGSFLLCAYLGFFACCNGDTWASELGTLSKAKSATLITTLSDVPKGTNGGISFLGTAASIAGGGFIGLVYVVVGF-FTVE-------KKSSVPQWPLVLFGMGMGALGSVLDSFMGATLQESWMCRRTKKIVK----PPPMKDTYVKICGMNILTNEQVNLVS 278
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: M4C455_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C455_HYAAE) HSP 1 Score: 219 bits (559), Expect = 5.980e-67 Identity = 126/281 (44.84%), Postives = 173/281 (61.57%), Query Frame = 1
Query: 76 PIGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
P+ R VA +LA ++G GLKK+SL+ SGA A CVG +L R G+ L+ FY S S LTKV + K+ L +YK+GGQR A QVL+CSL AT++AV + G D +DFES P LL +Y+G YACCA DTW+SELGVLSK+ PRL+ W+ VP GTNGG+S+LG S G G + + S ++Q+ ++ LGAV+GL GS LDS++GA LQ +YYD + + ++ P ++ +CGR L+NEQVN++S
Sbjct: 4 PLSRVLVAALLAGWLGRRGLKKQSLDVSGAAAACCVGFFTLASGYRFGVLLLGFYFSGSKLTKVRASVKQQLDANYKQGGQRSARQVLACSLVATLIAVYFVVRFGHDDVALDFESAPESSFLLASYIGHYACCAADTWASELGVLSKSEPRLI-MTWKRVPPGTNGGVSVLGLAVSALGGAFIGALYFATSLL-------------SGTAQLHVVTLGAVTGLFGSALDSILGATLQATYYDRATRKICDEAPH-------VEHICGRKWLSNEQVNVVS 263
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: R1C669_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C669_EMIHU) HSP 1 Score: 218 bits (554), Expect = 4.190e-66 Identity = 126/281 (44.84%), Postives = 170/281 (60.50%), Query Frame = 1
Query: 79 IGRWGVAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFES-EPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
+ R ++A + GGLK+ SL + GA A F VGL+S S+R G+TL+ FYKS S+LT+VG+ K+ + + Y GQRGA QVL+CS AV+ + G D+ +DF G L AY+ F+ACCAGDTW+SELGVLS +PPR++T+PWRT PAGTNGG+S+LGT+AS A G G LPP G + L+ G V G+ GS+LDSL+GA +Q +YYDE +MVV + P P + V G +L+NE VN +S
Sbjct: 5 LARTSAGTLIAYKLATGGLKRGSLQRDGAAAAFVVGLLSFSCSIRCGVTLLFFYKSGSMLTRVGADVKRKVEEGYAAEGQRGAAQVLACSAVGVAAAVLRRALVGP-DAPLDFSDLASAGNRLTLAYVSFFACCAGDTWASELGVLSASPPRIITQPWRTAPAGTNGGVSVLGTLASAAGGACIGACHAAC----LLPPSGREA--------LGLVWAGLVGGVGGSLLDSLLGATVQATYYDEASRMVVGR-PTPKARR-----VAGLPLLSNEMVNFVS 266
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A7S2N4E0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N4E0_9EUKA) HSP 1 Score: 216 bits (550), Expect = 1.160e-65 Identity = 118/264 (44.70%), Postives = 168/264 (63.64%), Query Frame = 1
Query: 127 GGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILS 918
GG K+ SLN+ GA A F V ++ SLR G+TL++FYK+ S+LTKVG+ K L D Y GQRGA QVL+CS A AV ++ G + + + LG L A++ F+ACCAGDT++SELG+LS++PPR+VT+PW+ P GTNGG++ LGT+AS G G +F + L PP +HE ++ L +G ++G+ GS+LDSL+GA +Q +YYDE RK++V+K A + K V G +L+NE VN +S
Sbjct: 5 GGYKRGSLNRDGATAAFVVAALAFSCSLRSGMTLLVFYKTGSMLTKVGASVKNKLEDGYAAEGQRGASQVLACSAIAVACAVARRLLVGTDGPIDLADVQCLGNRLTLAFVAFFACCAGDTYASELGILSRSPPRIVTQPWKVAPPGTNGGITALGTLASAGGGVCMGLCHAVF--LGPLLPPSAHECAA-------LTYVGLLAGVGGSILDSLLGATVQATYYDEERKLIVKKQSAAT------KCVSGFPLLSNEMVNFVS 253
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Match: A0A1W0A0M5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0M5_9STRA) HSP 1 Score: 213 bits (541), Expect = 3.900e-64 Identity = 126/276 (45.65%), Postives = 168/276 (60.87%), Query Frame = 1
Query: 94 VAVVLASYIGFGGLKKKSLNKSGAIAGFCVGLVSLGLSLRLGLTLILFYKSSSVLTKVGSKKKKTLTDDYKEGGQRGAVQVLSCSLFATILAVVHKIFTGAGDSLVDFESEPLGGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLVTRPWRTVPAGTNGGMSLLGTVASVAAGGVTGTGFVLFGWMFRLPPPGSHEYSSSSSSQIPLIVLGAVSGLAGSVLDSLMGAILQGSYYDENRKMVVEKTPAPSPSKGGLKLVCGRNILTNEQVNILSV 921
V +++ + GL+KKSL+KSGAIA F VG S+G R G+ L+ FY S S LT +K + KEGGQR A QVL+CSL A I+ V++ G D+ +D +P L Y+G YACCA DTW+SELGVLS +PP L+T+ W VP GTNGG+S +GT+AS A G G F ++G +F LP S+S Q P I G VSGL GS LDSL+GA +Q ++YD+ K + + P + VCG ++LTNEQVN++SV
Sbjct: 9 VGLLVGFLAAYRGLRKKSLDKSGAIAAFVVGATSMGCGYRFGILLLGFYFSGSKLTTFQENRKAMMDASVKEGGQRSARQVLACSLLACIVCVIYASVVG-DDAQIDPIKQPTATFLWGCYIGHYACCAADTWASELGVLSPSPPVLITKFWIKVPTGTNGGISCVGTLASAAGGAFIGLLFYVYGVIF-LP--------STSVPQWPSITFGLVSGLFGSFLDSLLGATIQATWYDDTTKKIAPRPLKTQPFT--YRHVCGYDVLTNEQVNLVSV 272 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16086.1 >prot_C-linearis_contig84.16086.1 ID=prot_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=307bp TVRFRCYPHLLIFLRFTMVTAAECWPIGRWGVAVVLASYIGFGGLKKKSLback to top mRNA from alignment at C-linearis_contig84:64723..69747+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16086.1 ID=mRNA_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5025bp|location=Sequence derived from alignment at C-linearis_contig84:64723..69747+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:64723..69747+ >mRNA_C-linearis_contig84.16086.1 ID=mRNA_C-linearis_contig84.16086.1|Name=mRNA_C-linearis_contig84.16086.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at C-linearis_contig84:64723..69747+ (Chordaria linearis ClinC8C monoicous)back to top |