mRNA_C-linearis_contig84.16083.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16083.1
Unique NamemRNA_C-linearis_contig84.16083.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:17167..17675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16083.1prot_C-linearis_contig84.16083.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 17188..17675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.9695141-UTR-C-linearis_contig84:17166..171871622930629.9695141-UTR-C-linearis_contig84:17166..17187Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 17167..17187 +
1690881168.148853-UTR-C-linearis_contig84:17166..171871690881168.148853-UTR-C-linearis_contig84:17166..17187Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 17167..17187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.9957893-CDS-C-linearis_contig84:17187..172941622930629.9957893-CDS-C-linearis_contig84:17187..17294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 17188..17294 +
1690881168.159405-CDS-C-linearis_contig84:17187..172941690881168.159405-CDS-C-linearis_contig84:17187..17294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 17188..17294 +
1622930630.0084305-CDS-C-linearis_contig84:17530..176751622930630.0084305-CDS-C-linearis_contig84:17530..17675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 17531..17675 +
1690881168.1779423-CDS-C-linearis_contig84:17530..176751690881168.1779423-CDS-C-linearis_contig84:17530..17675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 17531..17675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16083.1

>prot_C-linearis_contig84.16083.1 ID=prot_C-linearis_contig84.16083.1|Name=mRNA_C-linearis_contig84.16083.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
MQRHLEGKSGRAPQSHMDVNVYDRNGKQCFVVKDCDFDVALMYQWKTFVL
LTLRQQEADDAARVERQAAALKRTQHSHQGGAAE
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mRNA from alignment at C-linearis_contig84:17167..17675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16083.1 ID=mRNA_C-linearis_contig84.16083.1|Name=mRNA_C-linearis_contig84.16083.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at C-linearis_contig84:17167..17675+ (Chordaria linearis ClinC8C monoicous)
AGGGATGTAGCGCAGAAGCTGATGCAGAGGCACTTGGAGGGAAAGTCAGG
TCGAGCGCCCCAATCCCACATGGACGTTAACGTATACGACCGTAACGGGA
AACAATGCTTCGTCGTCAAAGACTGCGAGTGAGTGGGTGCGACAGTCGAT
CGGTAGGAGGGGGGGGGAAATGTATTACACGTAGTACGTGCTGAATCTTG
CTGAAAACGAAAGCAGGTCGAGATTACAACAAAAAATACATCTTGTTTTC
TGTGCGCGCTAGTTTAAAATTGGTCTACAAACCACCCCTCCTCTACTGAC
CGCGCGACTTGACCATCTGCTGGCCCTCGTCGTTCCCGTGTTTCTCCCTG
CGCATGACGTGCAGCTTTGATGTCGCCCTAATGTACCAGTGGAAAACCTT
CGTGCTACTGACCCTCCGCCAGCAGGAGGCGGACGACGCCGCCAGGGTGG
AGCGGCAAGCGGCGGCATTGAAGCGGACTCAGCATTCCCATCAGGGAGGA
GCAGCGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig84:17167..17675+

>mRNA_C-linearis_contig84.16083.1 ID=mRNA_C-linearis_contig84.16083.1|Name=mRNA_C-linearis_contig84.16083.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig84:17167..17675+ (Chordaria linearis ClinC8C monoicous)
ATGCAGAGGCACTTGGAGGGAAAGTCAGGTCGAGCGCCCCAATCCCACAT
GGACGTTAACGTATACGACCGTAACGGGAAACAATGCTTCGTCGTCAAAG
ACTGCGAATGCAGAGGCACTTGGAGGGAAAGTCAGGTCGAGCGCCCCAAT
CCCACATGGACGTTAACGTATACGACCGTAACGGGAAACAATGCTTCGTC
GTCAAAGACTGCGACTTTGATGTCGCCCTAATGTACCAGTGGAAAACCTT
CGTGCTACTGACCCTCCGCCAGCAGGAGGCGGACGACGCCGCCAGGGTGG
AGCGGCAAGCGGCGGCATTGAAGCGGACTCAGCATTCCCATCAGGGAGGA
GCAGCGGAGCTTTGATGTCGCCCTAATGTACCAGTGGAAAACCTTCGTGC
TACTGACCCTCCGCCAGCAGGAGGCGGACGACGCCGCCAGGGTGGAGCGG
CAAGCGGCGGCATTGAAGCGGACTCAGCATTCCCATCAGGGAGGAGCAGC
GGAG
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