mRNA_C-linearis_contig83.16079.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL9_9PHAE) HSP 1 Score: 212 bits (539), Expect = 5.730e-58 Identity = 141/379 (37.20%), Postives = 201/379 (53.03%), Query Frame = 3
Query: 498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK-------RDQLK--IISTTGGSKEASKISSSVVQVGDKILSEQEKEVAFNLSKLSARTFGYLDGGALRGCIKQCGGDGMTLTKLDVEELRDIIRKLCPGIGED 1589
DS+R AAF+ R P ++ FL D TA+ + + R L V+NL+D+ T + V+ +RV YPT ++LD DR+ V+++++GW+LS AL+ V R G +F FV SH+Y+ A F+ HP +GLE EV RNV W G L+ A FFEFVYTLE GY HALK P L AT+ G+ ++I VVSSAT V+ A+ CV ++ +EAG + LF+F +LKWH R+ ++ K+LS K ++ K SA K RD+LK + TG E K ++ E++K V + R F L G L IK CGG + + +LR ++R + PG GED
Sbjct: 92 DSRRVAAFSSQRRLVRPRMMQEFLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYELDQDRREVVYFLSGWLLSSALSHVTSHKRDGPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGVVMRSYGVLFDFFLLKWHNMRMADYAKKLSNAQKVVEQRKDKSAEKGGDKGALRDRLKSMVNKKTGVRTETRKPTTP----------ERQKRVDL-ADSIGFRDFMRLTKGELASRIKACGG--VVSGRERQYDLRSMLRAIAPGEGED 451
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5JWF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF8_9PHAE) HSP 1 Score: 198 bits (504), Expect = 4.010e-54 Identity = 133/360 (36.94%), Postives = 191/360 (53.06%), Query Frame = 3
Query: 555 LRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK-------RDQLK--IISTTGGSKEASKISSSVVQVGDKILSEQEKEVAFNLSKLSARTFGYLDGGALRGCIKQCGGDGMTLTKLDVEELRDIIRKLCPGIGED 1589
++ FL D TA+ + + R L V+NL+D+ T + V+ +RV YPT +DL DR+ V+++++GW+LS AL+ V R R +F FV SH+Y+ A F+ HP +GLE EV RNV W G L+ A FFEFVYTLE GY HALK P L AT+ G+ ++I VVSSAT V+ A+ CV ++ +EAG + LF+F +LKWH R+ ++ K+LS K K+ K SA K R++LK + TG E K ++ E++K V + +R F L G L IK CGG + + LR ++R + PG+GED
Sbjct: 2 MQEFLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYDLAQDRREVVYFLSGWLLSSALSHVTRHKRDCPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGVVMRSYGVLFDFFLLKWHNMRMADYVKKLSNAQKVVKQRKDKSAEKGGDKGALRERLKSMVNKKTGVRTETRKPTTP----------ERQKRVDL-ADSIGSRDFMRLTKGELGSRIKACGG--VVSGRERQYGLRSMLRAIAPGVGED 342
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5K2P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P3_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.810e-32 Identity = 96/276 (34.78%), Postives = 131/276 (47.46%), Query Frame = 3
Query: 498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK 1307
DS+R AAF+ R P ++ FL D TA+ + + R L V+NL+D+ T + V+ +RV YPT TR H+Y+ A F+ HP +GLE EV RNV W G L+VA FFEFVYTLE GY HALK P L AT+ G+ ++I VVSSAT V+ A+ CV ++ +EAG + LF+ +LKWH + ++ K+LS K K+ K SA K
Sbjct: 37 DSRRVAAFSSQRRLVRPRMMQEFLRDDRTYATAVTLVKHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPT-------------------------TR-----------------HQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIVADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGIVMRSYGVLFDLNILKWHNMLMADYAKKLSNAQKVVKQRKDKSAEK 264
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.450e-29 Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 3
Query: 501 SKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGD-KRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLA 1052
SKRA A+ R + F + S AL++ D +R L+ V+ ID+V T+ + V+V YP DLD ++ +++ +AGW+LS AL+RV R LGS+FLPF SH+ +A+ F A+P GLEF V +RN W GKGL+ AS FF FV LE GY +L NP LLA
Sbjct: 82 SKRALAYEKKREEERFPKQEEFSSEPSIVRKALELGVDSRRVAHKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLA 266
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.780e-28 Identity = 79/236 (33.47%), Postives = 127/236 (53.81%), Query Frame = 3
Query: 642 VYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKA-FIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQ--VVQGGFVVPEEAGGKFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAKRDQLKIISTTG 1340
+ N++D+ VF K E + V +TYPT + + R V++Y+AGW+LS A +R KR + F+ H + + A I P + + EV RN +G GLL ++ ++EFV+ +E G +H L++P L T+LG+ ++EI RVV+ ++ VR AWA C V F E D+++ F++ K+H R+G+F +RLS+ S + G A R L+ S G
Sbjct: 102 IINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSR-KRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPFEAQPEI---LDDIYKFVLQKFHNVRMGDFARRLSQNSTLR--LSKGELALRQNLRATSAKG 331
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.220e-19 Identity = 67/213 (31.46%), Postives = 104/213 (48.83%), Query Frame = 3
Query: 498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGDKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADR-NVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASC 1133
D+K A AFT AR PGRL++++ E + K+ LS + N + Q + + + ++V YP+ + + R V++Y+ GWM S A T +R L + V + Y +++ A G EV DR N HG LL ++ + EFV+ LE G H LK+P+ L FL +F +EIF+VV V++ W C
Sbjct: 179 DTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRN-LSPDWYRIVEHNTYQSSE-MAKARDPMIGQFAEVVDRKNDLKHGPRLLYPTMQWVEFVFALETGDFHFLKDPMYLGAFLWDFPAEIFKVVGEEEYVKDMWRKC 389
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 8.480e-18 Identity = 68/214 (31.78%), Postives = 107/214 (50.00%), Query Frame = 3
Query: 498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGDKRFERCLSGVYNLIDQVTLA--VFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASC 1133
D+ AAAFT AR GRL +++ E + +++ LS + N +++V + V +A E R + P+ + + R V++Y+AGW S ALT R L ++ V + +++ I + V +N +G GLL ++ + EFVY +ERG H LKNP+ LA LG +EIF+VVS A V+E W +C
Sbjct: 96 DTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALV-PSERYQISRPRGQVLYYIAGWAASKALTHQARHN-LSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNC 307 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16079.1 >prot_C-linearis_contig83.16079.1 ID=prot_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp MAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFback to top mRNA from alignment at C-linearis_contig83:775902..778371- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16079.1 ID=mRNA_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2470bp|location=Sequence derived from alignment at C-linearis_contig83:775902..778371- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:775902..778371- >mRNA_C-linearis_contig83.16079.1 ID=mRNA_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig83:775902..778371- (Chordaria linearis ClinC8C monoicous)back to top |