mRNA_C-linearis_contig83.16079.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16079.1
Unique NamemRNA_C-linearis_contig83.16079.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL9_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 5.730e-58
Identity = 141/379 (37.20%), Postives = 201/379 (53.03%), Query Frame = 3
Query:  498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK-------RDQLK--IISTTGGSKEASKISSSVVQVGDKILSEQEKEVAFNLSKLSARTFGYLDGGALRGCIKQCGGDGMTLTKLDVEELRDIIRKLCPGIGED 1589
            DS+R AAF+  R    P  ++ FL D     TA+ +   +    R L  V+NL+D+ T       +  V+ +RV YPT  ++LD DR+ V+++++GW+LS AL+ V    R G +F  FV SH+Y+ A  F+  HP  +GLE EV  RNV W G  L+ A   FFEFVYTLE GY HALK P L AT+ G+  ++I  VVSSAT V+ A+  CV  ++      +EAG       +  LF+F +LKWH  R+ ++ K+LS   K  ++ K  SA K       RD+LK  +   TG   E  K ++           E++K V      +  R F  L  G L   IK CGG  +   +    +LR ++R + PG GED
Sbjct:   92 DSRRVAAFSSQRRLVRPRMMQEFLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYELDQDRREVVYFLSGWLLSSALSHVTSHKRDGPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGVVMRSYGVLFDFFLLKWHNMRMADYAKKLSNAQKVVEQRKDKSAEKGGDKGALRDRLKSMVNKKTGVRTETRKPTTP----------ERQKRVDL-ADSIGFRDFMRLTKGELASRIKACGG--VVSGRERQYDLRSMLRAIAPGEGED 451          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5JWF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF8_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.010e-54
Identity = 133/360 (36.94%), Postives = 191/360 (53.06%), Query Frame = 3
Query:  555 LRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK-------RDQLK--IISTTGGSKEASKISSSVVQVGDKILSEQEKEVAFNLSKLSARTFGYLDGGALRGCIKQCGGDGMTLTKLDVEELRDIIRKLCPGIGED 1589
            ++ FL D     TA+ +   +    R L  V+NL+D+ T       +  V+ +RV YPT  +DL  DR+ V+++++GW+LS AL+ V R  R   +F  FV SH+Y+ A  F+  HP  +GLE EV  RNV W G  L+ A   FFEFVYTLE GY HALK P L AT+ G+  ++I  VVSSAT V+ A+  CV  ++      +EAG       +  LF+F +LKWH  R+ ++ K+LS   K  K+ K  SA K       R++LK  +   TG   E  K ++           E++K V      + +R F  L  G L   IK CGG  +   +     LR ++R + PG+GED
Sbjct:    2 MQEFLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYDLAQDRREVVYFLSGWLLSSALSHVTRHKRDCPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGVVMRSYGVLFDFFLLKWHNMRMADYVKKLSNAQKVVKQRKDKSAEKGGDKGALRERLKSMVNKKTGVRTETRKPTTP----------ERQKRVDL-ADSIGSRDFMRLTKGELGSRIKACGG--VVSGRERQYGLRSMLRAIAPGVGED 342          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5K2P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.810e-32
Identity = 96/276 (34.78%), Postives = 131/276 (47.46%), Query Frame = 3
Query:  498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAG-DKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGG-----KFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAK 1307
            DS+R AAF+  R    P  ++ FL D     TA+ +   +    R L  V+NL+D+ T       +  V+ +RV YPT                         TR                 H+Y+ A  F+  HP  +GLE EV  RNV W G  L+VA   FFEFVYTLE GY HALK P L AT+ G+  ++I  VVSSAT V+ A+  CV  ++      +EAG       +  LF+  +LKWH   + ++ K+LS   K  K+ K  SA K
Sbjct:   37 DSRRVAAFSSQRRLVRPRMMQEFLRDDRTYATAVTLVKHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPT-------------------------TR-----------------HQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIVADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIR------KEAGKGIVMRSYGVLFDLNILKWHNMLMADYAKKLSNAQKVVKQRKDKSAEK 264          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.450e-29
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 3
Query:  501 SKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGD-KRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLA 1052
            SKRA A+   R      +   F  + S    AL++  D +R    L+ V+  ID+V     T+  +    V+V YP    DLD  ++ +++ +AGW+LS AL+RV R   LGS+FLPF  SH+  +A+ F  A+P   GLEF V +RN  W GKGL+ AS  FF FV  LE GY  +L NP LLA
Sbjct:   82 SKRALAYEKKREEERFPKQEEFSSEPSIVRKALELGVDSRRVAHKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLA 266          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.780e-28
Identity = 79/236 (33.47%), Postives = 127/236 (53.81%), Query Frame = 3
Query:  642 VYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKA-FIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASCVQ--VVQGGFVVPEEAGGKFDELFNFMMLKWHRCRIGEFTKRLSKVSKSQKEAKAGSAAKRDQLKIISTTG 1340
            + N++D+    VF K  E  + V +TYPT +  +   R  V++Y+AGW+LS A +R KR   +      F+  H +  + A  I   P  + +  EV  RN   +G GLL  ++ ++EFV+ +E G +H L++P  L T+LG+ ++EI RVV+ ++ VR AWA C    V    F    E     D+++ F++ K+H  R+G+F +RLS+ S  +     G  A R  L+  S  G
Sbjct:  102 IINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSR-KRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPFEAQPEI---LDDIYKFVLQKFHNVRMGDFARRLSQNSTLR--LSKGELALRQNLRATSAKG 331          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.220e-19
Identity = 67/213 (31.46%), Postives = 104/213 (48.83%), Query Frame = 3
Query:  498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGDKRFERCLSGVYNLIDQVTLAVFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADR-NVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASC 1133
            D+K A AFT AR    PGRL++++      E    +   K+    LS + N + Q       +  +  + ++V YP+  + +   R  V++Y+ GWM S A T  +R   L   +   V  + Y +++    A     G   EV DR N   HG  LL  ++ + EFV+ LE G  H LK+P+ L  FL +F +EIF+VV     V++ W  C
Sbjct:  179 DTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRN-LSPDWYRIVEHNTYQSSE-MAKARDPMIGQFAEVVDRKNDLKHGPRLLYPTMQWVEFVFALETGDFHFLKDPMYLGAFLWDFPAEIFKVVGEEEYVKDMWRKC 389          
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.480e-18
Identity = 68/214 (31.78%), Postives = 107/214 (50.00%), Query Frame = 3
Query:  498 DSKRAAAFTFARLRTHPGRLRSFLGDTSNRETALDIAGDKRFERCLSGVYNLIDQVTLA--VFTKALEDVSRVRVTYPTLVFDLDADRQNVIFYMAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEFEVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFTSEIFRVVSSATAVREAWASC 1133
            D+  AAAFT AR     GRL +++      E    +  +++    LS + N +++V +   V  +A E   R  +  P+  + +   R  V++Y+AGW  S ALT   R   L   ++  V  +   +++  I  +         V  +N   +G GLL  ++ + EFVY +ERG  H LKNP+ LA  LG   +EIF+VVS A  V+E W +C
Sbjct:   96 DTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALV-PSERYQISRPRGQVLYYIAGWAASKALTHQARHN-LSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNC 307          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KPL9_9PHAE5.730e-5837.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF8_9PHAE4.010e-5436.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P3_9PHAE1.810e-3234.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLR4_9PHAE1.450e-2941.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE2.780e-2833.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR5_9PHAE2.220e-1931.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE8.480e-1831.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:775902..778371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons5
Model size1906
Cds size849
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.245038-UTR-C-linearis_contig83:775901..7761851622930629.245038-UTR-C-linearis_contig83:775901..776185Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 775902..776185 -
1690881167.7885635-UTR-C-linearis_contig83:775901..7761851690881167.7885635-UTR-C-linearis_contig83:775901..776185Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 775902..776185 -
1622930629.2737408-UTR-C-linearis_contig83:777034..7771451622930629.2737408-UTR-C-linearis_contig83:777034..777145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777035..777145 -
1690881167.8113194-UTR-C-linearis_contig83:777034..7771451690881167.8113194-UTR-C-linearis_contig83:777034..777145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777035..777145 -
1622930629.286276-UTR-C-linearis_contig83:777386..7775681622930629.286276-UTR-C-linearis_contig83:777386..777568Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777387..777568 -
1690881167.8199067-UTR-C-linearis_contig83:777386..7775681690881167.8199067-UTR-C-linearis_contig83:777386..777568Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777387..777568 -
1622930629.3060493-UTR-C-linearis_contig83:777613..7777721622930629.3060493-UTR-C-linearis_contig83:777613..777772Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777614..777772 -
1690881167.8301227-UTR-C-linearis_contig83:777613..7777721690881167.8301227-UTR-C-linearis_contig83:777613..777772Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777614..777772 -
1622930629.321565-UTR-C-linearis_contig83:777912..7780571622930629.321565-UTR-C-linearis_contig83:777912..778057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777913..778057 -
1690881167.8383813-UTR-C-linearis_contig83:777912..7780571690881167.8383813-UTR-C-linearis_contig83:777912..778057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 777913..778057 -
1622930629.3378487-UTR-C-linearis_contig83:778195..7783711622930629.3378487-UTR-C-linearis_contig83:778195..778371Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 778196..778371 -
1690881167.8466291-UTR-C-linearis_contig83:778195..7783711690881167.8466291-UTR-C-linearis_contig83:778195..778371Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 778196..778371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.25734-CDS-C-linearis_contig83:776185..7770341622930629.25734-CDS-C-linearis_contig83:776185..777034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 776186..777034 -
1690881167.7996569-CDS-C-linearis_contig83:776185..7770341690881167.7996569-CDS-C-linearis_contig83:776185..777034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 776186..777034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16079.1prot_C-linearis_contig83.16079.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 776186..777034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16079.1

>prot_C-linearis_contig83.16079.1 ID=prot_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MAGWMLSIALTRVKRDGRLGSSFLPFVYSHRYDTAKAFIHAHPSHEGLEF
EVADRNVSWHGKGLLVASVLFFEFVYTLERGYHHALKNPLLLATFLGNFT
SEIFRVVSSATAVREAWASCVQVVQGGFVVPEEAGGKFDELFNFMMLKWH
RCRIGEFTKRLSKVSKSQKEAKAGSAAKRDQLKIISTTGGSKEASKISSS
VVQVGDKILSEQEKEVAFNLSKLSARTFGYLDGGALRGCIKQCGGDGMTL
TKLDVEELRDIIRKLCPGIGEDEPVDAVAPQV*
back to top

mRNA from alignment at C-linearis_contig83:775902..778371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16079.1 ID=mRNA_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2470bp|location=Sequence derived from alignment at C-linearis_contig83:775902..778371- (Chordaria linearis ClinC8C monoicous)
GTTCGCAGCGTCGACGTCGGGGTCAATCCAGATCCGCCCAGAGCTCATAC TTCGAAGTATACCTTTATCGGGCGCGGCATTGAGTGCCATGGGTGCCTAC AGAGCGGACGCGGGTGGAGCGGTTGGGGGGAATGGTGACGATGACGAACA GCCCGACTCGGATGATGAGAGACCAGGTGATCAACCTCGTTGCCCATCGT GCAATTTGCTGTATATACCAGACAACGTACCCTGTCGGCGTCTTTGTTAA TGGTGGGGGGCAAGCCCTCTCTTTGTTTGATTGAACTACCTCTTGTTGCT ACCTCTTGTTGAAGTTTTGAAGGTGACGGAGACAGTTCTCCTAGACCGGG ACGAGGTGACGAGTAGGAGGAAGGATTGATCGAAGAAATCGTCGATATCC AGGATAGACAGTCCCTTGATCGACGGGAGAAGAAAACAACCGCTACCCTC CAGCAGCAGGTATGGTGGTGCCGTTGATGTTGTACGCATGAAGTGGACGT GGTTGACAACGTATGCATGTGTGAAATACCTTTGCCACATTTACTTTGTC CTGGCATGATTTCAAAGGTAGTTGCTCCACGTCCCTTTGTTTCGCCCAGG GTGGACAGGAGACCTTGACAGGTGTTGTTCAACAGCTTCCGGACGCAGAA GATGTCGTGGGCCAGGTGGTGAAAGAAGTGCAAGGGTGTTGCACGGGGCA CTACCAACATCTCGCAGAGGTGGCACTTGCGTTGTGCGCCCTAGCCTCGA CCAAAATCGTCGTCATCAGCCTGTGGAAGTTTTTCTTGGAGATGTTGTTG GAGAACGCGGGGGGGGGTTGGATTCGAAGAGGGCTGCGGCGTTTACCTTT GCACGGCTGCGTACCCACCCAGGGCGCCTTCGTTCGTTCCTCGGGGATAC GAGCAACAGAGAAACGGCTCTCGATATTGCTGGCGACAAGAGGTTCGAGA GGTGTCTTTCTGGTGTATACAACCTCATCGACCAGGTGAGCAGCATAAAT GCGTAGGTTGGCTGTAGGAAGGATTTGCGGCCTGATCTGTTAGGCCTGGT GCCGTGTATTCCGAGTTGCCGAAAGCCGCAGTTGCCATGACAAAGTGCGC CTCGCTTGTCGTGTCTAAACATAGTATAAGTTGTTCGCGTTGACAATGAG TCACCCTGTACGTGTGGGTCGCTGGTTAACCTTCGCTGTTGTCCATTCGG GATGCCTTCTCTTTCTCACAACACAGGTTACCCTTGCTGTATTCACGAAA GCGCTGGAGGATGTGAGCCGTGTGAGGGTGACGTACCCAACCTTGGTGTT TGACCTCGACGCAGATCGCCAAAACGTTATCTTCTACATGGCCGGCTGGA TGCTGAGTATAGCTCTCACCCGTGTCAAAAGAGATGGTCGGTTGGGTTCG TCGTTCTTGCCGTTCGTATACAGCCACAGGTATGACACAGCAAAAGCTTT CATACACGCGCATCCATCCCACGAAGGGCTAGAATTCGAGGTGGCAGACA GGAATGTTTCCTGGCACGGAAAGGGTCTTCTGGTTGCGTCCGTCCTATTT TTCGAGTTTGTGTACACGTTAGAGAGGGGGTACCACCATGCACTGAAGAA CCCTCTGCTACTTGCGACTTTCCTCGGAAATTTCACCTCGGAAATCTTCC GTGTCGTTTCTAGTGCTACCGCTGTAAGAGAAGCTTGGGCGAGTTGTGTG CAGGTCGTTCAGGGTGGCTTTGTTGTACCCGAAGAGGCAGGAGGGAAGTT CGACGAGCTGTTTAACTTCATGATGCTTAAGTGGCACAGGTGCCGCATAG GCGAGTTCACAAAACGCCTGTCCAAAGTCTCCAAGAGCCAAAAGGAGGCT AAAGCGGGCTCTGCGGCCAAGCGCGACCAGTTGAAGATTATTTCGACTAC GGGGGGGAGTAAGGAGGCGTCGAAAATCTCATCATCAGTAGTGCAGGTCG GGGATAAGATTCTAAGCGAACAGGAAAAAGAGGTTGCCTTCAACCTCTCT AAGCTTTCGGCGAGAACATTTGGCTACTTGGATGGTGGAGCTCTCAGGGG ATGTATTAAGCAGTGCGGTGGTGACGGGATGACGTTGACGAAACTCGACG TTGAGGAGTTGCGAGATATCATTCGGAAGCTATGCCCGGGCATTGGTGAG GATGAACCGGTGGATGCTGTTGCACCACAAGTGTAATCGGTAGAGGCCGG GGGGTTGTACGGTTAAGTAGGGTTACCCAACTATTGCCTCCGGTTTGAAA CCAGTGTTGGATACAAATTCAGTTTCGCCGATTTTTAAAGTTTTGTCTTG TCCTCCTTGATGTGTCGCGATGTGTCGCGCGCGGGCAAGAAAATACGCGG TTGTTGTCTAACATCGACAGTCGGGCTGGGCTGCCTTGGCAAACTCCTAG AAAAAGCTGAACGCCCAATGTATTTTAACGACAACAAAGGTGTCTCGCAT ATTGCATATTTTCCAGTCTA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig83:775902..778371-

>mRNA_C-linearis_contig83.16079.1 ID=mRNA_C-linearis_contig83.16079.1|Name=mRNA_C-linearis_contig83.16079.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig83:775902..778371- (Chordaria linearis ClinC8C monoicous)
ATGGCCGGCTGGATGCTGAGTATAGCTCTCACCCGTGTCAAAAGAGATGG
TCGGTTGGGTTCGTCGTTCTTGCCGTTCGTATACAGCCACAGGTATGACA
CAGCAAAAGCTTTCATACACGCGCATCCATCCCACGAAGGGCTAGAATTC
GAGGTGGCAGACAGGAATGTTTCCTGGCACGGAAAGGGTCTTCTGGTTGC
GTCCGTCCTATTTTTCGAGTTTGTGTACACGTTAGAGAGGGGGTACCACC
ATGCACTGAAGAACCCTCTGCTACTTGCGACTTTCCTCGGAAATTTCACC
TCGGAAATCTTCCGTGTCGTTTCTAGTGCTACCGCTGTAAGAGAAGCTTG
GGCGAGTTGTGTGCAGGTCGTTCAGGGTGGCTTTGTTGTACCCGAAGAGG
CAGGAGGGAAGTTCGACGAGCTGTTTAACTTCATGATGCTTAAGTGGCAC
AGGTGCCGCATAGGCGAGTTCACAAAACGCCTGTCCAAAGTCTCCAAGAG
CCAAAAGGAGGCTAAAGCGGGCTCTGCGGCCAAGCGCGACCAGTTGAAGA
TTATTTCGACTACGGGGGGGAGTAAGGAGGCGTCGAAAATCTCATCATCA
GTAGTGCAGGTCGGGGATAAGATTCTAAGCGAACAGGAAAAAGAGGTTGC
CTTCAACCTCTCTAAGCTTTCGGCGAGAACATTTGGCTACTTGGATGGTG
GAGCTCTCAGGGGATGTATTAAGCAGTGCGGTGGTGACGGGATGACGTTG
ACGAAACTCGACGTTGAGGAGTTGCGAGATATCATTCGGAAGCTATGCCC
GGGCATTGGTGAGGATGAACCGGTGGATGCTGTTGCACCACAAGTGTAAA
TGGCCGGCTGGATGCTGAGTATAGCTCTCACCCGTGTCAAAAGAGATGGT
CGGTTGGGTTCGTCGTTCTTGCCGTTCGTATACAGCCACAGGTATGACAC
AGCAAAAGCTTTCATACACGCGCATCCATCCCACGAAGGGCTAGAATTCG
AGGTGGCAGACAGGAATGTTTCCTGGCACGGAAAGGGTCTTCTGGTTGCG
TCCGTCCTATTTTTCGAGTTTGTGTACACGTTAGAGAGGGGGTACCACCA
TGCACTGAAGAACCCTCTGCTACTTGCGACTTTCCTCGGAAATTTCACCT
CGGAAATCTTCCGTGTCGTTTCTAGTGCTACCGCTGTAAGAGAAGCTTGG
GCGAGTTGTGTGCAGGTCGTTCAGGGTGGCTTTGTTGTACCCGAAGAGGC
AGGAGGGAAGTTCGACGAGCTGTTTAACTTCATGATGCTTAAGTGGCACA
GGTGCCGCATAGGCGAGTTCACAAAACGCCTGTCCAAAGTCTCCAAGAGC
CAAAAGGAGGCTAAAGCGGGCTCTGCGGCCAAGCGCGACCAGTTGAAGAT
TATTTCGACTACGGGGGGGAGTAAGGAGGCGTCGAAAATCTCATCATCAG
TAGTGCAGGTCGGGGATAAGATTCTAAGCGAACAGGAAAAAGAGGTTGCC
TTCAACCTCTCTAAGCTTTCGGCGAGAACATTTGGCTACTTGGATGGTGG
AGCTCTCAGGGGATGTATTAAGCAGTGCGGTGGTGACGGGATGACGTTGA
CGAAACTCGACGTTGAGGAGTTGCGAGATATCATTCGGAAGCTATGCCCG
GGCATTGGTGAGGATGAACCGGTGGATGCTGTTGCACCACAAGTGTAA
back to top