mRNA_C-linearis_contig83.16071.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: D7FM04_ECTSI (Similar to voltage-dependent calcium channel T-type alpha 1I subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM04_ECTSI) HSP 1 Score: 1228 bits (3176), Expect = 0.000e+0 Identity = 797/1496 (53.28%), Postives = 950/1496 (63.50%), Query Frame = 1
Query: 1 TTRAQLESVALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYDHQANMQGQCLLRAASHEIAAAAALEQLTSRLCESRVGDRKLVARLVETRQHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTIDDGERSPGITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKCAYALVQSLDINGENPR--NGA--------TTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAVHVMKAEGIRGRNPTVLYRLNSVSKGHKAAVRSVAWLEPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQADTA--AVTAIEVAWERVYSGSGSSGVIKAWTPLWEDETKEKLLGFSQAGQYSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPPRQDAANAALFLPHTAQGAAASSLPPPHDTEAQERQRNHSDSTEEPSPALLPPPSP-PAMPAQAGAVDDEARDGVTHESDPGVVVHVAGVVGMAVVPGGLVSADLEGRLLERGPERLIESHRTQMLPGEEIIQRLRPLALEVLRARAH---TKP---GGAAAAAGAASLVPQVAAGLGLVSSDHLCAVRFLLRAKAKRRLKEEIRAEKKKEADLKTATIFAARLGHQQGAAGPLARPMPGANKAPRESTSSDRSSASETATRARRRTILNSVSMPDVGGQDGGGMSQETADVANDVTKIADMDQKPAFLEAADLERLAKHPEVYLAELMTHFFPGRDLAPPRPSGSSEASASKRATRDRITRSSAGGGAKHVPLLDRVKARRRSAAKGIPTLGGGRRSFNLPGAVSIFSSTMEAARRAAAIPHDRTRSTDASLFSSGARDDGGEDSEEDPISLKLLSPETTGG--GPATAEVGLRDTPQARRRSITPTFNLGALLQRATREKGERNEAEGVTRQPE--AGVGNEQEEEEDNGDERVGQEKVQPIIPPAPQ----SRTHHLEEPREKRTRATSLPRTVPELSRRKAIAPAEAREQAEASEVEDTSFVGDNFSTIQLRQHGGTVTVYVPRSPPPGVWAASVAYDGERDVAWVLAEALRMYGTEHDPVIRHAGLARRPGLVRRPPARLGLFRADSKE-WEPTVALSPESPVLSVLTPGEELVVLVDGWRPELAFARRPSVTALP------LPRAGDRMAGRPDGLEAAGGGARGNRGVGMTPTFAEDGC-DAWRARSDGAWRFASKVEAERNARRSLVRLPEE-TKISGSSYIG----VTPKGGLESVVVETSERHRKRVGDIEHRDITDDYDEAGGDGKECGDSDG--WDSDSSLTDEXXXXXXXXXXXHYHYQN-----PLYQQGGTSQ-----------HSGGQEVTTNDISVTTKGLDQRCEDGAEADIDGRLE-----EAGGEVRGQQRASEEYPQPRSPPRSLVSAVFRAWG 4299
TTRAQ E VAL ECS+LRTQLPATFRAR S+ALTAEFLRW+DHVDL G D + ++ G+CLL AASHEI A AA+EQLT+RL ES VGDRKLV RL E RQH++ L+ LR+KL+ ARGDYLQT+WDG SLRVRQTIDD ER+ GITG+C SVDG WVFC TD+GLLKVF+RGK R K K+T Q+ AYALVQ++ +NG+ P+ NG TT+GLC+ACSP+GF VM GCSD+ +RT+ QDTAG+RRAVH MKA G+RGR P +LYR SV KGHKAAVR V WL+PGY+YTGGE+G VCMW AA RP Q VDVCRS S VRCL++W+TTYS DLLAAC +VDD QE++PPV LLAGD DGYLSVLPAR DS FF ID+WK SL+HQ D + AVTA+EVAW RVY+ SG +GVIKAWTPLW+D TKEKLLGFS GQY+VHSG VSSI+Y KGLMFSAG+D+SI+TWYPPR+ + G A++S P PHD E +R++S STEEPSPALL PPSP PA+ + G + R GV HE+DPGVVVHVA V+G+AVVPG LVSAD GRLLERGP R IE H Q+LP +E IQ LRP+ALEVLR RAH T P GGAAA AA+ A + DHL AVRFLLRAKAKRR KEEIR EK+K ADL+TA IFA+RLG Q G RPM GA +APR+S SSDRSSAS+T RARR +IL+SVSM V GQDG G+SQE ADV+ K+ADMDQKPAFLE ADLERL K+P+VYLAELM HFFPGRDLAP R GS A+A R +RI RS AGG K D VK + G G + P A + FSST++AARRAA H R+ ++AS S TG G +G + R + +LGALL RATR+ E + + T++P AG G E + ++P + Q S + + E R + PE + A +Q+ A + DTSFVGDN+ST Q+R+ G VTV+VP SP PGVWAASV YDGERDVAWVLAEALRMY TEH PV RHAGLARRP LV R P R GLF+ +SKE WE LS +PVLSVL PGEELVVLV+G+ P AFARRPSV ALP P A R+ G DG + V + ED D RA SDG RFA E E A + R+ T+ G S G ++ GG + T + G DI G +E GD D + SD SLT XXXXXXXXXXX P Y G ++ +S Q D SVTT+G+ +RCE+ R GGE R +++A + +PQ RSPPRSLV+ ++ AWG
Sbjct: 1553 TTRAQQEGVALRECSVLRTQLPATFRARISMALTAEFLRWKDHVDLWGCDGEVDLLGRCLLEAASHEINATAAVEQLTTRLFESHVGDRKLVTRLAEIRQHLLTLKGLRVKLNAARGDYLQTSWDGGSLRVRQTIDDEERNSGITGICASVDGVWVFCTTDDGLLKVFKRGKPPRR-KGKKRTNQQGAYALVQNMGVNGDIPKGSNGGKGSSGSKRTTRGLCVACSPDGFIVMAGCSDSGVRTFCQDTAGFRRAVHEMKAAGVRGRKPPILYRPTSVGKGHKAAVRCVTWLDPGYFYTGGEDGTVCMWNKSAANRPAQFVDVCRSNFSCGPVRCLSVWRTTYSTDLLAACFEVDDGQEVDPPVCLLAGDGDGYLSVLPARTDSSFFAIDIWKTSLRHQVDASGGAVTAVEVAWGRVYTASGLAGVIKAWTPLWDDATKEKLLGFSPVGQYAVHSGEVSSIVYAKGLMFSAGADMSIITWYPPRETGTS----------GRASASPPSPHDEEQTRLRRHNSGSTEEPSPALLAPPSPAPALASNEGGI----RTGVKHENDPGVVVHVAEVIGIAVVPGALVSADAAGRLLERGPSRHIERHCRQILPSDEAIQSLRPIALEVLRTRAHARRTTPAHRGGAAACTVAATAAGTDTAVVAQAVQDHLRAVRFLLRAKAKRRAKEEIRVEKQKAADLQTAAIFASRLGQQAG------RPMLGAGRAPRDSASSDRSSASDTFVRARRCSILSSVSMRPVAGQDGEGISQEAADVS----KLADMDQKPAFLETADLERLVKNPDVYLAELMRHFFPGRDLAPSRFPGSRGAAADTRTAPERIARSIAGGSGKRPSASDSVKVK-----------GKGDKKKRFPPAATNFSSTIDAARRAAMRMHARSHRSEASR------------SXXXXXXXXXXEDVETGDKEGHDDLHIGNMEGSLVRMETALEGRSLGALLLRATRDNREDIDTKHATQEPAVAAGKGEEGXXXXXXXXXKPRPHALEPDVNNVKQGSESSASLNSNEDRSGTSTRAGTADHKPEERTHQWGGAGSAIDQSSAGQDADTSFVGDNYSTAQMRRKG-CVTVFVPHSPSPGVWAASVEYDGERDVAWVLAEALRMYATEHSPVARHAGLARRPRLVERSPTRWGLFQGNSKESWEQGPVLSAAAPVLSVLRPGEELVVLVEGFDPAAAFARRPSVVALPHVRNDAAPGASTRIKGDRDGSLSLP-----TLPVDDAASMREDALSDGSRAPSDGPRRFAGISEPE--AADACTRVSATLTRGGGDSRGGAGDSLSATGGDQVPGAATLVAN----GPAMFEDIKTGGYYRGRKSQELGDEDANVYSSDDSLTXXXXXXXXXXXXXXXXXXXXXXXXPYYAAGDAARRPIGGNASLGRNSPAQSRLVTDASVTTRGITERCENDNSGGGGSRSRGLGSVATGGERRDERQAGDGFPQDRSPPRSLVARMYAAWG 2988
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: A0A835ZJT8_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJT8_9STRA) HSP 1 Score: 236 bits (602), Expect = 6.810e-59 Identity = 183/609 (30.05%), Postives = 269/609 (44.17%), Query Frame = 1
Query: 178 LLRAASHEIAAAAALEQLTSRLCESRVG--DRKLVARLVETRQHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTIDDGERSP-----------GITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKC------------------------------AYALVQSLDINGENPRNGATTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAV-HVMKAE-------GIRGRNPTVLYRLNSVSKGHKAAVRSVAWL-EPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDD---IQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQADT-AAVTAIEVAWERVYSGSGSSGVIKAWTPLWEDETKEKLLGFSQAGQYSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPPRQDAANAALFLPHTAQGAAASSLPPPHDTEAQERQRNHSDSTEEPSPALLPPPSPPAMPAQAGAVDDEARDGVTHESDPGVVVHVAGVVGMAVVPGGLVSADLEGRLLERGPERLIESHRTQMLPGEEIIQRLRPLALEVLR 1836
L+R + E+ A E+ + + + +G DR + LV R + +L L + +GD ++ TWD A+LR QT+ +P G+T +C + WVF T G L+VF+ + RR + A AYA Q LD+ + G +GLC+AC+P+ V VGC+D +R + QD G++ + H +A+ G G ++ Y+ ++V+ GH V + W+ E G +GG +G V +WR + R +QS DVCR L S TVRCL +W+ LLAAC++ ++ P+ LAGD+ G +SVLP R DSKF +D W L+H A AVTA++VAW RVY+ SG+SG IK W P W+DE + G+ SVHS V++I GL+ +A D+SIVTW P Q AV TH +D G + H AGV + V +SAD G L+ R E+ + +P + RL P+A EV+R
Sbjct: 1803 LMRPTAFELEIAELQEKTRAEVAQKHLGEGDRAVEHLLVVARAYRASLATLLQRALRQQGDLVEPTWDAAALRTHQTLCVEPAAPPSGKAKAPKAEGVTALCAAAAAEWVFACTAAGTLRVFK-ARGRRARRDADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAYAQTQVLDV-----KQGGGVRGLCVACTPDAKRVFVGCTDKTVRQFVQDVKGWKESKKHAQRAKASGSGHGGSGGPKHSMQYQADAVATGHNGEVTCLEWVPELGLCLSGGADGTVRLWRP-RSPRCVQSTDVCRGMLGSGTVRCLKVWRVKLPDALLAACVEASAPHAAAAVDAPLVALAGDDRGCVSVLPLRADSKFLALDAWAPMLRHAAHARGAVTAVQVAWGRVYTASGASGTIKIWQPKWQDERCLVMQSLELVGEQSVHSKPVTAIAAPPGLLLTASEDMSIVTWRAXXXXXXXXXXXXXXXXXXXXXXXXXXV-----------------------------PGATTQLSAV--------THATDQGFIGHAAGVTALVAVANVALSADAAGGLVVRRAAAWSEAAVLREVPSAAEVARLLPMAKEVVR 2367
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: A0A6H5K9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S1_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.850e-21 Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 844 EPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELE 1050
+PGY+YTGGE+G VCMW AA RP Q VDVCRS S VRCL++W+TTYS+DLLAAC +VDD Q L+
Sbjct: 14 DPGYFYTGGEDGTVCMWNKRAANRPAQFVDVCRSNFSCGPVRCLSVWRTTYSIDLLAACFEVDDGQGLK 82
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: F0YJS4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJS4_AURAN) HSP 1 Score: 62.8 bits (151), Expect = 6.940e-6 Identity = 111/511 (21.72%), Postives = 199/511 (38.94%), Query Frame = 1
Query: 28 ALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYDHQANMQGQCLLRAASHE-IAAAAALEQLTSRLCESRVGDRKLVARLVETR----QHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTI-------DDGERSPGITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKCAYALVQSLDINGENPRNGATTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAVHVMKAEGIRGRNPTVLYRLNSVSKGHKAAVRSVAWLEPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQA--DTAAVTAIEVAWERVYSG--SGSSGVIKAWTPLWEDETKEKL------LGFSQAGQ----------------------------YSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPP 1410
A+ + +L++ P FR R ALT E RW+ ++ +D ++ + L+++ E ++A LE L R+ + L+ L E R +HV L L +++ R +++ W S++ T+ + +R+ V G DG V A + V+++ K + +P + + G ++V + R +S R V K G +G +R S+ GH AAV + + + ++ E+G + +WR A +Q+ V S + + + L K D L V + + V GD G L VLP L S++ + VW+ +K A VTA++V + VY+G +G V K + +T ++ LG+ ++G HS ++S G++FSA +D++IV+W P
Sbjct: 1937 AVLDLALMQRARPDVFRYRLRQALTLEAHRWQKQIEFSKFDEESFFECGLLIKSIKEERLSAQMQLEVL------HRLAAKGLLMSLQERRPKLHRHVTFLAALLNRVEAERSKHVRKAWLAGSMKHEGTLPVATKHAEGKDRAVSCVAV-GGKDGELVVTAHGGRHVTVWKKRKXXXXXXXXXXXXXXXXXXXXEEA----RDPWHFSPFYKTQQMTEDLGTCLVVAMTPDGRRFFSSAGEQIRGWVQGKKVRGFKGTK----FRCESIMLGHAAAVTRLV-VAHRHVFSVSEDGTIKIWRFRATDA-LQTATVSYSAQAMS-LAILNTTKPGVPEDYLGLHA-VAGLGQGRTRVIQRLGD--GSLCVLPFSLKSQWMQGAVWETKIKKLAFEGREPVTALDVQYRCVYAGCATGRIAVFKIVAGSEDMDTLQQAAKELERLGYGKSGDAFKRKGGGLDGRATSMLREVVRLDYVFTLDCHSSTITSFCMAGGVLFSAATDMAIVSWMKP 2426 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16071.1 >prot_C-linearis_contig83.16071.1 ID=prot_C-linearis_contig83.16071.1|Name=mRNA_C-linearis_contig83.16071.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1436bp TTRAQLESVALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYDback to top mRNA from alignment at C-linearis_contig83:664166..673030- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16071.1 ID=mRNA_C-linearis_contig83.16071.1|Name=mRNA_C-linearis_contig83.16071.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8865bp|location=Sequence derived from alignment at C-linearis_contig83:664166..673030- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:664166..673030- >mRNA_C-linearis_contig83.16071.1 ID=mRNA_C-linearis_contig83.16071.1|Name=mRNA_C-linearis_contig83.16071.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8616bp|location=Sequence derived from alignment at C-linearis_contig83:664166..673030- (Chordaria linearis ClinC8C monoicous)back to top |