mRNA_C-linearis_contig83.16069.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 385 bits (988), Expect = 7.560e-116 Identity = 237/514 (46.11%), Postives = 314/514 (61.09%), Query Frame = 2
Query: 95 LRYSWKALLENSDYFPYESHTEACLATYVRLAQLSRRNIDLLFFILRLVDKFGNGINPADVPESADHFKSNMRQRTPLRPVYGQEVDEKGSGRAGSSAAQQDDTGRTKLVVSIPVGKVIQGKLLSPSFVERLLASTAGHTMS------GRREAAEQGALPARPADSHRKT---GWLEARCNVRESCRPVIAFRSRLDHGRTRRRGHTSCGR*YCHGPG--DGCAPNPGRLEALVWFEDNDTHDGGEGRSRLIAKIQWFRRLSAGGPGVQLPQNLIGDSLSMLWEDTNDAETIELSELTGRCRIIGPTAPTPGDSDDESSLPTFRGMGFVEKFRSGRYDRLKSPDPAVGSLPWRHARHERLFYDRRKEGNNWNDDPDRRVLSTPAQIVTVAFNYRRQGGASYSVNATLLSAFASTSRAFRRRPESWPLVCLAAPRVKWQDDLTFLSEAIEVLQKGCLANLATGDGGPEAELADGEYDVEKNAAQTMVSSTHSLEVVGEAKTRLEEQQQVSKIHGV 1603
LRYS +AL E +Y PYES T+A LA + R+A SR + LLF LR DK GNGIN DVP+SADHF +MR R+PL PVYGQ+ EKGSG A +S + G T+L VSIP G +IQ L SP FVE+LLA+T+ HT+S GR A +P R D R+ G + A ++ ++ + D G T PG +G P RLE+LVW +D D GG G R++A++Q +A +++ ++ G + WE TND ++ S+L GRC ++G G+ D S+LP+FRG+GFV++ RSGR+ L SPDPAV LPWR ERLFYDRR+ G++WN+D +RRV TPA + T AF++R QGG SY + ATLLS FASTS+AFRR+P +WPLV L+APRV+WQDDL F+ E I VLQKGC A LA D E +LADG YD+ +N +T + ++L+V+ A T + Q SK HGV
Sbjct: 58 LRYSLRAL-ERGEYEPYESFTQALLAAFTRIASPSRSQLGLLFHCLRQTDKDGNGINAVDVPDSADHFHRDMRARSPLFPVYGQDFREKGSGGAATSGVEDASDGPTRLAVSIPAGVMIQRMLDSPGFVEKLLANTSRHTLSESDRVNGRVPDAHVMPIPTRRTDGVRQGAMYGDIAASSSIFGIDSIMVGQGDKEDRVVV---GDTVM---VVDLPGQVEGAGALPCRLESLVWSKDCDIAGGG-GNDRIVARVQRCLLNNALSAEMKVEEDAPGTKTGV-WEVTNDGVDLDTSKLVGRCEVVGSDDVHTGE--DGSALPSFRGVGFVKRLRSGRHTPLPSPDPAVKHLPWRPEGAERLFYDRRQNGSHWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSPFASTSQAFRRQPGAWPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADK-VEEDLADGNYDIVRNR-RTDDQTEYALKVISTATTGTQRQALSSK-HGV 557
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Match: A0A6H5K6B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B6_9PHAE) HSP 1 Score: 185 bits (470), Expect = 3.330e-48 Identity = 156/441 (35.37%), Postives = 207/441 (46.94%), Query Frame = 2
Query: 95 LRYSWKALLENSDYFPYESHTEACLATYVRLAQLSRRNIDLLFFILRLVDKFGNGINPADVPESADHFKSNMRQRTPLRPVYGQEVDEKGSGRAGSSAAQQDDTGRTKLVVSIPVGKVIQGKLLSPSFVERLLASTAGHTMSGRREAAEQGALPARPADSH-----RKTGWLEARCNVRE--SCRPVIAFRSRLDHGRTRRRGHTSCGR*YC----HGPGDGCAPNPGRLEALVWFEDNDTHDGGEGRSRLIAKIQWFRRLSAGGPGVQLPQNLIGDSLSMLWEDTNDAETIELSELTGRCRIIGPTAPTPGDSDDESSLPTFRGMGFVEKFRSGRYDRLKSPDPAVGSLPWRHARHERLFYDRRKEGNNWNDDPDRRVLSTPAQIVTVAFNYRRQGG----ASYSVNATLLSAFASTSRAFRRRPESWPLVCLAAPRVKW 1372
LRYS +AL E DY PYES T+A LA ++R+A SR + LLF + DK GNGINP DVP+SADHF +MR EKG+G A +S + G T+L VSIP G +IQ L SP FVE+LLA T+GHT+S E + R D+ R+T W+ + +C S + G+ + G G +G P RLE+LVW +D GG R++A++Q + L+ LS + DA + + G AP SL R A RLFYDRR+ GN+WN+ +RRV T A + T AF++R Q ASYS+ ATLLS FASTS+AFR+ P +W LV L+A RV+W
Sbjct: 14 LRYSLRAL-EGGDYEPYESFTQAFLAGFIRIASPSRSQLGLLFHCVLQTDKDGNGINPVDVPDSADHFLRDMR--------------EKGNGGAATSGVEDASDGPTRLAVSIPAGVMIQRMLDSPGFVEKLLAVTSGHTLS------ETDRVNGRVPDAQVMIPTRRTNWVRQGAVYGDFAACSSTCGVDS-IMVGQGDKEDRVVVGNTVMVVDVPGQAEGADALPCRLESLVWNKDCYIAGGGS-NDRIVARVQ---------------RCLLNSDLSAETKVEEDAPSTK----------TGVQAP---------------------------------------SLETRKAA--RLFYDRRRTGNHWNNGKERRVFLTSAHLSTDAFDFRNQASVSRRASYSIKATLLSPFASTSQAFRQ-PGAWLLVGLSALRVRW 364
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE) HSP 1 Score: 187 bits (475), Expect = 3.320e-45 Identity = 166/511 (32.49%), Postives = 236/511 (46.18%), Query Frame = 2
Query: 128 SDYFPYESHTEACLATYVRLAQLSRRNIDLLFFILRLVDKFGNGINPADVPESADHFKSNMRQRTPLRPVYGQEVDEKGSGRAGSSAAQQDDTGRTKLVVSIPVGKVIQGKLLSPSFVERLLASTAGHTM-SGRREAA-----EQGALPARPADSHRKTGWLEARCNVRESCRPVIAFRSRLDHGRTRRRGHTSCGR*YCHGPGDGCAPN--PGRLEALVWFEDNDTHDGGEGRSRLIAKIQWF-RRLSAGGPGVQLPQNLIGDSLSMLWE--DTNDAETIELSELTGRCRIIGPTAPTPGDSDDESSLPTFRGMGFVEKFRSGRYDRLKSPDPAVGSLPWRHARHERLFYDRRKEGNNWNDDPDRRVLSTPAQIVTVAFNYRRQGGASYSVNATLLSAFASTSRAFRRRPESWPLVCLAAPRVKWQDDLTFLSEAIEVLQKGCLANLATGDGGP------------------EAELADGEYDVEKNAAQTMVSSTHSLEVVGEAKTRLEE 1573
S + PY + T A LA YVRLA L+R +LLF LR D+ G GI PADVP SADHF + R TPL PV +E+D+K G T VV ++Q +L SP +L + GH + S REA+ A+ +PA R+ G+L + + V + L G + R+ G D P RL +VW ED SRL++++ F A G P +++ WE D + E I++S + GRC ++ P G + SS F GF+ + +Y ++ SP LPWR LF+D+R +N V S P I T AFN+ ++GG+ YS+NAT + ST+RAFRRR ESW L L APR +W+ +L + I +Q GC A + DG P + EL DG+YD+ NA + M HSL +V + T+ ++
Sbjct: 3 SKWCPYPNLTFAILANYVRLASLTRAQQNLLFSCLRYTDEDGQGIKPADVPASADHFARDARLLTPLLPVTEREIDDK--------------KGFTTSVVGFSPAALLQRRLESPGAAAGILDNLEGHLLTSAEREASGVPDEHLTAVATKPAGGLRR-GFLHGKVAAASALMGVES----LLVGPSGRQEKIFVGDTVLVASADERPEEARPYRLAEVVWVED---------LSRLVSRVSPFLTSAEARITGAGAPPDVV-------WEVVDGDGGEEIDISRIEGRCDVV-PHVQGAG-AGSSSSGRVFSAAGFIRRCGKEKYKKVWSPSGQPKVLPWRFEGLYGLFFDKRAARVYFNK-AGLPVFSIPLVIFTDAFNFFQRGGSPYSINATHFT-IGSTTRAFRRRLESWDLCSLGAPRARWEQELDGVFGTIGKMQNGCRARVCI-DGEPVVRSGSGTFKPCNVCNVTQDELGDGQYDIAGNA-RMMDGIDHSLSLVRKEATKTKQ 472
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI) HSP 1 Score: 164 bits (415), Expect = 3.490e-38 Identity = 103/256 (40.23%), Postives = 141/256 (55.08%), Query Frame = 1
Query: 1495 KKRRTDDGIEYSLAGGRG*SQDAAGGAAAGLEDPW-CEQSRATNPLRKHVHMNMELGVGIDPFHQCSQNSSRKVLRWVFGGLSETFGKPLVASRARDPHLRMPGNPPLRDIVKDSGFAAQTGMEVWGLMGVVLLLARPVLTNVASMKRHFTKPFISTLKKKLKAGSHE-----PVLEKLRDLLWAASVATYYVRLGFYGEEDAKEVHRTQRDKVTLMGEMIPDKDGGRLCS----NHQGLHYSKNIDSLGELIDCH 2232
+ RRTDD EY+L + S G L NP RKHVH+NM GID FHQ +QNS RK+ + + GGLS+ G PL++ A+DP LR+ G PPLRD V D GF+A +GM+VW L V LL+ RPVL +VASMKR T PF + ++ +L A + V+EKLR LL A+S AT+ +R + +E + R+QR+K TL + P G+ S G H++ + + L H
Sbjct: 232 RNRRTDDQTEYAL---KVISTAPTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDLFHQDAQNSLRKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSEATHLLRSSSFNDETVASIDRSQREK-TLQSSIFPGDQRGQRASFYDRRQNGSHWNNDKERRVFLTPAH 483
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.760e-28 Identity = 93/282 (32.98%), Postives = 132/282 (46.81%), Query Frame = 1
Query: 1858 MEVWGLMGVVLLLARPVLTNVASMKRHFTKPFISTLKKKLKAGSHEPVLEKLRDLLWAASVATYYVRLGFYGEEDAKEVHRTQRDKVTLMGEMIPDKDGGRLCSNHQGLHYSKNIDSLGELIDCHAEESRYKSLK-----------SSSRTSRGREIELHIIQRENDVMAADAMMEGQAWVASAFDKKTQSWVPETLRAGPTCIELLEMVSE-KIGKQRGHGTGMPRGVQEWSVDLSNSVEPAAASGWEREVLRVLR---QPALKLLDHYKAWFSCTRQTGD 2658
M+VW L V LL+ RP L +VASMK T PF ++ +LKA T V+LM +I ++ GRLCSNHQGLH++KN + + S+ + + +S T+ GR+ E HI++REND AA+ M EG W A DK + WV +T++A P+C ELL +SE +IG + G G +S + A W+ ++ +LR Q L LLD YKAWFSC R+ +
Sbjct: 1 MDVWRLSSVALLVFRPAL-SVASMKHLTTAPFRKDVQSELKA---------------------------------------TTATVVSLMSMLIGEQHRGRLCSNHQGLHFAKNATPY---VVIRVQTSKQQDAEKFNANHGIPHGASLLTASGRDNEEHIVRRENDATAAEVMAEGARWTAWRDDKTMREWVKKTVQASPSCRELLRAISEWEIGTRTAPGD---HGESLSGTPVSGNRLRLRAQRWQEKIGALLRRTGQGGLNLLDLYKAWFSCGREKSN 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16069.1 >prot_C-linearis_contig83.16069.1 ID=prot_C-linearis_contig83.16069.1|Name=mRNA_C-linearis_contig83.16069.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=338bp MNMELGVGIDPFHQCSQNSSRKVLRWVFGGLSETFGKPLVASRARDPHLRback to top mRNA from alignment at C-linearis_contig83:626812..631247+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16069.1 ID=mRNA_C-linearis_contig83.16069.1|Name=mRNA_C-linearis_contig83.16069.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4436bp|location=Sequence derived from alignment at C-linearis_contig83:626812..631247+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:626812..631247+ >mRNA_C-linearis_contig83.16069.1 ID=mRNA_C-linearis_contig83.16069.1|Name=mRNA_C-linearis_contig83.16069.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at C-linearis_contig83:626812..631247+ (Chordaria linearis ClinC8C monoicous)back to top |