mRNA_C-linearis_contig83.16068.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16068.1
Unique NamemRNA_C-linearis_contig83.16068.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:620102..620597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size496
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16068.1prot_C-linearis_contig83.16068.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 620228..620536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.642398-UTR-C-linearis_contig83:620101..6202271622930620.642398-UTR-C-linearis_contig83:620101..620227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 620102..620227 +
1690881163.4685717-UTR-C-linearis_contig83:620101..6202271690881163.4685717-UTR-C-linearis_contig83:620101..620227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 620102..620227 +
1622930620.6734188-UTR-C-linearis_contig83:620536..6205971622930620.6734188-UTR-C-linearis_contig83:620536..620597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 620537..620597 +
1690881163.489804-UTR-C-linearis_contig83:620536..6205971690881163.489804-UTR-C-linearis_contig83:620536..620597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 620537..620597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.6572518-CDS-C-linearis_contig83:620227..6205361622930620.6572518-CDS-C-linearis_contig83:620227..620536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 620228..620536 +
1690881163.4788258-CDS-C-linearis_contig83:620227..6205361690881163.4788258-CDS-C-linearis_contig83:620227..620536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 620228..620536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16068.1

>prot_C-linearis_contig83.16068.1 ID=prot_C-linearis_contig83.16068.1|Name=mRNA_C-linearis_contig83.16068.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=103bp
MLQQNDGSLRPINGVGEFAVVRACKKNVSWSLLSLSQMFFLSKTGGCRHL
LPNREGTRGGRAAPKTTCINIVREGVCALQCRVLQAGVAIELQSKPFTYS
AP*
back to top

mRNA from alignment at C-linearis_contig83:620102..620597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16068.1 ID=mRNA_C-linearis_contig83.16068.1|Name=mRNA_C-linearis_contig83.16068.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=496bp|location=Sequence derived from alignment at C-linearis_contig83:620102..620597+ (Chordaria linearis ClinC8C monoicous)
GCCTGGAGGGGAAAAAACACAACAAGAAAAACGAGAGAGAGCGCACGGTC
GATGAGCGAGGGTCAGGTGTGACACGCGGTACACGGGCGCTTACGACAAA
CAGTCTGTGGTGAGTGCTGTTCTTCGATGTTACAACAAAACGACGGAAGC
CTCCGACCTATCAACGGGGTGGGCGAATTCGCGGTCGTGCGAGCATGCAA
GAAAAACGTCTCGTGGAGTCTTCTTTCTTTGAGTCAAATGTTTTTCCTTT
CAAAAACGGGTGGGTGTAGGCATCTGCTACCGAATAGAGAAGGTACTCGT
GGCGGACGGGCTGCTCCAAAAACAACTTGCATCAATATAGTTCGCGAGGG
GGTATGTGCTCTCCAATGTAGGGTTCTGCAAGCGGGGGTTGCGATCGAAC
TACAAAGCAAACCATTCACCTACTCAGCGCCTTAGGCGTCGTTTCGAGCG
TTTTCTTCTCTCCGGCGCTGGATCAGTTCAATGCTCAATATTTGTA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig83:620102..620597+

>mRNA_C-linearis_contig83.16068.1 ID=mRNA_C-linearis_contig83.16068.1|Name=mRNA_C-linearis_contig83.16068.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at C-linearis_contig83:620102..620597+ (Chordaria linearis ClinC8C monoicous)
ATGTTACAACAAAACGACGGAAGCCTCCGACCTATCAACGGGGTGGGCGA
ATTCGCGGTCGTGCGAGCATGCAAGAAAAACGTCTCGTGGAGTCTTCTTT
CTTTGAGTCAAATGTTTTTCCTTTCAAAAACGGGTGGGTGTAGGCATCTG
CTACCGAATAGAGAAGGTACTCGTGGCGGACGGGCTGCTCCAAAAACAAC
TTGCATCAATATAGTTCGCGAGGGGGTATGTGCTCTCCAATGTAGGGTTC
TGCAAGCGGGGGTTGCGATCGAACTACAAAGCAAACCATTCACCTACTCA
GCGCCTTAGATGTTACAACAAAACGACGGAAGCCTCCGACCTATCAACGG
GGTGGGCGAATTCGCGGTCGTGCGAGCATGCAAGAAAAACGTCTCGTGGA
GTCTTCTTTCTTTGAGTCAAATGTTTTTCCTTTCAAAAACGGGTGGGTGT
AGGCATCTGCTACCGAATAGAGAAGGTACTCGTGGCGGACGGGCTGCTCC
AAAAACAACTTGCATCAATATAGTTCGCGAGGGGGTATGTGCTCTCCAAT
GTAGGGTTCTGCAAGCGGGGGTTGCGATCGAACTACAAAGCAAACCATTC
ACCTACTCAGCGCCTTAG
back to top