mRNA_C-linearis_contig83.16054.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16054.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI) HSP 1 Score: 940 bits (2430), Expect = 7.580e-288 Identity = 789/1532 (51.50%), Postives = 866/1532 (56.53%), Query Frame = 1
Query: 2269 ARSLLLPAAEEYGIRMGVRVGVFSSESVGEHFKFLRTAVDLDGSSLASISSFSLTRTLGDTRTVNPR--PRTPP------------------AATADGADAPEEGPEAGVPPFHPPTEPSERRIVGACFHELKARVMTVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTAGV---SEHASAGSDGIAADRGAHDSSQALLPADGAPGGFG---GERAEKRGVV------LEPWLLPLVTRPAGFLVEVDGAVVRAGHGRALGKRLDSLALQTKALAVALAEMPGRWHPLADGPCGDFHRLFWKPPVPEEAFVPSSPRPQDR--AWGNHLWLRARGVSFEVIDDPLEAWFEAMHPVWSRELAARVFRRALRERVGRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEDARSYLEHLQEAFGDHGPPAAFPLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPCLLRVRVGDVSLEATPPTAREGLCRSLLERLDQHPPPVGTDFGTIARLGFSLRCADMVTSLRRFDQPLFSCEGVSAGGVAMGVWARAPH---GGLAGVKYVVVGENEVA---------------VAXXXXXXXGGVGRVAVVTHDLPPKAYLDLSVCVNRPRFQYSPAHAFSLADMAKAAKLLLPPNLFPQVASGRKEATVGTGPGHRQTPPVYSVPPVTWWDAGRCMVHGKFDATVFGGVGILVANAAHCTSPSTRLPPRATLAXXXXXXXXXXXXXXXGGSNKFIRRGSFPLEDSTGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDSMGSFRSTSPPLPEYVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRAGGKEXXXXXXXXXXVEKSGLKELQRGKALMVTCVVLRVGWTGAGRVALEATGFGVEASPPPAPGLPPLLELPTLRCTIGVMWHTLGGPSPDHWVYLRPPQPSSSAGGALLPLSLPGAQPSGAATXXXXXXXXXXXXXXFQQGTSSSPGSKVGDAEDRGQPTKPAAXXXXXXXXXXXXXXXXXXXVDGRGXGERLKAAAEEGREGEEGAAAGGSCGAVQDAVGPTAGADXXXXXXXXXXXXARWDVRARDPFESFRGKGVSFQVRATLPNRPTGGILPPLPAGIELPESLTADLSRLPPRMSVSVFGCCLAWAVGWGTSFSKVPPVPIPRRKCRVPTSLGRPA----------GTAG----GSETGRRRKRFITHADVFCRLRRGAEGSTSSPSTRVGAVPVAASVADQTVGPANADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVGDRARGGSGGGHPGAVVVAARESFANLVRGFRLGPVFLSEVDVSAHDTAPADLGKRGVRLSIRGGVAASLCFSVEKSGAINPFKTGRVVIPTTSLVVTTVHGLRLRAGKIEAR 6666
A + P AEEYG+RM V V F SESVGEHFKFLRTAVDLDG LASIS+FS++RTLGDT ++P PR P AATA G E + VP F+ PTEPSERRIVGACFHELKAR M VA XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX G AG + + G G A A ++Q+ A G G G G RG V LEPWLLPLVTRPAGFLVEV+GAVVRAGHGRALG RLDSLALQTKALAVAL+EMPGRWHPL GPC DFHR+FWKPP+PEEAFV SS RPQDR AWG H+WLRARG++ E+ D+PLEAWFEAMHPVWSR+LAARVFRRAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEDARSYLEH+++ FGDHGPP AFPLP +P L+RVRVGDVS + TPP+ EGLCR LL+RLD+HPPPVGT FG +ARLGFS+RC+++VTSLR+FDQPLFSCE VSAGGVAM ARAP G L GVK VV+ E E A GG G+VAVVT DLPPK YLDLSVCV RPRF++SPAH ++LAD+A AA LLLPPNLFPQVA G + GTG G VPP+ WWDAGRCMVHGKFDATVFG +P+T P GG + G+ P + S SLP XXXXXXXXXXX DS GS RS+SPP PE VG XXXXXXXXXX XXXXXXXXXXXXXXX SR GL+ L++GK LMVTCVVLRVGW GAGRVALE TGFGVEASPPPAPGLPPL ELPTLRCT V WHTLGGPSPDHWVY+RP S XXXXXXXXXXXXXX SSPG+ R +P D G+ L A A AGG GA ++ VG G + QVRATLPNRPTG ESL +DLS LPPRMS SVFGCCL WAV WGT FSKVPPVP+PRRKCRVPTSLG P+ TAG GS T R+R + A VF RLRR AEG XXXXXXXXXXXXX + P +V +SFA+LVRGFRLGPVFL+E+D SA++TAPAD KRGVRLSIRGGVAASLCFSVEKSGAINPF TGRVVIPTTSLVVTTVHGLRLRAGKIEAR
Sbjct: 1436 APGTIFPDAEEYGVRMSVGVDEFLSESVGEHFKFLRTAVDLDGDCLASISTFSISRTLGDT-CISPATAPRGPSGETSRDDTGGAPGGAGPAAATASGLRGEEGATKHEVPSFYLPTEPSERRIVGACFHELKARAMAVAXXXXXXXXXXXXXXXXXXXXXXCTNQTPRPSXXXXXXXXXXDGAGVGDAGGGDSWSREWTA-----GTAAGARSSTRRSPVGDGGRTAAVNASSATQSSAGAGGQSVGSGDPPGGGRNNRGAVVGTTRALEPWLLPLVTRPAGFLVEVEGAVVRAGHGRALGNRLDSLALQTKALAVALSEMPGRWHPLRGGPCDDFHRMFWKPPIPEEAFVASSARPQDRQGAWGVHVWLRARGLALEIADEPLEAWFEAMHPVWSRQLAARVFRRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEREGDEEDARSYLEHVRDTFGDHGPPPAFPLPGAATATAARKKAAAAASPRPGVWGCEGGGTW------SPRLVRVRVGDVSADVTPPSGGEGLCRGLLDRLDRHPPPVGTGFGVLARLGFSVRCSNIVTSLRQFDQPLFSCERVSAGGVAMVACARAPPHSGGSLTGVKVVVIDEREAXXXXXXXXXXXRGRQHAAPSEVAGGGGRGKVAVVTRDLPPKVYLDLSVCVERPRFEFSPAHTYALADLASAATLLLPPNLFPQVAPGSR----GTGTGRDV------VPPLAWWDAGRCMVHGKFDATVFG-------------APATTAP---------------------GGGRPAGQSGTVPGSGNASPG------------------------------SSSLPTSSGHRLSWKSGGVWRRDRRGSXXXXXXXXXXXVDEGDSFGSMRSSSPPFPEVVGISGGGRRHSGPVGVXXXXXXXXXXAFGVGDXXXXXXXXXXXXXXX-SRG-----------------EGLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLRCTFVVAWHTLGGPSPDHWVYVRPTVSSXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXSSPGT-------RAEP-------------------------DPSTIGQDLSAVGGT-------AVAGG--GAREEGVG-----------------------------------GGAQQVRATLPNRPTGXXXXXXXXXXXXXESLVSDLSGLPPRMSASVFGCCLGWAVEWGTCFSKVPPVPVPRRKCRVPTSLGWPSPGTQTSATGGSTAGVGAVGSSTARKRA-SSSDATVFSRLRREAEGXXXXXXXXX-------------------------------------------XXXXXXXXXXXXXXQT------------PAVIVQPPCDSFADLVRGFRLGPVFLAEMDASAYNTAPADPHKRGVRLSIRGGVAASLCFSVEKSGAINPFTTGRVVIPTTSLVVTTVHGLRLRAGKIEAR 2721
BLAST of mRNA_C-linearis_contig83.16054.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE) HSP 1 Score: 488 bits (1256), Expect = 1.300e-136 Identity = 360/765 (47.06%), Postives = 407/765 (53.20%), Query Frame = 3
Query: 30 ASPPRETHRLRWLAIRKVAFRTGPV----AEPAASAGAVGRGTAAGKVSPSCPRVEGVEGAGEDGSLAVEGLWAEWSPALFFLAGKSGAM---------------------------------------VVSCLKGTGFLSTPASRSGLGCDPLQHWSPPQRTAAPT--SGEPSLGRKARSESGPTPWEGEGDGPCVSGPPRGFPGDALRLPPVGDPSRAADCFANKVFSAGCYPSSSRRRSPPPAAD---GPQLSDPGNALRQPRSSARGVGMGSSGRRAGESAVFGG------GGQGKRRNKAEVPKVFTLSVRDVRVEFPYQASGCPGDMEHGDVVRWLRRFRGPSRP----GGVADGV----------GAAEKSAQVVPGVRPPGR-NSVPAFAASGGRASEAAASVDSGLP-QDNSHALPWSCQYVEAREFDLSVAVSGTENADNIGGXXXXXXXXXXLLPHLSCAISGVSVSTAGYAPNGSDKSFYVGDYCGSGRRRSRSPDLGAKGHDTEEPSSSXXXXXXXXXXSVPLNVPPRSRSGGNAPEGRRCGAIFPGSPQGRGGGVGTRSGSSARISVTLGGTRHCPNSRKRFLRVSRFAVLQMVSADKAGGGRGGGGAAEAPGSRVVDILAEGVEGNWTPATHLKIIKPVREVTLSIWKTMLHLRRAWLAALPTPPQALGXXXXXDDGHRAFYPVDEVGGRDRDXXXXXXWERSPPWDDPAALEYWVRAWVAGGPSGPAGDTLHRLHARNVSLRGRWPVQP 2114
A+P RE+HRLRWLAIRK F TG E S G +G P AGEDG LAVEG+WAEWSPALFFLAG+SGAM +VS LK GFLS PA RSGLG DPLQHWSPP+ P+ + EP + D GPPRGFPGDALRLP +G SRAA CFAN+VFS G P P D P G+A R G G R K ++PK FT SVRDVRVEFPYQA CPGDME+GDVVRWLRRFR S GGV D G EK + PP R +S+PA AAS G + S LP +DN L WSCQYVEAREFD+SVAVSG G +LP+L+CAISGVSVSTAGYA G VGD G G RR+ S L A T P+ + + V +G A E G + PG P GR GG+G +S SSAR +V LGGTRHCPN+RKRFLRVS+FAVLQM S+D+ + GGG+A SRVVDILAEGV+G+WTP+ HLKIIKPVREVTLSIWK MLHLRRAWLA +L D+ VGG +R PPWDDPAALEYWVRAW AGGPSGPAGDTLHRLHARNV L+ WPVQP
Sbjct: 903 ATPRRESHRLRWLAIRKATFVTGGSRSGGGESVLSGGRRDSSGRSGVPVPPLAVAXXXXXAGEDG-LAVEGVWAEWSPALFFLAGQSGAMSVHLSCTETHEKLSHGGPYCDPVSPFFGSFFPAYLLVVKIVSSLKAAGFLSAPAFRSGLGYDPLQHWSPPRPAGMPSPDANEPVVA----------------DAAARRGPPRGFPGDALRLPAIGATSRAAACFANRVFSCGDMP--------PAVIDLLWRPSEERAGHAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGAAGGSRGKVKIPKAFTASVRDVRVEFPYQAGVCPGDMEYGDVVRWLRRFRCCSTTDWFGGGVPDAEPPRGEVGFSGGWGEKVRRDDDKPLPPRRCHSLPASAASSG-----GDAGSSHLPLRDN---LAWSCQYVEAREFDMSVAVSGXXXXXXXSG----------VLPNLNCAISGVSVSTAGYARGGG-----VGDGRGGGVRRTSSL-LEAAKRSTSSPTPTPGGALPPFEAAKARQVD--DGTGATAAEWGGGGNLSPGDP-GRRGGLGRQS-SSARFAVALGGTRHCPNTRKRFLRVSKFAVLQMFSSDR----QAGGGSA----SRVVDILAEGVDGHWTPSIHLKIIKPVREVTLSIWKAMLHLRRAWLAQ-----PSLSRGGSGDNASSV------VGG-----------DRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHARNVLLKALWPVQP 1584
BLAST of mRNA_C-linearis_contig83.16054.1 vs. uniprot
Match: A0A6H5KJB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB8_9PHAE) HSP 1 Score: 198 bits (504), Expect = 4.210e-49 Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1
Query: 6409 VRGFRLGPVFLSEVDVSAHDTAPADLGKRGVRLSIRGGVAASLCFSVEKSGAINPFKTGRVVIPTTSLVVTTVHGLRLRAGKIEARLCDRDAGSRGRLLLRLRRVTLAQGSGDRAT 6756
VRGFRLGPVFL+E+D SA++TAPAD KRGVRLSIRGGVAASLCFSVEKSGAINPF TGRVVIPTTSLVVTTVHGLRLRAGKIEAR+CDRDAGSRG LLLRLRRV LAQGSGD AT
Sbjct: 8 VRGFRLGPVFLAEMDASAYNTAPADPHKRGVRLSIRGGVAASLCFSVEKSGAINPFTTGRVVIPTTSLVVTTVHGLRLRAGKIEARVCDRDAGSRGSLLLRLRRVALAQGSGDVAT 123 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16054.1 >prot_C-linearis_contig83.16054.1 ID=prot_C-linearis_contig83.16054.1|Name=mRNA_C-linearis_contig83.16054.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1662bp MIRRRWSTGSVRGWPAGRRGLQATPCTGCTRGMSPSEAGGRSSPGRAPPTback to top mRNA from alignment at C-linearis_contig83:378308..396148- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16054.1 ID=mRNA_C-linearis_contig83.16054.1|Name=mRNA_C-linearis_contig83.16054.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17841bp|location=Sequence derived from alignment at C-linearis_contig83:378308..396148- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:378308..396148- >mRNA_C-linearis_contig83.16054.1 ID=mRNA_C-linearis_contig83.16054.1|Name=mRNA_C-linearis_contig83.16054.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9972bp|location=Sequence derived from alignment at C-linearis_contig83:378308..396148- (Chordaria linearis ClinC8C monoicous)back to top |