mRNA_C-linearis_contig83.16051.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16051.1
Unique NamemRNA_C-linearis_contig83.16051.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:350449..351367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size244
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16051.1prot_C-linearis_contig83.16051.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 350476..351367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.1503685-UTR-C-linearis_contig83:350448..3504751622930620.1503685-UTR-C-linearis_contig83:350448..350475Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 350449..350475 +
1690881163.2790334-UTR-C-linearis_contig83:350448..3504751690881163.2790334-UTR-C-linearis_contig83:350448..350475Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 350449..350475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.165105-CDS-C-linearis_contig83:350475..3504821622930620.165105-CDS-C-linearis_contig83:350475..350482Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 350476..350482 +
1690881163.2906983-CDS-C-linearis_contig83:350475..3504821690881163.2906983-CDS-C-linearis_contig83:350475..350482Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 350476..350482 +
1622930620.1833935-CDS-C-linearis_contig83:350642..3508241622930620.1833935-CDS-C-linearis_contig83:350642..350824Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 350643..350824 +
1690881163.3000202-CDS-C-linearis_contig83:350642..3508241690881163.3000202-CDS-C-linearis_contig83:350642..350824Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 350643..350824 +
1622930620.2031908-CDS-C-linearis_contig83:351340..3513671622930620.2031908-CDS-C-linearis_contig83:351340..351367Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 351341..351367 +
1690881163.3096392-CDS-C-linearis_contig83:351340..3513671690881163.3096392-CDS-C-linearis_contig83:351340..351367Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 351341..351367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16051.1

>prot_C-linearis_contig83.16051.1 ID=prot_C-linearis_contig83.16051.1|Name=mRNA_C-linearis_contig83.16051.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
MLCLESLSTKKCRAKRVMACCLRAHVCAWCCSGGPAAGSLHPLVLPRRLQ
TRLIILHRDGNRSANKADDSHR
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mRNA from alignment at C-linearis_contig83:350449..351367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16051.1 ID=mRNA_C-linearis_contig83.16051.1|Name=mRNA_C-linearis_contig83.16051.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=919bp|location=Sequence derived from alignment at C-linearis_contig83:350449..351367+ (Chordaria linearis ClinC8C monoicous)
CTGCGTGGCAAACTGCCCTACCGAGGAATGCTATGTGAGCTCTGCGCATT
GGCTCAAAGGTTCCTCCTTTTGCACCGGTACATACCATACGTAGAAGCAA
TCTTTCTTCCGCGGCTGGCCCGTGCACCAATTCCTTGAGTCTGAATGTGG
AATGGAATGTTCGTGTTTCATCCTTTCTTTTTCGATTTTCCAAGGCCTTG
AAAGCTTGAGCACCAAAAAGTGTCGTGCTAAACGGGTCATGGCCTGTTGC
CTACGTGCACATGTATGTGCGTGGTGTTGCTCGGGTGGTCCGGCGGCCGG
CAGTCTTCACCCTCTTGTTCTTCCGCGTCGCCTGCAAACCAGGCTCATCA
TACTTCACCGTGACGGCAACAGATCGGTGAGTGGTCCCACTCGAGCAAGT
CCGTAGTGCGTTGCACTAAGGCAGTTGTCACTACACCAGCACTACCGTAG
CAGTCCTGGCTGCTCTGCTCCTTGCTGCTGGTGTACGCCCGCAAGTCGCA
CACAGCCGCGCCTTTTCATAAAGTTGCAAACGCTGCTCTGAAGGAGAGGG
TGTTTTGAGTCGGGTTGCACCTTTTGGTGAAACGGGTACTGCTGTAGCTC
GTGTAAGAAATAGTTTTTCGGGAATCGGGCGTTGCGGCGTCGTGTGAAGC
GTGTTGTTGTTGGCAGCGGCGGTGGTTGCAGCAACACCGCGTTAAAAGGA
GGTGCGGTTCCCGCTGGCTTGGGCCAACGAGCACTGTTTTTGCGCTGGCT
GGCTGTTACCCCTTTGGGTGCCGGTGGGGATCGGCTCCACAATGCCAGCT
CCACGGCTCGACCAGGTTTCTTTTGTTTGCGGGATGTTGAGCTGCGTCCC
TTTCGTCGTGCCGGTTCTGGCGTGCCTCGTTTGACCACGCAGGCCAACAA
GGCAGACGATTCGCACCGT
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Coding sequence (CDS) from alignment at C-linearis_contig83:350449..351367+

>mRNA_C-linearis_contig83.16051.1 ID=mRNA_C-linearis_contig83.16051.1|Name=mRNA_C-linearis_contig83.16051.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig83:350449..351367+ (Chordaria linearis ClinC8C monoicous)
ATGCTATATGCTATGCCTTGAAAGCTTGAGCACCAAAAAGTGTCGTGCTA
AACGGGTCATGGCCTGTTGCCTACGTGCACATGTATGTGCGTGGTGTTGC
TCGGGTGGTCCGGCGGCCGGCAGTCTTCACCCTCTTGTTCTTCCGCGTCG
CCTGCAAACCAGGCTCATCATACTTCACCGTGACGGCAACAGATCGGCCT
TGAAAGCTTGAGCACCAAAAAGTGTCGTGCTAAACGGGTCATGGCCTGTT
GCCTACGTGCACATGTATGTGCGTGGTGTTGCTCGGGTGGTCCGGCGGCC
GGCAGTCTTCACCCTCTTGTTCTTCCGCGTCGCCTGCAAACCAGGCTCAT
CATACTTCACCGTGACGGCAACAGATCGGCCAACAAGGCAGACGATTCGC
ACCGTGCCAACAAGGCAGACGATTCGCACCGT
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