mRNA_C-linearis_contig83.16049.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16049.1
Unique NamemRNA_C-linearis_contig83.16049.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 3.930e-92
Identity = 155/304 (50.99%), Postives = 205/304 (67.43%), Query Frame = 3 
Query:  468 LGRLLCLLSVCAVGSDAIYAVSDPTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHEQSCLHAINGTNPVVVGYTELLRAVMADRGRQCDYFTIMRHPIDRLISAFFYCPEH-DAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            L R+ CLLS+ A+G DA+YA S+P  E P YCTL+NH VKS G+TIKDKL+ A+   G+  P +C+ G G+E SCL A++   PV+VGY ELLR  +   GR+C+YFT+MRHPIDRL+SAFFYCP + D Q RP +WCG A      T R LVEFAK  WKNKAFRQMT+ ++ P +AF E+    A Q   +P    L+  ++ IL +Y AVGI+++W+LSM+LFNAR+ SPV DW+          +  +N G    LR E+H WA  S EI   +ATD++LYD+++ VFK QT+ SLGT W
Sbjct:   98 LRRVACLLSLRAIGCDALYAWSNP-GEPPEYCTLFNHMVKSGGSTIKDKLDIAAKADGVDGPAMCVNGVGYEDSCLKAMHSA-PVIVGYAELLRYPLEVIGRECEYFTVMRHPIDRLLSAFFYCPAYGDVQDRPPKWCGYANDPQPVTDR-LVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQAEPGAQQAVHEPGGWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWE---------DMEHSNRGQRSGLRDEVHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQTSASLGTIW 389
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 4.300e-89
Identity = 142/302 (47.02%), Postives = 198/302 (65.56%), Query Frame = 3 
Query:  474 RLLCLLSVCAVGSDAIYAVSDPTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHEQSCLHAINGTNPVVVGYTELLRAVMADRGRQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            RL C+ S+  VGSD +YA S+P  E P YCT+++H VKSAG+T+K  L  A+   GL  P +C+ G     +CL AIN ++ ++ GY EL+R  +    R+CDYFT++RHPIDRL+SAFFYCP +HD Q RP++WCG A      T+R L++FA+ +W+NKAF+QMT+ ++ P D F +   + +PQ  D+P  + ++  VQ  L  Y AVGIM+HW+LSM+LFNAR++SPVR+W +  Q          N G+   LR E+  WA  S  I   + TD++LY FAL +FKQQT  SLGT W
Sbjct:  119 RLACVFSLLVVGSDTLYARSEP-GEPPEYCTVFHHMVKSAGSTVKSLLHRATRNEGLPRPAVCINGHARTDACLEAIN-SSAIITGYAELIRYPLEVNRRECDYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHAEHPVPATER-LLDFAQESWQNKAFKQMTFGLYCPPDTFCDEAEVESPQMLDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQR---------NPGVMSGLRDEVLQWAHESPAIHRVIGTDMLLYYFALSIFKQQTTASLGTNW 408
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 4.370e-83
Identity = 144/305 (47.21%), Postives = 194/305 (63.61%), Query Frame = 3 
Query:  474 RLLCLLSVCAVGSDAIYAVSDPTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHE-QSCLHAINGTNPVVVGYTELLR--AVMADRGRQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            RL  +LS+  VGSD  YA S+P  + P YCT+++H VKS G+TIK  L  +S  AG   PG C+ G G    SC  A N ++ V++GY EL+R    +    R C+YFT++RHP+DRL+SAFFYCP +HD Q RP +WCG A      T R L+EFA+ +WKN A++QMT+ ++ P     E T +      D+P  + ++  V+ IL  Y AVGIM+HW+LSM+LFNAR++SPVRDW +           R+NAG+  ELR E+  WA  S  I   +ATDL+LY FAL +FK+QT ESLGT W
Sbjct:   13 RLASVLSLLVVGSDTFYARSEP-GQPPEYCTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAGGGKRINSCKEAFN-SSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATDR-LLEFAQQHWKNMAYKQMTFGMYCPHGLICEATEVETAPGLDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTV---------RSNAGLPSELRDEVLQWAHDSPVIHRLMATDLLLYSFALSIFKRQTTESLGTNW 305
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 8.770e-77
Identity = 134/301 (44.52%), Postives = 189/301 (62.79%), Query Frame = 3 
Query:  486 LLSVCAVGSDAIYAVSDPTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHE-QSCLHAINGTNPVVVGYTELLRAVMADRG--RQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            +LS+  VGSDA YA S+P  + P YCT+++H VKS G+TI          AG   PGLC+ G G +  SC  A N ++ V++GY E +R  +      + C+YFT++RHP+DRL+SAFFYCP EHD Q RP +WCG A      T R L+++A+  WKN A++QM + ++ P     E T +      D+P  + ++  V+ IL  Y AVGIM+HW+LSM+LFNAR++SPVR+W +  QH        +NAG+  ELR E+  WA  S  +   +ATD++LY FAL +FK+QT E+LGT W
Sbjct:   17 VLSLLVVGSDAFYARSEP-GQPPEYCTVFHHMVKSGGSTIXXXXXXXXXSAGDPRPGLCVAGGGEKTNSCKEAFN-SSAVIMGYAEAMRQDVPLEAVRKDCEYFTLLRHPVDRLVSAFFYCPKEHDVQSRPPKWCGYADHPLPATDR-LLDYAQQYWKNMAYKQMAFGMYCPHGLICEATEVRTAPGLDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVREWNIT-QH--------SNAGLPSELRDEVLQWAHDSPVVHRLIATDMLLYSFALSIFKRQTTEALGTNW 305
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: D8LHT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT4_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.040e-72
Identity = 131/298 (43.96%), Postives = 179/298 (60.07%), Query Frame = 3 
Query:  507 GSDAIYAVSDPTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHEQSCLHAINGTNPVVVGYTELLRAVMADRGRQCDYFTIMRHPIDRLISAFFYCPE-HDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAP-------QDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            G  AIY  +    + P YCT+++H VK+ GT ++D+L  AS   G   PGLC+ GP   ++CL A++ ++ V++GY ELLR  M + GR+CDYFT+MRHPIDRL+SAF+YCP  HD Q RP +WCG        T R L++FA+ +W  KA  Q+++  + P  AF E  ++  P       +DW       L+ V + +L SY AVGI + WELSMELF+A I SPV+ W          G    N G     R  +  WA +S EIR A+  DL+LYD AL +FK+QTAE+LGT W
Sbjct:   11 GCQAIYTRASMDTDPPTYCTMFHHMVKNGGTAVRDQLILASEIQGRDVPGLCVIGPSSAEACLDALHHSS-VIMGYVELLRDPMEELGRRCDYFTMMRHPIDRLVSAFYYCPTFHDKQVRPNKWCGGHSHPDPLTSR-LLDFAREDWMCKAMFQLSFASYCPPGAFCEHDMVEEPPTHLNGVEDWS------LLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWG---------GEEAVNPGPKSSEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVW 291
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.410e-66
Identity = 110/243 (45.27%), Postives = 157/243 (64.61%), Query Frame = 3 
Query:  657 LCLFGPGHEQSCLHAINGTNPVVVGYTELLRAV--MADRGRQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            +C+       +CL AIN ++ ++ GY EL+R V  +    R+C YFT++RHPIDRL+SAFFYCP +HD Q RP++WCG        T+R L++FA+ +W+N+AF+QMT+ ++ P D F E   + +PQ  D+P  + ++  VQ IL  Y AVGIM+HW+LS++LFNAR++SPVR+W V+ Q          N G+   LR E+  WA  S  I   + TD++LY F L +FKQQT  SLGT W
Sbjct:   22 VCINEQDRTNACLEAIN-SSAIITGYAELIRRVYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATER-LLDFAQESWRNQAFKQMTFGLYCPPDTFCEEAEVDSPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVREWNVSKQR---------NPGVMTRLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 253
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 3.290e-55
Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 3 
Query:  771 RQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVL----------------------AAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            R+C YFT++RHPIDRL+SAFFYCP +HD Q RP++WCG        T+R L++FA+ +W+N+AF+QMT+ ++ P D F E   +                        PQ  D+P  + ++  VQ IL  Y AVGIM+HW+LSM+LFNAR++SPVR+W V  Q          N G+   LR E+  WA  S  I   + TD++LY F L +FKQQT  SLGT W
Sbjct:   12 RECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATER-LLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVREWNVFKQR---------NPGVMTGLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 226
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: D7FUF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF7_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.220e-34
Identity = 69/145 (47.59%), Postives = 90/145 (62.07%), Query Frame = 3 
Query:  942 WKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEIRAALATDLILYDFALDVFKQQTAESLGTKW 1376
            W+N AF+QMTY ++ P +A      L APQ  D+P  + L+  V+ IL  YAAVGIM+HW LSMELFNAR++SPVR+W    Q          N G+   LR ++  WA  +  I   L  D++LY FAL +FKQQTAE+LGT W
Sbjct:    2 WQNLAFKQMTYGLYCPPEAICGEMQLDAPQMVDEPGGLDLLQQVEDILAGYAAVGIMEHWGLSMELFNARVRSPVREWNRFKQ---------KNPGVTSGLRDQVLQWAHENPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 137
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: D7FJX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 9.410e-32
Identity = 66/129 (51.16%), Postives = 84/129 (65.12%), Query Frame = 3 
Query:  795 MRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSMELFNARIKSPVRDWK 1178
            MRHPIDRL+SAFFYCP + D Q RP +WCG A      T R LVEFA+  WKNKAFRQMT+ ++ P +AF E+                     +GIL +Y AVGI+++W+LSM+LFNAR+ SPV DW+
Sbjct:    1 MRHPIDRLLSAFFYCPADGDVQDRPTKWCGYANDPQPVTDR-LVEFAEYGWKNKAFRQMTFGLYCPPNAFCEQA--------------------EGILATYTAVGILEYWDLSMQLFNARVTSPVWDWE 108
[Close]
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Match: A0A6H5JQY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.290e-28
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  657 LCLFGPGHEQSCLHAINGTNPVVVGYTELLRAV--MADRGRQCDYFTIMRHPIDRLISAFFYCP-EHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFPPQDAFRE 1007
            +C+ G     +CL AIN ++ ++ GY EL+R V  +    R+C+YFT++RHPIDRL+SAFFYCP +HD Q RP++WCG        T+R L++FA+ +W+N AF+QMT+ ++ P D F E
Sbjct:   22 VCINGHDRTNACLEAIN-SSAIITGYAELIRRVYPLEVERRECEYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATER-LLDFAQESWQNMAFKQMTFGLYCPPDTFCE 139
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT32_9PHAE3.930e-9250.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K0_ECTSI4.300e-8947.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT23_9PHAE4.370e-8347.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I1_9PHAE8.770e-7744.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHT4_ECTSI5.040e-7243.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K0M4_9PHAE2.410e-6645.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF0_9PHAE3.290e-5544.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF7_ECTSI3.220e-3447.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJX1_ECTSI9.410e-3251.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQY1_9PHAE1.290e-2846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:341497..348598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog2880.D7G716
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2213
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.9051883-UTR-C-linearis_contig83:341496..3423301622930622.9051883-UTR-C-linearis_contig83:341496..342330Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 341497..342330 -
1690881164.5121963-UTR-C-linearis_contig83:341496..3423301690881164.5121963-UTR-C-linearis_contig83:341496..342330Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 341497..342330 -
1622930623.0639985-UTR-C-linearis_contig83:348212..3485981622930623.0639985-UTR-C-linearis_contig83:348212..348598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 348213..348598 -
1690881164.6099029-UTR-C-linearis_contig83:348212..3485981690881164.6099029-UTR-C-linearis_contig83:348212..348598Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 348213..348598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.924903-CDS-C-linearis_contig83:342330..3424561622930622.924903-CDS-C-linearis_contig83:342330..342456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 342331..342456 -
1690881164.5292637-CDS-C-linearis_contig83:342330..3424561690881164.5292637-CDS-C-linearis_contig83:342330..342456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 342331..342456 -
1622930622.945651-CDS-C-linearis_contig83:344013..3440881622930622.945651-CDS-C-linearis_contig83:344013..344088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 344014..344088 -
1690881164.5384707-CDS-C-linearis_contig83:344013..3440881690881164.5384707-CDS-C-linearis_contig83:344013..344088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 344014..344088 -
1622930622.9636617-CDS-C-linearis_contig83:344823..3449011622930622.9636617-CDS-C-linearis_contig83:344823..344901Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 344824..344901 -
1690881164.5483837-CDS-C-linearis_contig83:344823..3449011690881164.5483837-CDS-C-linearis_contig83:344823..344901Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 344824..344901 -
1622930622.9808474-CDS-C-linearis_contig83:345212..3454381622930622.9808474-CDS-C-linearis_contig83:345212..345438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 345213..345438 -
1690881164.559824-CDS-C-linearis_contig83:345212..3454381690881164.559824-CDS-C-linearis_contig83:345212..345438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 345213..345438 -
1622930623.003383-CDS-C-linearis_contig83:346271..3464911622930623.003383-CDS-C-linearis_contig83:346271..346491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 346272..346491 -
1690881164.5700295-CDS-C-linearis_contig83:346271..3464911690881164.5700295-CDS-C-linearis_contig83:346271..346491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 346272..346491 -
1622930623.023586-CDS-C-linearis_contig83:347043..3471161622930623.023586-CDS-C-linearis_contig83:347043..347116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 347044..347116 -
1690881164.5824842-CDS-C-linearis_contig83:347043..3471161690881164.5824842-CDS-C-linearis_contig83:347043..347116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 347044..347116 -
1622930623.0442703-CDS-C-linearis_contig83:348017..3482121622930623.0442703-CDS-C-linearis_contig83:348017..348212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 348018..348212 -
1690881164.5968807-CDS-C-linearis_contig83:348017..3482121690881164.5968807-CDS-C-linearis_contig83:348017..348212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 348018..348212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16049.1prot_C-linearis_contig83.16049.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 342331..348212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16049.1

>prot_C-linearis_contig83.16049.1 ID=prot_C-linearis_contig83.16049.1|Name=mRNA_C-linearis_contig83.16049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=331bp
MGDQISDSDSEMVEQKKQAERLPRRHRLGRLLCLLSVCAVGSDAIYAVSD
PTAEVPAYCTLYNHQVKSAGTTIKDKLETASLEAGLSTPGLCLFGPGHEQ
SCLHAINGTNPVVVGYTELLRAVMADRGRQCDYFTIMRHPIDRLISAFFY
CPEHDAQYRPKEWCGQAGADSVQTQRYLVEFAKNNWKNKAFRQMTYNIFP
PQDAFRERTVLAAPQDWDQPATVKLMPVVQGILGSYAAVGIMQHWELSME
LFNARIKSPVRDWKVAPQHLAHLGVHRANAGIYHELRHEIHDWARTSTEI
RAALATDLILYDFALDVFKQQTAESLGTKW*
back to top

mRNA from alignment at C-linearis_contig83:341497..348598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16049.1 ID=mRNA_C-linearis_contig83.16049.1|Name=mRNA_C-linearis_contig83.16049.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7102bp|location=Sequence derived from alignment at C-linearis_contig83:341497..348598- (Chordaria linearis ClinC8C monoicous)
CATGGATACAAGTAGACTGTCAGTGTGTGCGTCCCAGTCCTAGTCCCCGC
TATACCTTCGGCACAATAATTGGTAACTAAGCGCGCAGGTGCGGTCCCAC
GGCAGGAACATCAGCTGCCGGGAGAGGAACGGGCCGGCGCGGGTGCTCCG
GACGTACCTACCTCTGGTGGGGACGAGGCCAGAACACACACCTGCAACTC
AAGCACTCAAGTCTCGCCGCACCAAACAGCCGGAGTCTGAGTTGGATAAG
CGTTCTTTGCGAGCCGAGTGACGCGCGAAGACATTTTTGCGGAGGGCCTT
CTGCGCTGCTACTTCTGCTGCTGCTACTTCGCCCAAGCTTGGCGTGGTCC
ATCCAAGGTCCTATCTCTCCTCCCCAGAGACGGGTTATGGGTGATCAAAT
ATCTGATTCTGATTCTGAGATGGTCGAGCAGAAGAAGCAGGCGGAGAGAT
TACCCCGCCGCCACAGATTAGGCAGACTCCTCTGCCTCCTCTCTGTGTGT
GCGGTCGGAAGCGACGCTATCTACGCAGTGAGTGACCCCACCGCAGAGGT
GCCGGCGTATTGTACTCTGTACAACCACCAGGTGAGAAATGGACCCAAGG
TGTAAAGCAGCATCCGCGAAAGACGTTCTTCTAGCCCGTACAGCCAGTAG
TACGGGTTACCAAACGTTAGAAGGGATCTTCCTTTGCTGAAACATCTTGG
TTGTAGAAGGCAAGCTCGAAGCTCGGGTTCGGACATCAACAAAATTGGTT
CTAAATGTTAATCTTCCATGGATTGAAATGTGGCTTCGGCCCTCCGACCT
ATGCATAGCCCTAGCCAACGCCCTGTGACCTAGAACTTAACCAACGGCCC
CTAGATGGGTGGTCTGCCATCCGTGAGCGTCAGGGTTAGGGTTAGAGTTG
GGTGGGTTGGGTCGGGTCGGAAAAAAGAAAAAGGGTCGGAAAAAAAAAGG
AACCGGGTCGGAATTGAACCCCGTTGATGCTCTGTACGAAATAGCGTGCT
CTGTCCGGAACACCACCGGGTCAACAGCGGCCGCCTCCTCCCCACCGCCT
CCTCCCCACCCAACGACCGCTGTCCGGTACACCACTGGGTCAATAGCGGC
CGCCTCCTCCCCACCCACCGACCGCGTATTTCTCGGGGTATCAACTACAA
CCAATTAGCATAGGAAGATCCTTTCTAACGTTTGGTAATCCGACCTCATA
AAAGTACAGCAGTATATAGAGGGCCAGTACAGGGGTGTGTCCAGAGATTT
TACCTCCACTTTGTATTAGTTTTCCCATAAATTTAGCATGTACCGCTTGC
CGCATCTCGCACGCTCTCGCTTCAACCTTCAACATTTTCGAAATCCCGCA
GCGCAGGCGAACGAACAATCGGCAAAACATAGTGCACAAAAAATGTTGAA
CACTTTCTTCTTGACCGACGCTTGCGGTGTGTGACAACAACATCCCCTTT
TTATGCGCTATCTTCAATTTGACATGGGACAGGTCAAGAGCGCGGGCACA
ACCATCAAGGACAAATTAGAAACAGCCTCCTTGGAGGCCGGCCTGTCGAC
ACCAGGTGAGGTTCCCATGGTTCCGATGGTTGCCCTTGTTCTCTACCTGG
TATGTAAATGTGCCTTTTTCATTTCATGCAGTGTTTTTAGTGTTCCTTAC
CCATTTATTTTATGTTGGGCTCTCCTTTGTTTTGCAACGCATGTACGGTC
GTGTGCAGAGAGAGATGACGGAGATAATATCCGACAAATATGAGGAGCGT
GTTCCACCATTCGACAGTTCGCATGTTGACCACAGCTAGCTCCTAGCTGT
TCGAAAAGTCGACACTCTTCTGAAACACGCTCAATTGTTGTGATGTGTTC
ACTGCAGTGTTGATAGCTAGCTATTGACCCGACGTATTCCAAAGTGTCCG
TGCAGAAACCGTTTTATCGACTCGATTTGACGAGGAACGTTTCCTTCAAA
CCGAATCATCTACTACGCTCTACGGTAGACGAAAGTAACTTTCTGCCGGC
GGCGTGGTCTCACTTTTCATTCGTTTCAAACGCCGAGCCCGTGCCGTTAT
TGTTGTTGGTGGGGATGGTTGTGGCCTCTTTCTCCTCCTTCTCCTACGGC
ATGTCAGGGCTGTGCCTGTTCGGACCGGGACACGAACAATCATGTCTCCA
CGCAATCAACGGGACCAATCCCGTGGTCGTGGGGTACACGGAGCTTCTGC
GAGCGGTGATGGCGGACAGAGGTCGACAGTGCGATTACTTCACCATCATG
CGGCATCCTATCGATCGACTCATCTCTGCTTTTTTTTACTGCCCTGAGCA
CGATGCGCAGTACAGACCAAAAGAATGGTGAGTCATGTTATGTGTCACGA
AGTATTACTACATGTCGAACAATGGCGGTAGTCTACGCAGGTTTCCAGTA
CGAAAACATGAGGGATAAAGTATGGAATCGGCTAATTGGGTGGGTCGGTG
GTTGGGTTAGGGTTAGGGTTAGGTTACGGAGCCCCTGTACTCTAAATCAC
AGATATAGCGTAAATTTCTTGCGTAGGCAGTCCAACAATGAAGGGGGGCG
GGGGGTTAAAATGGAGGGGATGGTGGCTTGAGACTGTAAAGTACATGAGG
TATGTATCTCATCCGCTCCTGAACCATTATCATCCCCTTATGCTGATCAA
GAAGCACTCTGTTGGGTTTGGCTGCGATGCGTCTTTCACCGAATGAGATC
GTGGTAGACGTTGGATGGCTTGTAGATAGGTAGGTACACATCGATTTGGA
GCCGGCGTACGGCCGAAGGGTGCTTTGCCATACCTACCTGCCCTATGACT
TCGACCCACATCACCCCCCCCCTCGCCAGAGGCAGCACCAGCCCGCGCGT
GGTCGACGCATCGATTGGCTCTGGGAAAGCAACAAACGGCAATGACACCG
ATCAGAGTTTTGGCGCGAAAGCATGAGCGCCCGGAACTCCCGACATGATA
GCCCTCGTGCCGTCTCACCCGGCGACATCGAAGTGGACACCATATCTTCA
ACGTTTGTTTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCGCAAAATTA
TATGCTTGGTACCATACAATGTCGTTTTTCCGGTTTTCCTCCTGTTTTCT
TCCCTCTTCCCGCCAAAAGTGACGACAAGTTTTTGCGCGCTATTTTCGTT
TTGTCAACAGGTGCGGGCAGGCGGGGGCAGACTCGGTCCAAACCCAGCGA
TACCTCGTCGAGTTCGCCAAGAACAACTGGAAAAACAAGGCGTTTCGGCA
GATGACGTACAACATATTCCCCCCTCAGGATGCGTTTCGGGAGAGAACAG
TGCTAGCCGCGCCGCAGGACTGGGACCAACCAGCGACGGTGAAGCTGATG
CCAGTGGTGCAAGGAATCTTGGGCAGCTACGCCGCGGTGTGTGTGTACTT
GATCGTAGCGGTGAAGAGAAGCGCTGCGTCCTGTGACGATGCTTAGCGTT
CCTGGAAAATGGCACATCGAGAACCTACAGGAAGCTCCCCCCTTCGTACA
GAGAGCTGTTGTGTTGTTCTACCTGATCTGTGGATTTATGTAGTACCTTT
CGATATTTGTTGAGCGGAAGGGTCTTTCTGACATGCAAGCGAGGTTTCCC
GTTGCAGCCTCCTGCGCAGCTTCGTCCTATTCGGGTGTGTATTTTGATCC
TGCCGCATCTCTTCTTCGACGCGTCTCGCACTATGCGGTATAATCAGGTT
GGCATCATGCAGCACTGGGAACTCAGTATGGAACTCTTCAATGCGCGCAT
CAAGTCCCCCGTTCGCGATTGGAAGGTCTGTCGTACATACGCTTCAAACG
AACCCAATGCGCGAGCGAAATATGCGCCACCACACTCGTCGCAACGTTTT
GCTGCTATACGGCGTCACCTGCTGATTTTTCTCCGCTCTCTCTGTTTCTG
TAGGTAAAGGAGTAGCACAGCGCCGCTGTTGTTGCAACATATCATTGCAC
CGCTGTTGTAGCATTTTTTGTACCGTGTAAAACTCCCAATTCCAACATGA
CGACCGCAGTCTCCCACAACTCGACATTTACGTACACATACATACGAAGT
ATGGGTCAAGTGTGAAACACCAAATCCTGCACCAAGCGCCCAGGTTCCGT
ATGTATGTGCAGTACTTCGATGAAAAGCTTGTGCTGGGAGGGCAATGGAT
ACAACCTTTAACCTTTTCCCCGAGCAAAATGCCCAAACCCTAAAGGGTGA
CGTTTGTTTGTTGTCTCCGGGCTTTGTTGTACACAGGGTTAGATTGTCCT
ATTCCAGCAACGAATCGCCGACGAGCCTATTCTGGCCCATAAACGATGGA
AAATAGACTTGCTCGACATGGGGGATCAGTTTTATTTTTTGCGGACCGGG
CGGATTGTCATGGCAACCGGCGAATACATTTTGCGGCCTTCTCTTTGTAA
CATCCATTCATCCATCCATGTGAAACACGAACGTGAAAGAAACGCACGCC
TCCCCCCCCCCACTGACTGTGTCTATCCTGTCCACATGCACGACTGGACT
GCATGCACAGGTCGCACCCCAGCACCTTGCTCATCTAGGAGTTCACAGGG
CCAACGCGGGAATTTACCACGAGCTCCGACATGAGGTGAACGGTTGAGAG
ACGAGATGATGATTTGTGAAATGCACTCGGAGCAGCGTATGTTTAGTTAC
AGTTGATATGGGCCCCCAGAATTTCAAGCCCCGCCCCCACGAACGAACTG
AACGCGTACGGTTATGGTCGGTCCTGTGCTGTTGCTGCCTGTGTCCACAT
ATATATTAAGCCGTCTCCCACTGGTTGGCGAGCGAGCATGAACTTGCCCG
TCACTCTGGGAAATCTAAATCTCTGACGATGCCTCCACAGCAGTAGTACC
GGCCCGCTCATGTGTGTTTTCGTCCCATTTATTTTGGCGACAGCCCCTTT
CCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTA
CACTTGTTCAGTGTATTTTTCTGTACAACTAGAACTAACCGGGGTCACAC
AGGAGGGGTACACTGGCATTTTCCTTCTTTTTATGTTTCTTTTTTGCCCC
ACCTTCCTCCTGCGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGTGT
AGCCATCCTTTTCCCTCGTCAACGTGCTAAGTCGAAGTTTGGTGTTATCG
CTTTCACCTGCAAAGTCGCAAAATAATCACCTTTGTTTGGAATTGAACGC
CAGACTTTGCTGCTAGTGGATTCGAGGTTAAACCACTATTCCACCGGGGC
GACCGAGTTCATAAGAAACGCAATTAATTCATTAATTCAAGAAACAAACA
AACGTGGGCCTCAGATGTTTCATAACTTTTGAAACGGCCGAGGCTCGGCA
TCTGGTGCAACATAAGAAATACGTACTCCTCCACTACTCCTCCACTAGCT
GGCACCTGGCGACCCCACTCTACCCCGACGAGCACAGCTCGGCCCATGCA
CACGATGTGCAGAGCTACATAGTTTTACCCAACCCAACCCCCCCCGTTTT
TTAGCGCTGCGAGCGGTCGAAATGTCGTCGGTTTGTGGGGCGTCGTCTGC
GTAAATTAGTACTTCTCTGAACCGCGAAAGCATAAACAATGAATGCCATT
GTACATTAACATAAGATATGGATGTAGCTTGAAATCGTCTTTCGGTGGCC
GAGACAAGCACGTGTGGTTCCTCGCTTGGAATTACACACGGCCGAAATTT
CAGTTTCATATGAAGCGTGTCGTTGAGATGGTGGGCGGTCGTGCCAATCA
GCTGGTGGGAAGGATGGAAGATCGCTGCACGCCCGCCGGTCGATAAATAT
ATGCGTCCAAATCCACCCCCACCTATGTACCACGCCGATTTTTCTACCCT
TTGCGGCATCGGCGCAGCAGCAAGTGGGGGGGTGGTAGGTTTCGTTCCTT
GCTTCATTCTTACGCAGGTAGGTTGGTTTCCGTAGACTATTACTATTATT
ATTTTGTGTAGTCTACATCACGAAATCATTCAAGGGACGCTCTTTTTTGC
GGACTTCACTGAAGGATTTCTGCCAGCAGTACCTTCGTCTTTGTCCTGCC
ACTATTCGTACACACAGCTAAACCCCCCCCCTTCCCCCTCCCGTAGATAC
TAATTTTGCTTTTTTTTTTTTGCTTCCTGCGGTGATGACCAGATTCACGA
CTGGGCACGGACAAGCACGGAAATTCGCGCCGCGCTGGCGACAGACCTCA
TCTTGTACGACTTCGCGCTTGACGTGTTCAAGCAGCAGACCGCTGAGTCG
CTCGGTACGAAGTGGTAGTCCTTTGGGTTTCGTCCGATTGTTGGTGGAGA
CGCGCAGACCATGCGAAGGAGGCACTTCTCCATGATGACCGACACCAGCA
GTAGTACTGATACTACTGTAGTAGCAAAACAACGGCGGCGGTGTCGGGTG
GACTTTTTTGCTGCGGTGGATGTAGGATGATCCAACGACAGCATGCGGAT
TGAGAGCCCCATGCGTTGGTGTTCATGCTTGGAAGCGGTATCGCGGGGCG
GGCTGCCTCGCCGAAAGTTGAGAGCGCAGCGTCGCTCGCTGACTAGTAGT
CTACTCGTCATCGTGCTGTACGTATTGTGTCGATCACCCAACCAAGCGAT
ACTTGTGAAATAGCGTAGACACTCTTTGGGCACACACACGGGATGGCGTC
CCACGACACCACACTACTACTAGTAGCCAGTGGCAGCCCAATCAATGTGG
GCACGCAATGTTGCTCCCGTTTTGTTGTCGTTCGTGTGGTGTCGTTGCTA
CATAGGTATATTTTTTGTCCTTGCCAACGCTGTCCGTGGTCTTTGGGGGT
TGCAAAGAGCGAAGCAGACGCGAGGAAAAAAACGCTGAAAAAGTAGAGGG
GAGAATGGCGTGGAACAGGAAAAATCACTCCTCCTGTCTGTCTGTGCCTG
CTGCTGCTGCCATTTGACAGCTAGCTGCAGCGACGCACCATGGTGCCGTT
TTGTAGTTAATCCATTAGACTAGTCTATCGCCTTTTGATATTTGAATATA
GTGGGGCGGGGCTGCTTCCCAGCTTCCTGTGATGTTTTTGTTGCCGGAAA
AGGGCCGTGAGGAGATAAAAATAGAGATTATTGTGGGTCTGGCGACGCAA
AG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig83:341497..348598-

>mRNA_C-linearis_contig83.16049.1 ID=mRNA_C-linearis_contig83.16049.1|Name=mRNA_C-linearis_contig83.16049.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at C-linearis_contig83:341497..348598- (Chordaria linearis ClinC8C monoicous)
ATGGGTGATCAAATATCTGATTCTGATTCTGAGATGGTCGAGCAGAAGAA
GCAGGCGGAGAGATTACCCCGCCGCCACAGATTAGGCAGACTCCTCTGCC
TCCTCTCTGTGTGTGCGGTCGGAAGCGACGCTATCTACGCAGTGAGTGAC
CCCACCGCAGAGGTGCCGGCGTATTGTACTCTGTACAACCACCAGATGGG
TGATCAAATATCTGATTCTGATTCTGAGATGGTCGAGCAGAAGAAGCAGG
CGGAGAGATTACCCCGCCGCCACAGATTAGGCAGACTCCTCTGCCTCCTC
TCTGTGTGTGCGGTCGGAAGCGACGCTATCTACGCAGTGAGTGACCCCAC
CGCAGAGGTGCCGGCGTATTGTACTCTGTACAACCACCAGGTCAAGAGCG
CGGGCACAACCATCAAGGACAAATTAGAAACAGCCTCCTTGGAGGCCGGC
CTGTCGACACCAGGTCAAGAGCGCGGGCACAACCATCAAGGACAAATTAG
AAACAGCCTCCTTGGAGGCCGGCCTGTCGACACCAGGGCTGTGCCTGTTC
GGACCGGGACACGAACAATCATGTCTCCACGCAATCAACGGGACCAATCC
CGTGGTCGTGGGGTACACGGAGCTTCTGCGAGCGGTGATGGCGGACAGAG
GTCGACAGTGCGATTACTTCACCATCATGCGGCATCCTATCGATCGACTC
ATCTCTGCTTTTTTTTACTGCCCTGAGCACGATGCGCAGTACAGACCAAA
AGAATGGGCTGTGCCTGTTCGGACCGGGACACGAACAATCATGTCTCCAC
GCAATCAACGGGACCAATCCCGTGGTCGTGGGGTACACGGAGCTTCTGCG
AGCGGTGATGGCGGACAGAGGTCGACAGTGCGATTACTTCACCATCATGC
GGCATCCTATCGATCGACTCATCTCTGCTTTTTTTTACTGCCCTGAGCAC
GATGCGCAGTACAGACCAAAAGAATGGTGCGGGCAGGCGGGGGCAGACTC
GGTCCAAACCCAGCGATACCTCGTCGAGTTCGCCAAGAACAACTGGAAAA
ACAAGGCGTTTCGGCAGATGACGTACAACATATTCCCCCCTCAGGATGCG
TTTCGGGAGAGAACAGTGCTAGCCGCGCCGCAGGACTGGGACCAACCAGC
GACGGTGAAGCTGATGCCAGTGGTGCAAGGAATCTTGGGCAGCTACGCCG
CGGTGCGGGCAGGCGGGGGCAGACTCGGTCCAAACCCAGCGATACCTCGT
CGAGTTCGCCAAGAACAACTGGAAAAACAAGGCGTTTCGGCAGATGACGT
ACAACATATTCCCCCCTCAGGATGCGTTTCGGGAGAGAACAGTGCTAGCC
GCGCCGCAGGACTGGGACCAACCAGCGACGGTGAAGCTGATGCCAGTGGT
GCAAGGAATCTTGGGCAGCTACGCCGCGGTTGGCATCATGCAGCACTGGG
AACTCAGTATGGAACTCTTCAATGCGCGCATCAAGTCCCCCGTTCGCGAT
TGGAAGGTTGGCATCATGCAGCACTGGGAACTCAGTATGGAACTCTTCAA
TGCGCGCATCAAGTCCCCCGTTCGCGATTGGAAGGTCGCACCCCAGCACC
TTGCTCATCTAGGAGTTCACAGGGCCAACGCGGGAATTTACCACGAGCTC
CGACATGAGGTCGCACCCCAGCACCTTGCTCATCTAGGAGTTCACAGGGC
CAACGCGGGAATTTACCACGAGCTCCGACATGAGATTCACGACTGGGCAC
GGACAAGCACGGAAATTCGCGCCGCGCTGGCGACAGACCTCATCTTGTAC
GACTTCGCGCTTGACGTGTTCAAGCAGCAGACCGCTGAGTCGCTCGGTAC
GAAGTGGTAGATTCACGACTGGGCACGGACAAGCACGGAAATTCGCGCCG
CGCTGGCGACAGACCTCATCTTGTACGACTTCGCGCTTGACGTGTTCAAG
CAGCAGACCGCTGAGTCGCTCGGTACGAAGTGGTAG
back to top