mRNA_C-linearis_contig82.16038.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16038.1
Unique NamemRNA_C-linearis_contig82.16038.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:866831..867677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size485
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16038.1prot_C-linearis_contig82.16038.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 867012..867677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.724992-UTR-C-linearis_contig82:866830..8670111622930607.724992-UTR-C-linearis_contig82:866830..867011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 866831..867011 +
1690881157.180094-UTR-C-linearis_contig82:866830..8670111690881157.180094-UTR-C-linearis_contig82:866830..867011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 866831..867011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.7570617-CDS-C-linearis_contig82:867011..8670631622930607.7570617-CDS-C-linearis_contig82:867011..867063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867012..867063 +
1690881157.1913428-CDS-C-linearis_contig82:867011..8670631690881157.1913428-CDS-C-linearis_contig82:867011..867063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867012..867063 +
1622930607.7771277-CDS-C-linearis_contig82:867233..8673401622930607.7771277-CDS-C-linearis_contig82:867233..867340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867234..867340 +
1690881157.200205-CDS-C-linearis_contig82:867233..8673401690881157.200205-CDS-C-linearis_contig82:867233..867340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867234..867340 +
1622930607.799926-CDS-C-linearis_contig82:867533..8676771622930607.799926-CDS-C-linearis_contig82:867533..867677Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867534..867677 +
1690881157.2130704-CDS-C-linearis_contig82:867533..8676771690881157.2130704-CDS-C-linearis_contig82:867533..867677Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 867534..867677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16038.1

>prot_C-linearis_contig82.16038.1 ID=prot_C-linearis_contig82.16038.1|Name=mRNA_C-linearis_contig82.16038.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
MCPAIDLPDSVHTAGITGGEQWLGTWQPTHARGTRQLLYDGVPVQVQDVC
GRRAHTQVCWTAPRRSETAPAVSSVPRPRPTTHCDRHSPGEPYWAEPFIA
R
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mRNA from alignment at C-linearis_contig82:866831..867677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16038.1 ID=mRNA_C-linearis_contig82.16038.1|Name=mRNA_C-linearis_contig82.16038.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=847bp|location=Sequence derived from alignment at C-linearis_contig82:866831..867677+ (Chordaria linearis ClinC8C monoicous)
ACAGCTTTTTACGCGGCAGGTACAACAGACCATCAACGATCAAGTGCAAC
ACTTTGGTCATGGGTCGAAGGCACGGAAACTGAAGGGGAAGCTCACAGCA
ACATTGCCGTAGTTCTGGCCGGATCAGATTTTCCGCGACGTGCCACACAA
GCTTCAGATTTTCCGCGACGTCCCCGAGTACATGTGTCCTGCAATCGACC
TCCCGGACTCTGTCCACACTGCGGGGATAACAGGTGCGAGTTACAACTAC
ATTTTTATTTCGTGGTAGGGCATAAACAAGGGGAGAAGTGCGCGAACGTA
CACGCCCGTAGCATTGTCTGGAATAGATTATGTTTGCATCGGCGACATCT
CTCTTTCAAATAGCGTTGTACCCTTGGTGCTCTGTCTGCTGGCTGCAACT
CAGGTGGTGAGCAATGGTTGGGAACCTGGCAGCCGACTCATGCACGCGGA
ACACGACAATTATTATATGATGGCGTTCCAGTACAAGTGCAAGACGTGTG
CGGGAGAAGGGTAAGCACGAAAGGGAGAGCATAATTGTTGCCAGTCGTTG
TCCCCATTTTCATGTCTGTACTAGGTGTTTGTACTGAAAGATGCGAGTCT
GCTGTGCGTTGTCAAGAGCACATGTGTGCCACTTTTTCCACTGCTGAACT
GTTTTCATGCATGCCCTGCTTGTGTACTCGAATGGGCTGTCATGGGCTAT
CAGGCGCACACACAGGTTTGCTGGACGGCACCCCGGCGTTCAGAAACGGC
TCCCGCGGTTTCTTCTGTGCCCCGCCCTCGTCCTACGACACATTGCGATC
GACACTCACCTGGTGAACCGTATTGGGCAGAGCCTTTTATCGCGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig82:866831..867677+

>mRNA_C-linearis_contig82.16038.1 ID=mRNA_C-linearis_contig82.16038.1|Name=mRNA_C-linearis_contig82.16038.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig82:866831..867677+ (Chordaria linearis ClinC8C monoicous)
ATGTGTCCTGCAATCGACCTCCCGGACTCTGTCCACACTGCGGGGATAAC
AGATGTGTCCTGCAATCGACCTCCCGGACTCTGTCCACACTGCGGGGATA
ACAGGTGGTGAGCAATGGTTGGGAACCTGGCAGCCGACTCATGCACGCGG
AACACGACAATTATTATATGATGGCGTTCCAGTACAAGTGCAAGACGTGT
GCGGGAGAAGGGTGGTGAGCAATGGTTGGGAACCTGGCAGCCGACTCATG
CACGCGGAACACGACAATTATTATATGATGGCGTTCCAGTACAAGTGCAA
GACGTGTGCGGGAGAAGGGCGCACACACAGGTTTGCTGGACGGCACCCCG
GCGTTCAGAAACGGCTCCCGCGGTTTCTTCTGTGCCCCGCCCTCGTCCTA
CGACACATTGCGATCGACACTCACCTGGTGAACCGTATTGGGCAGAGCCT
TTTATCGCGAGGGCGCACACACAGGTTTGCTGGACGGCACCCCGGCGTTC
AGAAACGGCTCCCGCGGTTTCTTCTGTGCCCCGCCCTCGTCCTACGACAC
ATTGCGATCGACACTCACCTGGTGAACCGTATTGGGCAGAGCCTTTTATC
GCGAGG
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