mRNA_C-linearis_contig82.16037.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16037.1
Unique NamemRNA_C-linearis_contig82.16037.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5KHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.740e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKGLMVEIFEGV 293
            + YAERRRRNGTL  L++ YDD CC+GA DVTKG +++IFEGV
Sbjct:  133 KRYAERRRRNGTLLALEWFYDDLCCRGADDVTKGWILDIFEGV 175
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5JZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ63_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.900e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKGLMVEIFEGV 293
            + YAERRRRNGTL  L++ YDD CC+GA DVTKG +++IFEGV
Sbjct:  357 KRYAERRRRNGTLLALEWFYDDLCCRGADDVTKGWILDIFEGV 399
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5KNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.690e-10
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:  171 YAERRRRNGTLSTLQYLYDDTCCKGAADVTKGLMVEIFEGVT 296
            YA+RRRRNGTL TLQYLYDD CCK A DVT+  M  IF G++
Sbjct:  145 YADRRRRNGTLPTLQYLYDDMCCKNAVDVTEPWMKSIFTGLS 186
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.300e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKGLMVEIFEGV 293
            + YAERRRR+GTL  L++LYD  CC+GA DVTKG +++IFEGV
Sbjct:  199 KRYAERRRRSGTLLALKWLYDYLCCRGADDVTKGWILDIFEGV 241
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: D8LRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.050e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKGLMVEIFEGV 293
            + YAERRRR+GTL+TLQ++ DD CC+GA DV +  ++ IF GV
Sbjct:  397 KRYAERRRRSGTLTTLQWIIDDLCCRGAKDVKQYFLMNIFPGV 439
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5K9V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.110e-8
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKG 266
            + YAERRRRNGTL  L+ LYDD CC+GA DVTKG
Sbjct:  174 KKYAERRRRNGTLLALECLYDDLCCRGADDVTKG 207
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5J582_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J582_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.500e-8
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKG 266
            + YA+RRRRN TL  L++LYDD CC+GA DVTKG
Sbjct:   47 KRYADRRRRNRTLLALEWLYDDLCCRGADDVTKG 80
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5KAB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.620e-7
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3 
Query:  171 YAERRRRNGTLSTLQYLYDDTCCKGAADVTKG 266
            YAERRRRNGTL  L+++YDD CC+GA DVTKG
Sbjct:  304 YAERRRRNGTLLALEWVYDDLCCRGADDVTKG 335
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BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5KXX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.010e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKG 266
            + YAERRRRNGTL  L++LYD  CC+GA DVTKG
Sbjct:  322 KRYAERRRRNGTLLALEWLYDYLCCRGADDVTKG 355
[Close]
BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Match: A0A6H5KD21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD21_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.750e-6
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  165 EMYAERRRRNGTLSTLQYLYDDTCCKGAADVTKGL 269
            + YAERRRRNGTL  L++LYDD CC+GA  V +G+
Sbjct:   80 KRYAERRRRNGTLLALEWLYDDLCCRGADHVHQGV 114
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KHD6_9PHAE1.740e-1167.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ63_9PHAE3.900e-1167.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ6_9PHAE1.690e-1069.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE1.300e-965.12Integrase catalytic domain-containing protein n=1 ... [more]
D8LRE6_ECTSI5.050e-858.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9V7_9PHAE8.110e-873.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J582_9PHAE8.500e-867.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAB7_9PHAE1.620e-775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX1_9PHAE8.010e-770.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD21_9PHAE2.750e-662.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:862352..863608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size298
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16037.1prot_C-linearis_contig82.16037.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 862352..863568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.6053107-CDS-C-linearis_contig82:862351..8625201622930607.6053107-CDS-C-linearis_contig82:862351..862520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 862352..862520 +
1690881157.139444-CDS-C-linearis_contig82:862351..8625201690881157.139444-CDS-C-linearis_contig82:862351..862520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 862352..862520 +
1622930607.6571555-CDS-C-linearis_contig82:863479..8635681622930607.6571555-CDS-C-linearis_contig82:863479..863568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 863480..863568 +
1690881157.152479-CDS-C-linearis_contig82:863479..8635681690881157.152479-CDS-C-linearis_contig82:863479..863568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 863480..863568 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.6744766-UTR-C-linearis_contig82:863568..8636081622930607.6744766-UTR-C-linearis_contig82:863568..863608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 863569..863608 +
1690881157.1691482-UTR-C-linearis_contig82:863568..8636081690881157.1691482-UTR-C-linearis_contig82:863568..863608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 863569..863608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16037.1

>prot_C-linearis_contig82.16037.1 ID=prot_C-linearis_contig82.16037.1|Name=mRNA_C-linearis_contig82.16037.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=86bp
PSTSRVTVGKAVLVLSPPRRGLPTAHPAYVSASQLRIITSGLIWTSSVSD
GGTLLKCTQRDAAGTARCPLCSICTTTLAVRGLLT*
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mRNA from alignment at C-linearis_contig82:862352..863608+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16037.1 ID=mRNA_C-linearis_contig82.16037.1|Name=mRNA_C-linearis_contig82.16037.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1257bp|location=Sequence derived from alignment at C-linearis_contig82:862352..863608+ (Chordaria linearis ClinC8C monoicous)
CCGAGCACGAGCAGAGTGACCGTGGGCAAAGCGGTTCTCGTGCTCTCCCC
TCCCCGGCGGGGGCTCCCTACTGCGCATCCTGCGTACGTATCAGCGAGCC
AACTGCGCATCATTACATCGGGGCTAATTTGGACCAGTTCAGTTTCTGAT
GGGGGCACACTCCTGAAATGTGAGATTTCTTGCCCCGAAAGCGAGTGTGG
CTTGATTTTCCAACCAAGACAAAACCGATTTCCGATTTCGGCATTCGGCA
TTTCGGCGGCGGCGGCCGGCGGCCGGTCGCAACAGTCCGAACTTCATGTC
TGCTGCACAAGGTCGGCCGGAAGGTCGCGGTAATCACGGAAGGGCCTGTT
ATGTATACTCGCGCATAGACAGATTATATTAAGCAGAGAAATTTCCACGG
CAAGTTGCAGGCAAATTGGGGTTTCGTGTTTGGATTGGATTGGATTGTGA
GGTACCACCTGTTTATCTCTACCTATATTGTTGTGCCTCCATGGGTTGGT
TCAGTTGCGGGTTTATGCGTATGTGACGCGTATACGGTGAGCTTGGCTTC
TGTGATGTGTGTGTGTTTGATGTGGAGGTAATAAGAGTATCCTTTTCCGG
CTATCACGCCAAGGCTATCACGCCTATGTCTATGTCTATCTATCGGCTAT
CACGCCAACCTGGCTATCACGCCAGCTATGGCTATCACGCCATCAATCTG
GGTTATCACACCCGGTAGAGCTATCACGCTCTATATATGTATCCCCGGGT
TATTACACTCGGCGGTGAATTAGTTTCTATATATTTCCCCGCTGACGGGA
ATTCGGCCACGTTGGTCACATACAACCAGGCATTCCGGTGCCCACAGCAC
AAAACTACACAATAGGGCCGACAGAGGAAGGCCAGAAATAAACGAAGCGC
CCGCACGGCAGATGTTCATCTGCCATATGTGTGGAAGACACAAGAACCAG
GGCGAGATTATTTCTGCATGGAGTGCAACCTGTCGGAAGAAAGGCTCGAG
CGGCGAATCACGTATGACTGCAATGCGAAAGCTGCCTTGCGTATCGTAGT
GCATCGTTTTTATGTCGTTGCGAATGACGCAGCGTCCCGTCGGCTCTTGC
TTTTTTGCTGTCCCAAATAACGCCGCAGGTACGCAGAGAGACGCCGCAGG
AACGGCACGCTGTCCACTCTGCAGTATTTGTACGACGACACTTGCTGTAA
GGGGGCTGCTGACGTAACGAAGGGGTTGATGGTCGAGATATTCGAGGGAG
TGACGCG
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Coding sequence (CDS) from alignment at C-linearis_contig82:862352..863608+

>mRNA_C-linearis_contig82.16037.1 ID=mRNA_C-linearis_contig82.16037.1|Name=mRNA_C-linearis_contig82.16037.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at C-linearis_contig82:862352..863608+ (Chordaria linearis ClinC8C monoicous)
CCGAGCACGAGCAGAGTGACCGTGGGCAAAGCGGTTCTCGTGCTCTCCCC
TCCCCGGCGGGGGCTCCCTACTGCGCATCCTGCGTACGTATCAGCGAGCC
AACTGCGCATCATTACATCGGGGCTAATTTGGACCAGTTCAGTTTCTGAT
GGGGGCACACTCCTGAAATCCGAGCACGAGCAGAGTGACCGTGGGCAAAG
CGGTTCTCGTGCTCTCCCCTCCCCGGCGGGGGCTCCCTACTGCGCATCCT
GCGTACGTATCAGCGAGCCAACTGCGCATCATTACATCGGGGCTAATTTG
GACCAGTTCAGTTTCTGATGGGGGCACACTCCTGAAATGTACGCAGAGAG
ACGCCGCAGGAACGGCACGCTGTCCACTCTGCAGTATTTGTACGACGACA
CTTGCTGTAAGGGGGCTGCTGACGTAAGTACGCAGAGAGACGCCGCAGGA
ACGGCACGCTGTCCACTCTGCAGTATTTGTACGACGACACTTGCTGTAAG
GGGGCTGCTGACGTAA
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