mRNA_C-linearis_contig82.15989.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15989.1
Unique NamemRNA_C-linearis_contig82.15989.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig82.15989.1 vs. uniprot
Match: Q8QKW0_ESV1K (EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K)

HSP 1 Score: 81.6 bits (200), Expect = 5.900e-18
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   10 STVRDIDNKFTSRLTRPEKMNG-RPVNPFAATSSQTPKSSFFEDLLKPEVTTTSELGVVYQGNVVDTKFEQAISFDRYTISASPKAGYKLHSTGRMDVEHTREK 318
            S V +I+  F  RL     +   RPVNPFA+T  QT ++   E  ++  VT    LG  Y+G V DTK + ++  D YTI+ +PK    +HST R+ VEHTRE+
Sbjct:    3 SAVHEINTAFNQRLKPVTGLGAARPVNPFASTGVQTSRTKRDEMTVRSSVTLPGTLGAQYKGKVFDTKNDDSVRLDTYTIAENPKRNITMHSTSRLKVEHTRER 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKW0_ESV1K5.900e-1841.35EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:320013..320333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-47
Ec32 orthologEc-06_006320.1
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.072957-CDS-C-linearis_contig82:320012..3203331622930611.072957-CDS-C-linearis_contig82:320012..320333Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 320013..320333 +
1690881158.8543012-CDS-C-linearis_contig82:320012..3203331690881158.8543012-CDS-C-linearis_contig82:320012..320333Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 320013..320333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15989.1prot_C-linearis_contig82.15989.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 320013..320333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15989.1

>prot_C-linearis_contig82.15989.1 ID=prot_C-linearis_contig82.15989.1|Name=mRNA_C-linearis_contig82.15989.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
MAWSTVRDIDNKFTSRLTRPEKMNGRPVNPFAATSSQTPKSSFFEDLLKP
EVTTTSELGVVYQGNVVDTKFEQAISFDRYTISASPKAGYKLHSTGRMDV
EHTREK*
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mRNA from alignment at C-linearis_contig82:320013..320333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15989.1 ID=mRNA_C-linearis_contig82.15989.1|Name=mRNA_C-linearis_contig82.15989.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at C-linearis_contig82:320013..320333+ (Chordaria linearis ClinC8C monoicous)
ATGGCTTGGTCAACCGTCCGAGACATTGACAACAAGTTCACGTCGAGGCT
GACCCGACCAGAGAAGATGAATGGACGACCAGTAAACCCATTTGCAGCCA
CCTCCTCGCAGACACCCAAAAGTTCTTTCTTCGAGGACCTTCTCAAGCCC
GAGGTCACCACCACGTCTGAGCTGGGTGTGGTGTACCAGGGCAATGTAGT
CGACACCAAGTTCGAGCAGGCGATTAGTTTCGACCGTTACACCATTTCGG
CCAGCCCTAAGGCCGGGTACAAGCTGCACTCCACCGGTAGGATGGACGTA
GAGCACACCAGGGAAAAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig82:320013..320333+

>mRNA_C-linearis_contig82.15989.1 ID=mRNA_C-linearis_contig82.15989.1|Name=mRNA_C-linearis_contig82.15989.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig82:320013..320333+ (Chordaria linearis ClinC8C monoicous)
ATGGCTTGGTCAACCGTCCGAGACATTGACAACAAGTTCACGTCGAGGCT
GACCCGACCAGAGAAGATGAATGGACGACCAGTAAACCCATTTGCAGCCA
CCTCCTCGCAGACACCCAAAAGTTCTTTCTTCGAGGACCTTCTCAAGCCC
GAGGTCACCACCACGTCTGAGCTGGGTGTGGTGTACCAGGGCAATGTAGT
CGACACCAAGTTCGAGCAGGCGATTAGTTTCGACCGTTACACCATTTCGG
CCAGCCCTAAGGCCGGGTACAAGCTGCACTCCACCGGTAGGATGGACGTA
GAGCACACCAGGGAAAAGTAGATGGCTTGGTCAACCGTCCGAGACATTGA
CAACAAGTTCACGTCGAGGCTGACCCGACCAGAGAAGATGAATGGACGAC
CAGTAAACCCATTTGCAGCCACCTCCTCGCAGACACCCAAAAGTTCTTTC
TTCGAGGACCTTCTCAAGCCCGAGGTCACCACCACGTCTGAGCTGGGTGT
GGTGTACCAGGGCAATGTAGTCGACACCAAGTTCGAGCAGGCGATTAGTT
TCGACCGTTACACCATTTCGGCCAGCCCTAAGGCCGGGTACAAGCTGCAC
TCCACCGGTAGGATGGACGTAGAGCACACCAGGGAAAAGTAG
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