mRNA_C-linearis_contig82.15984.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 416 bits (1070), Expect = 4.840e-145 Identity = 207/257 (80.54%), Postives = 226/257 (87.94%), Query Frame = 2
Query: 2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGIN 772
WMDMHQHLPYSMA LACSSF+EGKWAGSEKAFEHAVGQE+ARA LL LWP+LYE AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+A+SA EKKE+V D D EN PRVSGFDMIW+FPLLYEWACHAI FAPIHQQLVES FST+DTCT+KHDSREID+VRLGQFRS SR VQRL A+NKEIR AGDKAIAVAR K +A+HA+PNERQLRKR HDT QFLRD+S KSKHG N
Sbjct: 8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGSN 264
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 1.030e-135 Identity = 208/273 (76.19%), Postives = 235/273 (86.08%), Query Frame = 2
Query: 2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEES 820
WMDMHQHLPYSMA LACSSF+EGKWAGSEKA EHAVGQE+ARA LL LWP+L E AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+++SA EKKE+V D D E+ PRVSGFDMIW+FPLLYEWA HAI FAPIHQQLV+SV STYDTCT+KHDSREI +VRLGQFRS QSR VQRL A+NKEIR+AGDK IAVAR K +A+ A+PN+ QLRKR DT QFLRD+S KSKHG NW+V+SV++EEM SEES
Sbjct: 504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 368 bits (945), Expect = 1.600e-123 Identity = 194/274 (70.80%), Postives = 219/274 (79.93%), Query Frame = 2
Query: 32 SMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEESEAESNASDELS 853
SM LACSSFYEGKWAGSE+ FEHAVGQE ARALLL WP+ YE+ EW+GWEE++TF E +KLT GMFSKL AS EFR+E+ER+A SAHEKK+VVSDVDVEN TPRVSGFDMIW FP LYEWACHA+FFAPIHQQLVES STYDT T+KHDSRE+D+VRLGQF SR SR V+RLD+SN+EIRD GDKAIAVA K +ASHAVPNERQLR EHD +FL+DKS KSKHG W+VKSVMEE +LS E+ES AS+ LS
Sbjct: 164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEE-VLSSSEESESEASENLS 421
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 341 bits (875), Expect = 4.780e-115 Identity = 185/285 (64.91%), Postives = 220/285 (77.19%), Query Frame = 2
Query: 5 MDMHQHLP-YSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSD-VDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEESEAESNASDELS 853
MD H P ++ YEGKWAG++KA EHAVG+EFARALL+ LWP+ E+AEWR W+EEH L IL DLSEA T GEKDKLTFGM+++L+ S EFRKEVE +A SAHEKKEVVSD +DV+NP PRVS F MIW FPLLYEWA HAIF A IH+QLV SVFS YDTCT++HDSREID+VRLGQFRS QSR +++L ASN EIR+AG+KAIA ARA + AAS AVPNERQ RKR HD TQF+R + K+K+G W V+SV++ ESE+ES+ S ELS
Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD----MSESESESDVSAELS 281
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 160 bits (405), Expect = 3.640e-42 Identity = 96/238 (40.34%), Postives = 132/238 (55.46%), Query Frame = 2
Query: 2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKR 712
WM+ HQ LP SMA + C SF+ E A E AVG EFARA L V W LYE E E + L DL KD+LTFG+FS++D+ R E+E++A S D +V+ P+ S ++ FPLLY+ CH +F PIHQQL+E+ FS +D+C +K D E+D+VR+G ++S +SR + DA+ ++IR AG K + AR K + P E RKR
Sbjct: 233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGW------GDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.260e-37 Identity = 90/230 (39.13%), Postives = 120/230 (52.17%), Query Frame = 2
Query: 5 MDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPN 691
M HQ LP SMA + C SFY A E AVG EFARA V WP LYE E E + L DL KD+LT G+FS +D R E+E++A S D +++ P+ S ++ PLLY CH +F PIHQQL+E+ FS YD+C KK D E+D+VR+G ++S +SR + +DA + +IR AG K + A K + PN
Sbjct: 235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGW------GDKEIDESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.15984.1 >prot_C-linearis_contig82.15984.1 ID=prot_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp MDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDback to top mRNA from alignment at C-linearis_contig82:264879..265731- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.15984.1 ID=mRNA_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at C-linearis_contig82:264879..265731- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:264879..265731- >mRNA_C-linearis_contig82.15984.1 ID=mRNA_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig82:264879..265731- (Chordaria linearis ClinC8C monoicous)back to top |