mRNA_C-linearis_contig82.15984.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15984.1
Unique NamemRNA_C-linearis_contig82.15984.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 4.840e-145
Identity = 207/257 (80.54%), Postives = 226/257 (87.94%), Query Frame = 2
Query:    2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGIN 772
            WMDMHQHLPYSMA LACSSF+EGKWAGSEKAFEHAVGQE+ARA LL LWP+LYE AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+A+SA EKKE+V D D EN  PRVSGFDMIW+FPLLYEWACHAI FAPIHQQLVES FST+DTCT+KHDSREID+VRLGQFRS  SR VQRL A+NKEIR AGDKAIAVAR  K +A+HA+PNERQLRKR HDT QFLRD+S KSKHG N
Sbjct:    8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGSN 264          
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 1.030e-135
Identity = 208/273 (76.19%), Postives = 235/273 (86.08%), Query Frame = 2
Query:    2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEES 820
            WMDMHQHLPYSMA LACSSF+EGKWAGSEKA EHAVGQE+ARA LL LWP+L E AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+++SA EKKE+V D D E+  PRVSGFDMIW+FPLLYEWA HAI FAPIHQQLV+SV STYDTCT+KHDSREI +VRLGQFRS QSR VQRL A+NKEIR+AGDK IAVAR  K +A+ A+PN+ QLRKR  DT QFLRD+S KSKHG NW+V+SV++EEM SEES
Sbjct:  504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776          
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 1.600e-123
Identity = 194/274 (70.80%), Postives = 219/274 (79.93%), Query Frame = 2
Query:   32 SMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEESEAESNASDELS 853
            SM  LACSSFYEGKWAGSE+ FEHAVGQE ARALLL  WP+ YE+ EW+GWEE++TF E               +KLT GMFSKL AS EFR+E+ER+A SAHEKK+VVSDVDVEN TPRVSGFDMIW FP LYEWACHA+FFAPIHQQLVES  STYDT T+KHDSRE+D+VRLGQF SR SR V+RLD+SN+EIRD GDKAIAVA   K +ASHAVPNERQLR  EHD  +FL+DKS KSKHG  W+VKSVMEE +LS   E+ES AS+ LS
Sbjct:  164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEE-VLSSSEESESEASENLS 421          
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 4.780e-115
Identity = 185/285 (64.91%), Postives = 220/285 (77.19%), Query Frame = 2
Query:    5 MDMHQHLP-YSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSD-VDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEEMLSEESEAESNASDELS 853
            MD H   P      ++    YEGKWAG++KA EHAVG+EFARALL+ LWP+  E+AEWR W+EEH  L IL  DLSEA T GEKDKLTFGM+++L+ S EFRKEVE +A SAHEKKEVVSD +DV+NP PRVS F MIW FPLLYEWA HAIF A IH+QLV SVFS YDTCT++HDSREID+VRLGQFRS QSR +++L ASN EIR+AG+KAIA ARA + AAS AVPNERQ RKR HD TQF+R  + K+K+G  W V+SV++      ESE+ES+ S ELS
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD----MSESESESDVSAELS 281          
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.640e-42
Identity = 96/238 (40.34%), Postives = 132/238 (55.46%), Query Frame = 2
Query:    2 WMDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKR 712
            WM+ HQ LP SMA + C SF+       E A E AVG EFARA L V W  LYE       E E  +   L  DL        KD+LTFG+FS++D+    R E+E++A S         D +V+   P+  S    ++ FPLLY+  CH  +F PIHQQL+E+ FS +D+C +K D  E+D+VR+G ++S +SR +   DA+ ++IR AG K +  AR  K  +    P E   RKR
Sbjct:  233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGW------GDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462          
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.260e-37
Identity = 90/230 (39.13%), Postives = 120/230 (52.17%), Query Frame = 2
Query:    5 MDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPN 691
            M  HQ LP SMA + C SFY         A E AVG EFARA   V WP LYE       E E  +   L  DL        KD+LT G+FS +D     R E+E++A S         D +++   P+  S    ++  PLLY   CH  +F PIHQQL+E+ FS YD+C KK D  E+D+VR+G ++S +SR +  +DA + +IR AG K +  A   K  +    PN
Sbjct:  235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGW------GDKEIDESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JSZ3_9PHAE4.840e-14580.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE1.030e-13576.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE1.600e-12370.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ1_ECTSI4.780e-11564.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIQ1_ECTSI3.640e-4240.34Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE3.260e-3739.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:264879..265731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size853
Cds size849
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930610.725679-CDS-C-linearis_contig82:264878..2657271622930610.725679-CDS-C-linearis_contig82:264878..265727Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 264879..265727 -
1690881158.7282221-CDS-C-linearis_contig82:264878..2657271690881158.7282221-CDS-C-linearis_contig82:264878..265727Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 264879..265727 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930610.7379522-UTR-C-linearis_contig82:265727..2657311622930610.7379522-UTR-C-linearis_contig82:265727..265731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 265728..265731 -
1690881158.739426-UTR-C-linearis_contig82:265727..2657311690881158.739426-UTR-C-linearis_contig82:265727..265731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 265728..265731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15984.1prot_C-linearis_contig82.15984.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 264879..265727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15984.1

>prot_C-linearis_contig82.15984.1 ID=prot_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MDMHQHLPYSMAMLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPD
LYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEF
RKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAI
FFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRIVQRLDA
SNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMK
SKHGINWIVKSVMEEEMLSEESEAESNASDELS
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mRNA from alignment at C-linearis_contig82:264879..265731-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15984.1 ID=mRNA_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at C-linearis_contig82:264879..265731- (Chordaria linearis ClinC8C monoicous)
ATGGATGGACATGCACCAGCACCTCCCCTACAGCATGGCGATGCTGGCTT GCAGCTCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAA CATGCTGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCC TGATCTTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGT TTCTCGAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAG AAAGATAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGA GTTCAGGAAAGAGGTGGAGAGGTTTGCCGTATCTGCACACGAAAAGAAGG AGGTTGTAAGTGACGTCGATGTCGAAAACCCAACACCAAGGGTCTCGGGC TTTGACATGATTTGGGCCTTCCCTCTGCTCTACGAGTGGGCGTGTCACGC AATATTTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAA CGTACGATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTC CGCCTCGGGCAGTTCCGCTCACGCCAGTCTAGGATAGTACAGCGATTGGA CGCGAGCAACAAAGAAATTCGGGATGCGGGAGACAAGGCAATTGCTGTTG CGAGGGCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAA CTCCGAAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCAT GAAATCCAAGCATGGCATCAACTGGATCGTTAAGAGCGTGATGGAGGAGG AGATGTTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCATCCGATGAGCTG AGT
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Coding sequence (CDS) from alignment at C-linearis_contig82:264879..265731-

>mRNA_C-linearis_contig82.15984.1 ID=mRNA_C-linearis_contig82.15984.1|Name=mRNA_C-linearis_contig82.15984.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig82:264879..265731- (Chordaria linearis ClinC8C monoicous)
ATGGACATGCACCAGCACCTCCCCTACAGCATGGCGATGCTGGCTTGCAG
CTCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAACATG
CTGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGAT
CTTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGTTTCT
CGAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAGAAAG
ATAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGAGTTC
AGGAAAGAGGTGGAGAGGTTTGCCGTATCTGCACACGAAAAGAAGGAGGT
TGTAAGTGACGTCGATGTCGAAAACCCAACACCAAGGGTCTCGGGCTTTG
ACATGATTTGGGCCTTCCCTCTGCTCTACGAGTGGGCGTGTCACGCAATA
TTTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAACGTA
CGATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTCCGCC
TCGGGCAGTTCCGCTCACGCCAGTCTAGGATAGTACAGCGATTGGACGCG
AGCAACAAAGAAATTCGGGATGCGGGAGACAAGGCAATTGCTGTTGCGAG
GGCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAACTCC
GAAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCATGAAA
TCCAAGCATGGCATCAACTGGATCGTTAAGAGCGTGATGGAGGAGGAGAT
GTTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCATCCGATGAGCTGAGTA
TGGACATGCACCAGCACCTCCCCTACAGCATGGCGATGCTGGCTTGCAGC
TCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAACATGC
TGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGATC
TTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGTTTCTC
GAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAGAAAGA
TAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGAGTTCA
GGAAAGAGGTGGAGAGGTTTGCCGTATCTGCACACGAAAAGAAGGAGGTT
GTAAGTGACGTCGATGTCGAAAACCCAACACCAAGGGTCTCGGGCTTTGA
CATGATTTGGGCCTTCCCTCTGCTCTACGAGTGGGCGTGTCACGCAATAT
TTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAACGTAC
GATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTCCGCCT
CGGGCAGTTCCGCTCACGCCAGTCTAGGATAGTACAGCGATTGGACGCGA
GCAACAAAGAAATTCGGGATGCGGGAGACAAGGCAATTGCTGTTGCGAGG
GCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAACTCCG
AAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCATGAAAT
CCAAGCATGGCATCAACTGGATCGTTAAGAGCGTGATGGAGGAGGAGATG
TTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCATCCGATGAGCTGAGT
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