mRNA_C-linearis_contig82.15982.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15982.1
Unique NamemRNA_C-linearis_contig82.15982.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:178229..179096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size869
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.977786-CDS-C-linearis_contig82:178228..1790951622930607.977786-CDS-C-linearis_contig82:178228..179095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 178229..179095 +
1690881157.2790875-CDS-C-linearis_contig82:178228..1790951690881157.2790875-CDS-C-linearis_contig82:178228..179095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 178229..179095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15982.1prot_C-linearis_contig82.15982.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 178229..179095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15982.1

>prot_C-linearis_contig82.15982.1 ID=prot_C-linearis_contig82.15982.1|Name=mRNA_C-linearis_contig82.15982.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
QAVCLRQELVLAEPALHPASSSACPSTTDAESTADNLAAAHARAGEAAPS
RRPASAKGDNVFRQFIHGARRKGRKGDNDDDDDMSTGEGCGIRRGCGGLP
AGGGSNSRGGAIVDEEKQRRRDGAGTVAVPPAVVSATQPSECNSRGGAIV
DEEKQRRRDGAGTVAVPPAVVSATQPSECNASVEGSRRRRTSVGTGGTGA
AGGGDTATCPSAGSSGQQGRGGDELDTCGGQEEGLHGGKRGRGGWRIGEG
IPVPLGGTDAVWHRLKHLLEREEAAAAAGRRGGDVAADR
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mRNA from alignment at C-linearis_contig82:178229..179096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15982.1 ID=mRNA_C-linearis_contig82.15982.1|Name=mRNA_C-linearis_contig82.15982.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=868bp|location=Sequence derived from alignment at C-linearis_contig82:178229..179096+ (Chordaria linearis ClinC8C monoicous)
CAGGCCGTCTGCCTGAGGCAAGAGCTCGTCCTAGCCGAACCGGCTCTCCA
CCCCGCTTCATCTTCCGCCTGTCCCTCAACAACGGACGCCGAGAGCACCG
CCGACAACCTCGCAGCAGCTCATGCACGCGCGGGGGAAGCAGCCCCGAGT
CGCCGCCCCGCCTCTGCCAAGGGCGACAATGTTTTCCGGCAGTTCATCCA
TGGGGCGCGGAGAAAGGGTCGCAAAGGCGACAACGATGACGACGACGACA
TGAGTACCGGTGAAGGATGTGGGATCCGAAGAGGATGTGGGGGCCTGCCG
GCCGGCGGCGGCAGCAACAGCCGCGGTGGCGCAATAGTAGACGAAGAGAA
ACAGCGGCGACGAGATGGGGCCGGGACCGTCGCAGTGCCGCCGGCAGTGG
TCTCCGCTACCCAGCCATCGGAGTGCAACAGCCGCGGTGGCGCAATAGTA
GACGAAGAGAAACAGCGGCGACGAGATGGGGCCGGGACCGTCGCAGTGCC
GCCGGCAGTGGTCTCCGCTACCCAGCCATCGGAGTGCAACGCGTCCGTCG
AGGGCAGCCGTCGACGAAGAACGAGCGTTGGTACCGGCGGGACGGGGGCG
GCAGGCGGGGGTGACACAGCAACGTGTCCGTCCGCCGGTAGTAGTGGACA
GCAAGGACGGGGTGGAGACGAGTTGGACACGTGTGGTGGGCAAGAGGAAG
GGTTACATGGTGGCAAGAGAGGAAGAGGTGGGTGGAGAATAGGGGAAGGT
ATTCCAGTGCCCTTGGGGGGAACCGATGCTGTGTGGCATCGGCTGAAGCA
CCTGCTCGAGAGGGAGGAAGCAGCAGCAGCAGCCGGTAGGAGAGGAGGTG
ACGTTGCAGCGGATAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig82:178229..179096+

>mRNA_C-linearis_contig82.15982.1 ID=mRNA_C-linearis_contig82.15982.1|Name=mRNA_C-linearis_contig82.15982.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig82:178229..179096+ (Chordaria linearis ClinC8C monoicous)
CAGGCCGTCTGCCTGAGGCAAGAGCTCGTCCTAGCCGAACCGGCTCTCCA
CCCCGCTTCATCTTCCGCCTGTCCCTCAACAACGGACGCCGAGAGCACCG
CCGACAACCTCGCAGCAGCTCATGCACGCGCGGGGGAAGCAGCCCCGAGT
CGCCGCCCCGCCTCTGCCAAGGGCGACAATGTTTTCCGGCAGTTCATCCA
TGGGGCGCGGAGAAAGGGTCGCAAAGGCGACAACGATGACGACGACGACA
TGAGTACCGGTGAAGGATGTGGGATCCGAAGAGGATGTGGGGGCCTGCCG
GCCGGCGGCGGCAGCAACAGCCGCGGTGGCGCAATAGTAGACGAAGAGAA
ACAGCGGCGACGAGATGGGGCCGGGACCGTCGCAGTGCCGCCGGCAGTGG
TCTCCGCTACCCAGCCATCGGAGTGCAACAGCCGCGGTGGCGCAATAGTA
GACGAAGAGAAACAGCGGCGACGAGATGGGGCCGGGACCGTCGCAGTGCC
GCCGGCAGTGGTCTCCGCTACCCAGCCATCGGAGTGCAACGCGTCCGTCG
AGGGCAGCCGTCGACGAAGAACGAGCGTTGGTACCGGCGGGACGGGGGCG
GCAGGCGGGGGTGACACAGCAACGTGTCCGTCCGCCGGTAGTAGTGGACA
GCAAGGACGGGGTGGAGACGAGTTGGACACGTGTGGTGGGCAAGAGGAAG
GGTTACATGGTGGCAAGAGAGGAAGAGGTGGGTGGAGAATAGGGGAAGGT
ATTCCAGTGCCCTTGGGGGGAACCGATGCTGTGTGGCATCGGCTGAAGCA
CCTGCTCGAGAGGGAGGAAGCAGCAGCAGCAGCCGGTAGGAGAGGAGGTG
ACGTTGCAGCGGATAGGCAGGCCGTCTGCCTGAGGCAAGAGCTCGTCCTA
GCCGAACCGGCTCTCCACCCCGCTTCATCTTCCGCCTGTCCCTCAACAAC
GGACGCCGAGAGCACCGCCGACAACCTCGCAGCAGCTCATGCACGCGCGG
GGGAAGCAGCCCCGAGTCGCCGCCCCGCCTCTGCCAAGGGCGACAATGTT
TTCCGGCAGTTCATCCATGGGGCGCGGAGAAAGGGTCGCAAAGGCGACAA
CGATGACGACGACGACATGAGTACCGGTGAAGGATGTGGGATCCGAAGAG
GATGTGGGGGCCTGCCGGCCGGCGGCGGCAGCAACAGCCGCGGTGGCGCA
ATAGTAGACGAAGAGAAACAGCGGCGACGAGATGGGGCCGGGACCGTCGC
AGTGCCGCCGGCAGTGGTCTCCGCTACCCAGCCATCGGAGTGCAACAGCC
GCGGTGGCGCAATAGTAGACGAAGAGAAACAGCGGCGACGAGATGGGGCC
GGGACCGTCGCAGTGCCGCCGGCAGTGGTCTCCGCTACCCAGCCATCGGA
GTGCAACGCGTCCGTCGAGGGCAGCCGTCGACGAAGAACGAGCGTTGGTA
CCGGCGGGACGGGGGCGGCAGGCGGGGGTGACACAGCAACGTGTCCGTCC
GCCGGTAGTAGTGGACAGCAAGGACGGGGTGGAGACGAGTTGGACACGTG
TGGTGGGCAAGAGGAAGGGTTACATGGTGGCAAGAGAGGAAGAGGTGGGT
GGAGAATAGGGGAAGGTATTCCAGTGCCCTTGGGGGGAACCGATGCTGTG
TGGCATCGGCTGAAGCACCTGCTCGAGAGGGAGGAAGCAGCAGCAGCAGC
CGGTAGGAGAGGAGGTGACGTTGCAGCGGATAGG
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