mRNA_C-linearis_contig82.15980.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15980.1
Unique NamemRNA_C-linearis_contig82.15980.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:155977..156385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.9217827-UTR-C-linearis_contig82:155976..1560461622930607.9217827-UTR-C-linearis_contig82:155976..156046Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 155977..156046 +
1690881157.2505932-UTR-C-linearis_contig82:155976..1560461690881157.2505932-UTR-C-linearis_contig82:155976..156046Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 155977..156046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.9405513-CDS-C-linearis_contig82:156046..1563851622930607.9405513-CDS-C-linearis_contig82:156046..156385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 156047..156385 +
1690881157.2692592-CDS-C-linearis_contig82:156046..1563851690881157.2692592-CDS-C-linearis_contig82:156046..156385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 156047..156385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15980.1prot_C-linearis_contig82.15980.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 156047..156385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15980.1

>prot_C-linearis_contig82.15980.1 ID=prot_C-linearis_contig82.15980.1|Name=mRNA_C-linearis_contig82.15980.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MSTSFCTNVNMLLSLVERLMFDPRTGECAANGLKCLCAANGRMALKPSRV
RPADDKFDRMERECAGWAVAPAVQRLPTTAVEALGGETGAGGVTTAPGSC
GIQVRDRISSSSS
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mRNA from alignment at C-linearis_contig82:155977..156385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15980.1 ID=mRNA_C-linearis_contig82.15980.1|Name=mRNA_C-linearis_contig82.15980.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=409bp|location=Sequence derived from alignment at C-linearis_contig82:155977..156385+ (Chordaria linearis ClinC8C monoicous)
CTGGTGGCACGGGCAACGTCTGGGCTGTGAAGGTTTGTGGGCATTTGACT
GGAACGGCCGCCGGCTCTAGATGTCAACCTCCTTCTGCACAAATGTCAAC
ATGCTTTTATCTCTGGTTGAGCGACTCATGTTCGACCCCAGAACGGGCGA
GTGCGCAGCAAACGGGCTCAAATGTCTGTGCGCAGCAAACGGGCGGATGG
CGCTCAAGCCCAGCCGTGTACGCCCTGCCGACGACAAGTTTGACCGTATG
GAGAGAGAATGTGCTGGGTGGGCAGTTGCACCTGCAGTGCAGCGCCTGCC
AACCACCGCGGTCGAGGCACTTGGCGGCGAAACCGGAGCTGGCGGAGTAA
CTACAGCACCCGGATCTTGTGGCATCCAGGTCAGAGATCGAATCAGCAGC
AGCAGTAGC
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Coding sequence (CDS) from alignment at C-linearis_contig82:155977..156385+

>mRNA_C-linearis_contig82.15980.1 ID=mRNA_C-linearis_contig82.15980.1|Name=mRNA_C-linearis_contig82.15980.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig82:155977..156385+ (Chordaria linearis ClinC8C monoicous)
ATGTCAACCTCCTTCTGCACAAATGTCAACATGCTTTTATCTCTGGTTGA
GCGACTCATGTTCGACCCCAGAACGGGCGAGTGCGCAGCAAACGGGCTCA
AATGTCTGTGCGCAGCAAACGGGCGGATGGCGCTCAAGCCCAGCCGTGTA
CGCCCTGCCGACGACAAGTTTGACCGTATGGAGAGAGAATGTGCTGGGTG
GGCAGTTGCACCTGCAGTGCAGCGCCTGCCAACCACCGCGGTCGAGGCAC
TTGGCGGCGAAACCGGAGCTGGCGGAGTAACTACAGCACCCGGATCTTGT
GGCATCCAGGTCAGAGATCGAATCAGCAGCAGCAGTAGCATGTCAACCTC
CTTCTGCACAAATGTCAACATGCTTTTATCTCTGGTTGAGCGACTCATGT
TCGACCCCAGAACGGGCGAGTGCGCAGCAAACGGGCTCAAATGTCTGTGC
GCAGCAAACGGGCGGATGGCGCTCAAGCCCAGCCGTGTACGCCCTGCCGA
CGACAAGTTTGACCGTATGGAGAGAGAATGTGCTGGGTGGGCAGTTGCAC
CTGCAGTGCAGCGCCTGCCAACCACCGCGGTCGAGGCACTTGGCGGCGAA
ACCGGAGCTGGCGGAGTAACTACAGCACCCGGATCTTGTGGCATCCAGGT
CAGAGATCGAATCAGCAGCAGCAGTAGC
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