mRNA_C-linearis_contig81.15968.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15968.1
Unique NamemRNA_C-linearis_contig81.15968.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig81.15968.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 8.070e-13
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:    2 KRPRMSPFEAAAAAHAEDAGDCRVGDSADERREQLEAIADMEVSAFKAAAGIRVWDMKKT 181
            KRPRMS FEAAAA             SADE+REQL AI DMEVSAFKAA GIRVWDM+KT
Sbjct:  413 KRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKT 472
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCS5_ECTSI8.070e-1368.33Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:689970..690180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size211
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.081616-UTR-C-linearis_contig81:689969..6899821622930606.081616-UTR-C-linearis_contig81:689969..689982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 689970..689982 +
1690881156.420921-UTR-C-linearis_contig81:689969..6899821690881156.420921-UTR-C-linearis_contig81:689969..689982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 689970..689982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.0942397-CDS-C-linearis_contig81:689982..6901801622930606.0942397-CDS-C-linearis_contig81:689982..690180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 689983..690180 +
1690881156.4338946-CDS-C-linearis_contig81:689982..6901801690881156.4338946-CDS-C-linearis_contig81:689982..690180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 689983..690180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15968.1prot_C-linearis_contig81.15968.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 689983..690180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15968.1

>prot_C-linearis_contig81.15968.1 ID=prot_C-linearis_contig81.15968.1|Name=mRNA_C-linearis_contig81.15968.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
MSPFEAAAAAHAEDAGDCRVGDSADERREQLEAIADMEVSAFKAAAGIRV
WDMKKTKKAGETVEKK
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mRNA from alignment at C-linearis_contig81:689970..690180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15968.1 ID=mRNA_C-linearis_contig81.15968.1|Name=mRNA_C-linearis_contig81.15968.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=211bp|location=Sequence derived from alignment at C-linearis_contig81:689970..690180+ (Chordaria linearis ClinC8C monoicous)
GAAGCGCCCTCGCATGAGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCTG
AGGATGCAGGTGATTGCAGAGTTGGCGATTCTGCGGATGAGAGACGCGAG
CAACTGGAAGCCATCGCGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGC
AGGGATACGGGTTTGGGACATGAAGAAAACCAAGAAGGCAGGGGAGACGG
TAGAGAAGAAG
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Coding sequence (CDS) from alignment at C-linearis_contig81:689970..690180+

>mRNA_C-linearis_contig81.15968.1 ID=mRNA_C-linearis_contig81.15968.1|Name=mRNA_C-linearis_contig81.15968.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig81:689970..690180+ (Chordaria linearis ClinC8C monoicous)
ATGAGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCTGAGGATGCAGGTGA
TTGCAGAGTTGGCGATTCTGCGGATGAGAGACGCGAGCAACTGGAAGCCA
TCGCGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGCAGGGATACGGGTT
TGGGACATGAAGAAAACCAAGAAGGCAGGGGAGACGGTAGAGAAGAAGAT
GAGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCTGAGGATGCAGGTGATT
GCAGAGTTGGCGATTCTGCGGATGAGAGACGCGAGCAACTGGAAGCCATC
GCGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGCAGGGATACGGGTTTG
GGACATGAAGAAAACCAAGAAGGCAGGGGAGACGGTAGAGAAGAAG
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