mRNA_C-linearis_contig81.15960.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15960.1
Unique NamemRNA_C-linearis_contig81.15960.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig81.15960.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.320e-30
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    1 MNGAGGSSSRADVKKLKHELNSDKKKAKTAKADGEIRRRAFDAMAAPHVESKTSVALGASVQGLTEAVVSKELLDQEEAKRRRWKANVEAKEKKLAMWERRGKEESPAALALEQELEDLYDNPVAAPLAVVTP 399
            MNGAGG  SRA++K L HE+N++ KK K A+AD  ++RRA +A++ P  +SK+S+ L  SV+ LT AVVSKELLDQE+A+R RW   V A E KLA+W + GK  +  A AL++EL   YDNPV APL+V  P
Sbjct:  361 MNGAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRAMESKLALWGKMGKGSTAEAQALQEELLHAYDNPVVAPLSVAAP 493
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BLAST of mRNA_C-linearis_contig81.15960.1 vs. uniprot
Match: A0A6H5KSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.680e-29
Identity = 71/132 (53.79%), Postives = 94/132 (71.21%), Query Frame = 1 
Query:    4 NGAGGSSSRADVKKLKHELNSDKKKAKTAKADGEIRRRAFDAMAAPHVESKTSVALGASVQGLTEAVVSKELLDQEEAKRRRWKANVEAKEKKLAMWERRGKEESPAALALEQELEDLYDNPVAAPLAVVTP 399
            NGAGG  SRA++K L H +N++ KK K+A+ D  + RRAF+A++AP  +SK++  L  SV+ LT AVVSKELLDQ+ A+R RWK NV A EKKL ++E+RGK  +P A  LE+ L  +YD PV APL V  P
Sbjct:  220 NGAGGKHSRAEMKALAHGVNAENKKLKSAETDAALERRAFEALSAPPEDSKSTKELVESVKALTRAVVSKELLDQDAAERARWKENVGAMEKKLELYEKRGKGNTPEAQDLEKALLAMYDAPVVAPLPVAAP 351
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BLAST of mRNA_C-linearis_contig81.15960.1 vs. uniprot
Match: A0A6H5K3L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.100e-5
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  196 EAVVSKELLDQEEAKRRRWKANVEAKEKKLAMWERRGKEESPAALALEQELEDLYDNPVAAPLAVVTP 399
            EAVV+K  L++EEA  +R    ++ KE+KL +WE+RGKE +   LALE ELE LYDNP   P A V P
Sbjct:  365 EAVVAKGRLNEEEAAGQRHMQTIDGKERKLKLWEKRGKE-AEDYLALEAELEYLYDNP---PCAAVEP 428
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.320e-3054.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ3_9PHAE3.680e-2953.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3L7_9PHAE2.100e-552.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:544696..545229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.3524692-CDS-C-linearis_contig81:544695..5452291622930600.3524692-CDS-C-linearis_contig81:544695..545229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 544696..545229 +
1690881153.5318782-CDS-C-linearis_contig81:544695..5452291690881153.5318782-CDS-C-linearis_contig81:544695..545229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 544696..545229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15960.1prot_C-linearis_contig81.15960.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 544696..545229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15960.1

>prot_C-linearis_contig81.15960.1 ID=prot_C-linearis_contig81.15960.1|Name=mRNA_C-linearis_contig81.15960.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp
MNGAGGSSSRADVKKLKHELNSDKKKAKTAKADGEIRRRAFDAMAAPHVE
SKTSVALGASVQGLTEAVVSKELLDQEEAKRRRWKANVEAKEKKLAMWER
RGKEESPAALALEQELEDLYDNPVAAPLAVVTPPPPGTPSSATPNLARGG
GEGIAAGGGGGGARCGWSSKRGHCRSGR
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mRNA from alignment at C-linearis_contig81:544696..545229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15960.1 ID=mRNA_C-linearis_contig81.15960.1|Name=mRNA_C-linearis_contig81.15960.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at C-linearis_contig81:544696..545229+ (Chordaria linearis ClinC8C monoicous)
ATGAACGGGGCCGGCGGCTCGTCAAGCCGAGCGGACGTAAAGAAGCTGAA
GCACGAGTTGAACTCCGACAAGAAGAAGGCAAAGACTGCAAAAGCCGACG
GTGAAATAAGGCGCCGTGCCTTCGACGCGATGGCCGCCCCGCATGTTGAG
TCCAAAACTTCGGTGGCGTTGGGCGCCAGCGTGCAAGGGCTGACCGAGGC
CGTCGTGAGCAAGGAGCTGCTCGACCAAGAGGAAGCAAAGCGTAGGCGTT
GGAAGGCGAACGTCGAGGCGAAGGAGAAAAAACTAGCCATGTGGGAGAGG
AGGGGAAAGGAAGAATCTCCGGCGGCACTGGCACTGGAGCAAGAGCTCGA
AGACCTGTACGACAACCCCGTCGCCGCCCCCCTGGCTGTGGTAACCCCCC
CACCCCCAGGCACTCCCAGTTCTGCAACTCCAAACTTAGCACGAGGTGGT
GGAGAAGGGATAGCTGCTGGAGGGGGCGGGGGGGGCGCACGATGCGGTTG
GAGTTCTAAGCGAGGACACTGCAGGAGTGGGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig81:544696..545229+

>mRNA_C-linearis_contig81.15960.1 ID=mRNA_C-linearis_contig81.15960.1|Name=mRNA_C-linearis_contig81.15960.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig81:544696..545229+ (Chordaria linearis ClinC8C monoicous)
ATGAACGGGGCCGGCGGCTCGTCAAGCCGAGCGGACGTAAAGAAGCTGAA
GCACGAGTTGAACTCCGACAAGAAGAAGGCAAAGACTGCAAAAGCCGACG
GTGAAATAAGGCGCCGTGCCTTCGACGCGATGGCCGCCCCGCATGTTGAG
TCCAAAACTTCGGTGGCGTTGGGCGCCAGCGTGCAAGGGCTGACCGAGGC
CGTCGTGAGCAAGGAGCTGCTCGACCAAGAGGAAGCAAAGCGTAGGCGTT
GGAAGGCGAACGTCGAGGCGAAGGAGAAAAAACTAGCCATGTGGGAGAGG
AGGGGAAAGGAAGAATCTCCGGCGGCACTGGCACTGGAGCAAGAGCTCGA
AGACCTGTACGACAACCCCGTCGCCGCCCCCCTGGCTGTGGTAACCCCCC
CACCCCCAGGCACTCCCAGTTCTGCAACTCCAAACTTAGCACGAGGTGGT
GGAGAAGGGATAGCTGCTGGAGGGGGCGGGGGGGGCGCACGATGCGGTTG
GAGTTCTAAGCGAGGACACTGCAGGAGTGGGCGGATGAACGGGGCCGGCG
GCTCGTCAAGCCGAGCGGACGTAAAGAAGCTGAAGCACGAGTTGAACTCC
GACAAGAAGAAGGCAAAGACTGCAAAAGCCGACGGTGAAATAAGGCGCCG
TGCCTTCGACGCGATGGCCGCCCCGCATGTTGAGTCCAAAACTTCGGTGG
CGTTGGGCGCCAGCGTGCAAGGGCTGACCGAGGCCGTCGTGAGCAAGGAG
CTGCTCGACCAAGAGGAAGCAAAGCGTAGGCGTTGGAAGGCGAACGTCGA
GGCGAAGGAGAAAAAACTAGCCATGTGGGAGAGGAGGGGAAAGGAAGAAT
CTCCGGCGGCACTGGCACTGGAGCAAGAGCTCGAAGACCTGTACGACAAC
CCCGTCGCCGCCCCCCTGGCTGTGGTAACCCCCCCACCCCCAGGCACTCC
CAGTTCTGCAACTCCAAACTTAGCACGAGGTGGTGGAGAAGGGATAGCTG
CTGGAGGGGGCGGGGGGGGCGCACGATGCGGTTGGAGTTCTAAGCGAGGA
CACTGCAGGAGTGGGCGG
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