mRNA_C-linearis_contig81.15954.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15954.1
Unique NamemRNA_C-linearis_contig81.15954.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: D8LMA2_ECTSI (COX4 neighbour n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA2_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 1.290e-92
Identity = 144/192 (75.00%), Postives = 165/192 (85.94%), Query Frame = 2 
Query:   35 MSSGGVSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTSTLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGIASA 610
            MSS  V+VE  AY+K+MLHAAKYPWAAVNGFLLGE G   GQ+ VKDAVPLFHTSTLAPLLETSA M+DAHAA  GL IVGFYQANQCLDDNAPG L++++M+KID    G SVL+V+SNKRLE AGDSAVSAYGRD+NNSFRKH+EV V+ E ++AFESALA + E ++VD+DEHLDDV KDWRNPGIASA
Sbjct:    1 MSSFNVNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGL-TGQVSVKDAVPLFHTSTLAPLLETSAVMVDAHAARSGLCIVGFYQANQCLDDNAPGALATEVMNKIDSTHAGPSVLVVISNKRLETAGDSAVSAYGRDSNNSFRKHVEVEVAAEAVKAFESALADKTEGRLVDMDEHLDDVQKDWRNPGIASA 191
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A835YUA8_9STRA (COX4 neighbour n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.600e-30
Identity = 72/189 (38.10%), Postives = 109/189 (57.67%), Query Frame = 2 
Query:   47 GVSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTSTLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDN-APGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGIASA 610
            G  VE  AY K+MLH+A++P   V G LLG       +  VKDAVPLFH   L P+LE ++S++DA+     L +VG Y A    +D   P T   ++  K+       +VLL  ++K+L+ A + A+ A+ RD+  ++R+ LE++V   ++ AF   L       V D+D+HLDDV+KDWRN  + +A
Sbjct:    3 GAEVEPKAYCKLMLHSAQHPSCDVLGVLLGSQDD--SRTVVKDAVPLFHLPVLTPMLEVASSLVDAYVRESDLKMVGTYYATATPEDMPGPPTHLPRVATKLCEKLGDRAVLLQQNHKKLDAAQEHALLAFERDSGGNYRRALELSVDSASVTAFNGLLLANSVPFVRDMDDHLDDVTKDWRNKTLEAA 189
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: UPI000A2A7D06 (ER membrane protein complex subunit 8 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7D06)

HSP 1 Score: 124 bits (312), Expect = 9.160e-30
Identity = 73/187 (39.04%), Postives = 108/187 (57.75%), Query Frame = 2 
Query:   56 VEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTST-LAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKI-DVARDGSSVLLVVSNKRLEIAGDS-AVSAYGRDANN--SFRKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            +   AY KM+LHAAKYP  AVNG LLGE      ++  +DA+PLFH    LAP+LE + + +D++  + GL IVG++QAN+ +D+N+P  ++ KI +KI D   +G   LL++ N +L ++ D  A+  Y    N      K L VA   +T+      +  +    +VD D HLDD+S DW N  I
Sbjct:    5 ISAKAYTKMLLHAAKYPHKAVNGVLLGEESIQDSEVYAQDAIPLFHQCLGLAPMLEVALNQVDSYCKASGLQIVGYFQANEHIDNNSPDGIAYKIGEKITDHCANG--CLLMIDNTKLSVSCDDVAIKCYIVQDNKWKLIDKDLSVAGGDDTLNLTSDLIEGKAYQSLVDFDNHLDDMSLDWLNHDI 189
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A7RMN9_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RMN9_NEMVE)

HSP 1 Score: 120 bits (300), Expect = 4.860e-28
Identity = 72/188 (38.30%), Postives = 114/188 (60.64%), Query Frame = 2 
Query:   56 VEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTST-LAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKI-DVARDGSSVLLVVSNKRLEIAGDS-AVSAYG-RDANNSFRKHLEVAVSG--ETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            +   AY KM+LHA+KYP  AVNG LLGE  +  G++ V DAVPLFH    LAPLLE + + +D++  ++G  I+G+YQAN+ +++N+P  ++ KI +KI D   +G   +L++ N ++ I+ D  A   Y  +D+   F +  +V V G  +T+      L  +    ++D D HLDD+++DW N  I
Sbjct:    5 ISARAYAKMLLHASKYPHKAVNGVLLGEEVTHDGELYVLDAVPLFHHCLGLAPLLEVALTQVDSYCKTLGHHIIGYYQANEHIENNSPDNIAYKIGEKIADQCSNG--FILMIDNSKMSISCDEVACKCYTVQDSKWKFCEK-DVCVDGGDDTLSLTSELLEGKAYQSLIDFDNHLDDITQDWLNRDI 189
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A6P8Z1H3_THRPL (ER membrane protein complex subunit 8/9 homolog n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Z1H3_THRPL)

HSP 1 Score: 119 bits (299), Expect = 6.380e-28
Identity = 70/182 (38.46%), Postives = 104/182 (57.14%), Query Frame = 2 
Query:   50 VSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTST-LAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRN 592
            V++   AY KM+LHAAKYP  A+NG LLG       ++ V DAVPLFH    ++P+ E + + +D  AA+  LSI G+Y AN+ + D +    ++KI DKI      S+  +VV NK L ++ ++A  A  +  +  +R   +  V  E +    + L QR    +VD D HLDDVS+DW+N
Sbjct:    4 VTLSARAYCKMILHAAKYPHCAINGLLLGRLSKDKDELLVTDAVPLFHVCLQVSPMAEIALTQVDHAAANENLSIAGYYVANESISDLSIDKAANKIADKI-AENFSSACFIVVDNKHLTLSMETAGIAVSQYNDGKWRGK-DFKVDNEVLDTAAALLEQRAFKTLVDFDNHLDDVSQDWKN 183
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A3M6UC68_POCDA (MPN domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UC68_POCDA)

HSP 1 Score: 118 bits (295), Expect = 2.410e-27
Identity = 71/182 (39.01%), Postives = 104/182 (57.14%), Query Frame = 2 
Query:   68 AYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFH-TSTLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKI-DVARDGSSVLLVVSNKRLEI-AGDSAVSAYGRDANNSFRKHLEVAVSGE-TIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            AY K++LH AKYP  AVNG LLG      G+I   DA+PLFH T  LAP+LE + + +D H     L IVG+YQAN+ ++DN+P  +  KI +KI D   +G   +L+V N +L +   + A   Y    N   +   ++ + GE ++Q     L  +V   ++D D HLDD+++DW N  I
Sbjct:    9 AYAKILLHTAKYPHKAVNGVLLGVENPKDGEIYALDAIPLFHITLGLAPMLEVALARVDIHCKKNELQIVGYYQANEHINDNSPNAICYKIGEKICDQFNNG--FMLMVDNTKLTVPCKEIACKCYVVQDNKWKQSDKDLLLEGEDSLQLTTELLEGKVYQSLIDFDNHLDDITQDWLNKDI 188
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: UPI0014031EA0 (ER membrane protein complex subunit 9 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014031EA0)

HSP 1 Score: 118 bits (296), Expect = 2.450e-27
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 2 
Query:   50 VSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSP-AGQICV--KDAVPLFHTS-TLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSGE---TIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            V +   AYVKM LHAAK PW AVNG LL +   P   Q C+   DA+PLFHTS  L P+LE + + +D  +A+    I G+YQAN  L D++P  +++KI D++     G+ ++++ + K     G  AV  Y R  N    K   + +  +   T QA    +A R    +VD D+HLDD+ +DW N  I
Sbjct:    4 VEISPRAYVKMQLHAAKLPWRAVNGLLLAQRVGPDPSQPCLLLTDAMPLFHTSLALTPMLEVALNQVDLWSAANNQVIAGYYQANDQLTDHSPNLVATKIGDRVAEHMRGAVLIMLDNGKLSGEYGGPAVVVYERQDNRWTPKDKNLVMWRDWAGTRQALREMMAARAYRLLVDFDDHLDDIRRDWANGAI 194
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A2B4SL51_STYPI (ER membrane protein complex subunit 8 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SL51_STYPI)

HSP 1 Score: 117 bits (294), Expect = 3.420e-27
Identity = 65/187 (34.76%), Postives = 103/187 (55.08%), Query Frame = 2 
Query:   50 VSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTST-LAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSG--ETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            + V   AY K++LH +KYP  AVNG L+GE     G+I   DA+PLFH +  LAP+LE + + +D H    GL IVG+YQAN+ ++DN+P  +  KI +KI    +   +L+V + K L    + A   Y    N   +   ++ + G  +++      +  +    ++D D HLDD+++DW N  I
Sbjct:    3 IQVSPRAYAKILLHTSKYPHKAVNGVLVGEENLKEGEIYALDAIPLFHIALGLAPMLEVALARVDIHCKENGLQIVGYYQANEHINDNSPNAICYKIGEKICDHFNNGFMLMVDNTKLLVPCDEIACKCYVVQDNKWKQSDKDLVLDGGEDSLGLTTELIEAKTYQSLIDFDNHLDDITQDWLNKDI 189
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A5D6Y068_9STRA (MPN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y068_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.720e-27
Identity = 78/195 (40.00%), Postives = 110/195 (56.41%), Query Frame = 2 
Query:   41 SGGVSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQ-ICVKDAVPLFH-TSTLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAP-GTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSF-----RKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            S    VE  AYVK+MLHAAK+P  A  G LLGE     GQ   V DAVPLFH  + LAPLLE + +++DA+A +    +VGFY A+   D  A     + +  DK++ A    + +L+V +++L+ A  S V    +D    +     R  +E + +    Q F  AL Q   A++VD DEHL+DV+KDWRNP +
Sbjct:    2 SDSYRVEPAAYVKLMLHAAKHPAGACCGLLLGE---EQGQGFVVADAVPLFHHAAPLAPLLEAACAVVDAYAQAQRQRVVGFYYASDAGDGAASLAHFAERAADKVE-ANCSRACVLLVDSQQLQSAAKSGVQLLLKDVKRGWVRVDNRLRVEDSGARSAAQVFTRALEQNAFAELVDFDEHLEDVAKDWRNPHV 192
[Close]
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Match: A0A0R3SR86_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SR86_HYMDI)

HSP 1 Score: 116 bits (291), Expect = 7.930e-27
Identity = 67/185 (36.22%), Postives = 106/185 (57.30%), Query Frame = 2 
Query:   50 VSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVPLFHTS-TLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSKIMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAVSGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGI 601
            V +E  AY K++LHA+KYP  A+NG LLGE     G+  ++D VPLFH   TL P+LE + S I+++  +V L I G+YQAN+  + N    ++++I DKI     G   +++++N RL        + Y +  + S++K  ++ +        +  L++    + VD D HLDDVSKDWRN  +
Sbjct:    4 VHLESIAYAKILLHASKYPHLAINGVLLGEYDQ--GKFIIQDCVPLFHGCLTLVPMLEVALSQIESYCGTVNLKICGYYQANELANCNDINQIATRIGDKI-ADNIGFGNVIMLNNDRLTSLSSECFTLYCKKGD-SWQKGPKITIESSAADLLKPLLSEAGLEEFVDFDNHLDDVSKDWRNSNL 184
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMA2_ECTSI1.290e-9275.00COX4 neighbour n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A835YUA8_9STRA5.600e-3038.10COX4 neighbour n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI000A2A7D069.160e-3039.04ER membrane protein complex subunit 8 n=1 Tax=Exai... [more]
A7RMN9_NEMVE4.860e-2838.30Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A6P8Z1H3_THRPL6.380e-2838.46ER membrane protein complex subunit 8/9 homolog n=... [more]
A0A3M6UC68_POCDA2.410e-2739.01MPN domain-containing protein n=1 Tax=Pocillopora ... [more]
UPI0014031EA02.450e-2738.22ER membrane protein complex subunit 9 n=1 Tax=Ambl... [more]
A0A2B4SL51_STYPI3.420e-2734.76ER membrane protein complex subunit 8 n=1 Tax=Styl... [more]
A0A5D6Y068_9STRA6.720e-2740.00MPN domain-containing protein n=1 Tax=Pythium bras... [more]
A0A0R3SR86_HYMDI7.930e-2736.22Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:382482..387081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue2.1e-76
Seed eggNOG ortholog2880.D8LMA2
Preferred nameEMC8
KEGG rclassRC00204
KEGG koko:K01487
KEGG ReactionR01676
KEGG Pathwayko00230,ko01100,map00230,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0072546,GO:0098796,GO:0098827
EggNOG free text desc.Uncharacterised protein family (UPF0172)
EggNOG OGsKOG3289@1,KOG3289@2759
Ec32 ortholog descriptionCOX4 neighbour
Ec32 orthologEc-05_002070.1
EC3.5.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size1415
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.732546-UTR-C-linearis_contig81:382481..3825151622930603.732546-UTR-C-linearis_contig81:382481..382515Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 382482..382515 +
1690881155.2448359-UTR-C-linearis_contig81:382481..3825151690881155.2448359-UTR-C-linearis_contig81:382481..382515Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 382482..382515 +
1622930603.8557713-UTR-C-linearis_contig81:386279..3870811622930603.8557713-UTR-C-linearis_contig81:386279..387081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 386280..387081 +
1690881155.3210611-UTR-C-linearis_contig81:386279..3870811690881155.3210611-UTR-C-linearis_contig81:386279..387081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 386280..387081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.761621-CDS-C-linearis_contig81:382515..3826411622930603.761621-CDS-C-linearis_contig81:382515..382641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 382516..382641 +
1690881155.2670324-CDS-C-linearis_contig81:382515..3826411690881155.2670324-CDS-C-linearis_contig81:382515..382641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 382516..382641 +
1622930603.7802858-CDS-C-linearis_contig81:383933..3840591622930603.7802858-CDS-C-linearis_contig81:383933..384059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 383934..384059 +
1690881155.2767665-CDS-C-linearis_contig81:383933..3840591690881155.2767665-CDS-C-linearis_contig81:383933..384059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 383934..384059 +
1622930603.7988489-CDS-C-linearis_contig81:384894..3849981622930603.7988489-CDS-C-linearis_contig81:384894..384998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 384895..384998 +
1690881155.2866113-CDS-C-linearis_contig81:384894..3849981690881155.2866113-CDS-C-linearis_contig81:384894..384998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 384895..384998 +
1622930603.8134837-CDS-C-linearis_contig81:385411..3854961622930603.8134837-CDS-C-linearis_contig81:385411..385496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 385412..385496 +
1690881155.2961724-CDS-C-linearis_contig81:385411..3854961690881155.2961724-CDS-C-linearis_contig81:385411..385496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 385412..385496 +
1622930603.8287988-CDS-C-linearis_contig81:386141..3862791622930603.8287988-CDS-C-linearis_contig81:386141..386279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 386142..386279 +
1690881155.3086276-CDS-C-linearis_contig81:386141..3862791690881155.3086276-CDS-C-linearis_contig81:386141..386279Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 386142..386279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15954.1prot_C-linearis_contig81.15954.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 382516..386279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15954.1

>prot_C-linearis_contig81.15954.1 ID=prot_C-linearis_contig81.15954.1|Name=mRNA_C-linearis_contig81.15954.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp
MSSGGVSVEGPAYVKMMLHAAKYPWAAVNGFLLGEGGSPAGQICVKDAVP
LFHTSTLAPLLETSASMIDAHAASVGLSIVGFYQANQCLDDNAPGTLSSK
IMDKIDVARDGSSVLLVVSNKRLEIAGDSAVSAYGRDANNSFRKHLEVAV
SGETIQAFESALAQRVEAKVVDIDEHLDDVSKDWRNPGIASA*
back to top

mRNA from alignment at C-linearis_contig81:382482..387081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15954.1 ID=mRNA_C-linearis_contig81.15954.1|Name=mRNA_C-linearis_contig81.15954.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4600bp|location=Sequence derived from alignment at C-linearis_contig81:382482..387081+ (Chordaria linearis ClinC8C monoicous)
CTCTCTCCTATCTCCCTGCTGTTCTCTTCCAACCATGTCTAGCGGCGGTG
TATCTGTGGAGGGTCCGGCCTACGTGAAGATGATGCTTCATGCCGCCAAG
TACCCGTGGGCGGCGGTGAACGGCTTCTTGCTCGGCGAGGGCGGTTCTCC
AGCAGGGCAGGTGCGGAACTCGTGATGTTCCCAGCGGCAGTTTGTATTGC
TTGCGTGCTTCGAGCAGAGTACGGAAGCCCACGCCATGTTTTTTGCTTTG
AGCAGTGCACACCAATGGTGCCATAGGCCTTGCATGGATACACAGAGAAA
CAAGAGGGCAATTTTTTGCCAAGATCTCCGAAGACACACGCAGCAGTTCG
CAACACCGCCTGTTCAACACACAGCAAGTAGCTGCCAGCCCAGCCAACGC
GAGGGTAGAGGAAAGCACTCCCTCTCTCACGGCACGAAGTCACATAGCAG
AGATAAAACAGTTGATGTAACCCCCCGACACGGAAAACTTGATAAACAAG
AACTGCTGCTACATGGACGGAAGAGTGCCTGGTGCTAGGTGCACAGCCGA
CAATACTAGGGGGTTCATTAGATTATATATGGGTGTTTTTAAAGGGATGC
ACATCACCCGGTACCGGTGATCACCGGTACCAATGTTGGCGGGTGGGTAC
CATGGTTTTCCGGGGTGATTCCTGGAGAAATTCCGGGTCGATTCGGCGGT
GCCCCCTACCCCCCCCCCTCTGTATTACCATCAGTGGGGCCCCGCTCCCA
CGAGGTTGGTGCGTGGTGTTCGGTGCGCATGATATCTACCACATGGGAAA
GCTTCATAGTTCAATACTTCTTGAGCATGTTTTCTGTTTTCTGTGTCCTT
CTCTTTTTTTTTTCTTTTTGTCTTTGGTGTCACATATATGCTCGGCCGTT
CTCCTAGTCTGCACTGCACTTTACAACCCAGGCAGTAGCAGTAGCAGCTG
AGCACGATGGGGATCATAGAACATACAAAGGGGGACATATTGACAGCCAT
TTTACACATGAGTTTTCCCTCAGAAACACACAAAACACCAGCTCTGGGAC
ACGCCCATGTACAGCATGTCAAGACACAGGTTGAAACCCCGGGGATGGGG
AATTTTCATCCCCTGATCCAGCGGTGATCACCGGTGGGTGCATGGTTAAT
CTGCGGTGATGCATATCCCTGGTTTTTTATTCATTTTTTTAATTAATTAT
TTTTTGGTTTGGGGCAGAGAATATCGCGCTTTATCCACGTAAGACACGCA
GATGACGCCTGCTCCAGTCTCGTTTGAGCACGGGGGCAACGGGAGATAGC
TGCCGAGATGCCTTGCCTATTCGTGGGCGAGTGGGTTTTCCATGCACAAT
GTGACAAATGGTGGCCCATCTTTTCGATCTCTGTGGAACGCCTGCATTCA
AGTTTCTCGGCCCCGACACCCCTACGCATGACTGCTGCCCTGCCCTCGCC
AGATCTGTGTGAAGGATGCCGTGCCCCTGTTTCACACGTCGACGCTCGCC
CCCCTGCTGGAGACGTCGGCTTCCATGATAGATGCCCACGCCGCCAGCGT
CGGCCTCTCTATTGTAGGCTTTTATCAGGTGAGCGCGTGTACTACATGTG
TAGGCTTGCGTCCGAACCACTGGATTATGTAGTCTAGACGTAGCCGGTGG
CCTAGTGGTTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATT
TCAAGCAAAGGTGATTATTTTGCGACTTCGCCGGTGAAAGCGATGACATA
GCTGAAAAAGCTCGTGAGTACCAAACTTCGACTTAGCACGTTGACGAGAG
AAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCACCGCA
GGAGGAAGGCGGGGCAGAAAAGAAACAGAAAAAAGAAGAAAAAAGCCCCA
GTGTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTATCTAGTTACAGAA
CGAGACTAGTTAGTGCTGGGTACCTCCGGCGCTCAGCGTTGTTTTAGGTC
GTTTCTGCGCTCTGTGCGTGTGTGAAAGGGGGTTGGTTCGGTAGTCGTGG
TTGATCCCACGATCGTTTGCTCTGTTTTTGATGGTGTTGTAGTACCTGTT
GGTGCTGATGTTGGTGTTTTTGAGGTTGTCGCTGCTGTCGTTTTTTTTGT
CTACAACTGAGGTGTGCCGGGAGACAGAGCCTACCGGGGAGATGAGTCTA
ACGAGGGGGGTCGTTTCGGAGATCGTTCAGGCACAGCAGAGCACCTCTCA
TTTTAACTTGTAAATTGAAGGTTTTCATCTGCGCCACACTACTCCATGCT
GGTTCAGATCCCCACGTGGGACTCGCAATACAGGGACGATTCTCCCAAAT
TTAATATCTGTTGAGTGGATGGTGGTTTGGCGAAAGTTGTAACAGTCATG
TTTTTTTTCGCAGGCGAACCAGTGCCTAGACGACAACGCGCCAGGGACGC
TCTCCTCGAAAATTATGGACAAGATCGATGTGGCCCGGGACGGTTCGTCC
GTTCTTCTAGTGGTCAGGTGTGTGCCTGCCCTCAGCGGGGCGAACGAACT
CTCGCGTTGTTTTCTCCGCCCGCAGAAAGCCGACCTGCTTCGAGGTTGTC
CTGGCCTCCAAACTGCATCAGGCGGCTTCTGTTACACATGTAACTGGTGG
TTGGCCGATGGAAGATGAAGTTGCCGCGGGGTTTCTCACCCATCTGGAAT
TGTTTTGTCTTTTTTTTTCGTCCATGATGGTTCTGCCTGCCGACACATGT
GGCCCACACACGTGGTTTAGGCACTTGCTCCTAATACACCTGGTCTGGAG
GTATTATACCAACTTTGCAAGTACCAATCGCCGCGAATAGTGGCCACCTT
ACTTCCGTGTTCCTCGGAGTGATGTTCACCAATTTCGTTTTGTATGGGCT
GGGCACGTGTCCACCCTCACCTCGGAACAGCAACAAGAGGCTGGAGATCG
CGGGGGACAGCGCGGTGTCGGCATATGGGAGGGATGCCAACAACTCGTTC
CGGAAGCACCTGGAGGTATGCACATGTATTATCTTCTGTACAGAGTACTC
GCATATCTTCGGACGGTTGTTCCTGCGAAGCTAGCTCCCTTCTTCGTGGT
GTCTTGAACGAGAAGCTGGCGGGTTTCTGGAGAGGGACGGCGTGCTCATG
TGCAACTGCGTGGGCAAGGGTGTTTGCTTTTGGAAGATTATTTTCCGATC
TTGTTGAAGCTGGCACAGAGCAGTTCTGTCGCTCATGTTTTTCGTTGTCT
CGGAGGGTTGTCGTTTGGTATGTACCTGGCGCAATACACACGAGTCGCCA
ACCTTGTGGCCAGTCCAGCCGTATCAAGTTTATCCTTCCATTCTTCTGTG
TGTTAGACTACTGCCAGCGATGTTGGCGTTTGCGTTGTCCCTAAAGTACC
TACTTCGTATACACACGGTGTGGCACAATGACGCACAGCAATGCACAAAA
AGTATTTATATCTTCCAATTCCAGCTTTTGTCGCATCCCTCTCTTTGCGC
TACTTGAGTCTCATACAAAATATCCCTTCTCCTCCGGAGCAGTAGGCTGT
GTTCGGAAATATCAAGCATCATGTGTAGTCTATATCGACACTGAGACAGC
GGTGCGGTTGCCCAACGATCTATTTTCCATGCCTCTTTTTTGTGTTGTTC
GTTTTCCTAGGTTGCGGTGTCGGGGGAAACCATCCAAGCGTTCGAGTCCG
CTCTGGCCCAGAGGGTAGAGGCCAAGGTGGTGGACATAGACGAGCACCTG
GATGACGTCAGCAAGGACTGGAGAAATCCCGGCATCGCTTCCGCCTAGAT
GGGGGGCTGTTTGTCGCGTTGCTTTTTGGGGGGTGTATTTAATCGGAGGC
TTCACGTCCCTTGAAACCCGCTTGTGCTTTTTTGGGTGGGTTCGTGTTTG
TGTCTCCGTCGTTTTTTCGTGTGCCGCAGCTGTGGAAAAGTGTTCAGCCG
TGTTTTTGTTTGTGTTTTCGGGATGTGGCTGGCCTCGGTGACACGCCCTC
AACAGTTGGGCCGCGAAAACTTCGACCGCGCTTGGGTCGTCAGACCGTGC
CGACTAAGTAAGTTCGGTGGCTGTTTCACCCAATCCGTTCTTTTGGTGAG
AGGCTGTTGGACGAGTAGTTTTTCCTCCTGTTGGGGTCTGGCGCTGCTTT
CGGGTCGCCGTTCGCCGCTTTGTGTGGCAGCCTTTTTCTGGTGAACGGTG
TGGGTGATTACCTCGGTACTACAAAGCCGTTTCCAATGCCTACGCAATGA
AACGTAGCATGTCCGAAATATTTCCTTCCGATGCTCGAGGGGGTGAAGAA
CTAACTAAGCTTTGCGATCGTCTCGAGGGTCGCAATCTCGCGGTCGGCCG
GGAACTGTTGTTGATGTACACCCCGACTATTTCCTGTTTTCGAAGTGAGA
CCCGAACGAACGAACGTCCGGCCCTCTTTCTGCCGGAAAACAACCGAACC
GGAAATGGAGGACGCAAAACGTCGCGTCTTTTGGTTTGCGCGTTGCAGCC
TTGGGTTGATTGAGACCCTTAGCGGCGCCGACGTACGTATCATACAATAA
AGTTTTTTTTTCGTGAGCCAAGACGCCAGTAGTCTACGGCCCAACCTGTG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig81:382482..387081+

>mRNA_C-linearis_contig81.15954.1 ID=mRNA_C-linearis_contig81.15954.1|Name=mRNA_C-linearis_contig81.15954.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig81:382482..387081+ (Chordaria linearis ClinC8C monoicous)
ATGTCTAGCGGCGGTGTATCTGTGGAGGGTCCGGCCTACGTGAAGATGAT
GCTTCATGCCGCCAAGTACCCGTGGGCGGCGGTGAACGGCTTCTTGCTCG
GCGAGGGCGGTTCTCCAGCAGGGCAGATGTCTAGCGGCGGTGTATCTGTG
GAGGGTCCGGCCTACGTGAAGATGATGCTTCATGCCGCCAAGTACCCGTG
GGCGGCGGTGAACGGCTTCTTGCTCGGCGAGGGCGGTTCTCCAGCAGGGC
AGATCTGTGTGAAGGATGCCGTGCCCCTGTTTCACACGTCGACGCTCGCC
CCCCTGCTGGAGACGTCGGCTTCCATGATAGATGCCCACGCCGCCAGCGT
CGGCCTCTCTATTGTAGGCTTTTATCAGATCTGTGTGAAGGATGCCGTGC
CCCTGTTTCACACGTCGACGCTCGCCCCCCTGCTGGAGACGTCGGCTTCC
ATGATAGATGCCCACGCCGCCAGCGTCGGCCTCTCTATTGTAGGCTTTTA
TCAGGCGAACCAGTGCCTAGACGACAACGCGCCAGGGACGCTCTCCTCGA
AAATTATGGACAAGATCGATGTGGCCCGGGACGGTTCGTCCGTTCTTCTA
GTGGTCAGGCGAACCAGTGCCTAGACGACAACGCGCCAGGGACGCTCTCC
TCGAAAATTATGGACAAGATCGATGTGGCCCGGGACGGTTCGTCCGTTCT
TCTAGTGGTCAGCAACAAGAGGCTGGAGATCGCGGGGGACAGCGCGGTGT
CGGCATATGGGAGGGATGCCAACAACTCGTTCCGGAAGCACCTGGAGCAA
CAAGAGGCTGGAGATCGCGGGGGACAGCGCGGTGTCGGCATATGGGAGGG
ATGCCAACAACTCGTTCCGGAAGCACCTGGAGGTTGCGGTGTCGGGGGAA
ACCATCCAAGCGTTCGAGTCCGCTCTGGCCCAGAGGGTAGAGGCCAAGGT
GGTGGACATAGACGAGCACCTGGATGACGTCAGCAAGGACTGGAGAAATC
CCGGCATCGCTTCCGCCTAGGTTGCGGTGTCGGGGGAAACCATCCAAGCG
TTCGAGTCCGCTCTGGCCCAGAGGGTAGAGGCCAAGGTGGTGGACATAGA
CGAGCACCTGGATGACGTCAGCAAGGACTGGAGAAATCCCGGCATCGCTT
CCGCCTAG
back to top