mRNA_C-linearis_contig80.15897.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI) HSP 1 Score: 150 bits (378), Expect = 3.180e-40 Identity = 77/99 (77.78%), Postives = 80/99 (80.81%), Query Frame = 1
Query: 61 MPATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELR--QEXXXXXXXXXRGGAPVVVASPLVEAQA 351
M A VYEEVAL EM Y DSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLF+E +LPELR +E RGG PVVVAS LVEAQA
Sbjct: 1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEEKEEEHGHDSRGGEPVVVASTLVEAQA 99
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.340e-23 Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 67 ATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQ 270
+ VYEEVALA+MT++ +EQMY Y CPCGD FEISLEDL DGEDIAPCPSCTL+I+VL+ LP L+Q
Sbjct: 4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLYDMESLPPLQQ 71
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.320e-22 Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 28 HHAERAYRLREMPATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
H ER+ R +VY+EV + +M + EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F EG+LPEL++E
Sbjct: 16 HKGERSQRTM----SVYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEGELPELKEE 93
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.590e-22 Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 70 TVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQEXXXXXXXXXRGGAPVVVASPLVEAQA 351
+VYEEV L +M Y+++ M++Y+CPCGD FEISLE+L+DGEDIAPCPSC+L+I+VL++E DLP L + PVV A+P A A
Sbjct: 2 SVYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPALPTGANAPAERSSKPLPPVVAAAPEPAAVA 95
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.920e-21 Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 70 TVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
+VY+EV + +M + EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F E +LPEL++E
Sbjct: 2 SVYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEDELPELKEE 69
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD) HSP 1 Score: 97.4 bits (241), Expect = 3.590e-21 Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 70 TVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
+VY+EV + +M Y+ EQ+YYY CPCGDKF I+L++LYDGEDIA CPSC+L ++V+F+E DLPEL+ +
Sbjct: 2 SVYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEEDDLPELKDD 69
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP) HSP 1 Score: 97.1 bits (240), Expect = 5.350e-21 Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 67 ATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
A VY+EV + +M ++ EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F E LPEL++E
Sbjct: 2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEE 70
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.870e-21 Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 67 ATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
A VY+EV + +M ++ EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F E +LPEL++E
Sbjct: 2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDEENLPELKEE 70
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A7R9VMJ4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VMJ4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.970e-20 Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 70 TVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
++YEEV + ++ Y+ +EQ+Y Y CPCGDKF I+LE+L+DGEDIA CPSCTLQI V++ E DLPEL ++
Sbjct: 2 SIYEEVEIEDLDYDSTEQLYTYPCPCGDKFRITLEELWDGEDIARCPSCTLQIMVVYDEEDLPELTED 69
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.710e-20 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 70 TVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFKEGDLPELRQE 273
+VY+EV + +M ++++EQ+YYY CPCGDKF I L++LYDGEDIA CPSC+L I+++F E LP LR++
Sbjct: 2 SVYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLRED 69 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15897.1 >prot_C-linearis_contig80.15897.1 ID=prot_C-linearis_contig80.15897.1|Name=mRNA_C-linearis_contig80.15897.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=98bp MPATVYEEVALAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPback to top mRNA from alignment at C-linearis_contig80:537702..539815+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15897.1 ID=mRNA_C-linearis_contig80.15897.1|Name=mRNA_C-linearis_contig80.15897.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2114bp|location=Sequence derived from alignment at C-linearis_contig80:537702..539815+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:537702..539815+ >mRNA_C-linearis_contig80.15897.1 ID=mRNA_C-linearis_contig80.15897.1|Name=mRNA_C-linearis_contig80.15897.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at C-linearis_contig80:537702..539815+ (Chordaria linearis ClinC8C monoicous)back to top |