mRNA_C-linearis_contig80.15882.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI) HSP 1 Score: 285 bits (729), Expect = 4.900e-81 Identity = 149/310 (48.06%), Postives = 196/310 (63.23%), Query Frame = 2
Query: 311 TPWRPEGRDGWFSDRRASDGFDNIDGDPVFSAPLVISSDGFNFWSLGGKIFNVNATYMTLGCLSPTLPRRLRSWMLVCAGHKGR-WEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDAL--AKRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAPQFM 1231
TPWR +G GWF DRRAS N+ G PVFS L SSD FN++SL GK ++VNAT++ LGCLSP L RRLRSW L G G WE +V +M+ I+ L+ GC+A + D T VRMGLLTA LD+P H LW+N K N+KT + C C V +++LG+ Y N R+ DG+ + LA V + E E+ + S GVVVP NPL ++TFDRV G+D HQ AL K+++ F+L AL+ G +V GR M+PPN P+ DIT+ GG+AALTG Q+WL++SI P L PIF+ P +
Sbjct: 2 TPWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTITALVRMGLLTANLDSPMHSLWTNQKHHNAKTERACQACTVPRKDLGNPRYDIVKNARSADGLREDLALVASIEKRQEQLKMSRALGVVVPRYPNPLDEVTFDRVEGCGMDVLHQSALNAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLL 311
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI) HSP 1 Score: 179 bits (455), Expect = 4.160e-44 Identity = 90/214 (42.06%), Postives = 130/214 (60.75%), Query Frame = 2
Query: 587 METIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDAL--AKRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAP 1222
M+ I++L+ GC+A D T VR+GLLTA LD+P H LW+N K N+KT + C C V +++LG+ Y N RT DG+ + L+ V A E ++ + S GVVVP NP ++ FDRV G+D HQ AL K+++ F++ AL+ G +V R M+PPN P+ DIT+ GG++ALTG Q+WL++S P L PIF++P
Sbjct: 1 MKIIRRLQNGCKAEFSIGDKQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNPQDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSP 214
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE) HSP 1 Score: 182 bits (461), Expect = 5.820e-43 Identity = 116/305 (38.03%), Postives = 163/305 (53.44%), Query Frame = 2
Query: 314 PWRPEGRDGWFSDRRASDGFDNIDGDPVFSAPLVISSDGFNFWSLGGKIFNVNATYMTLGCLSPTLPRRLRSWMLVCAGH-KGRWEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKK-LTFDRVRMLGVDTFHQDALAK--RVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFA 1216
PWR EG G F D+RA+ + N G PVFS PLVI +D FNF+ GG +++NAT+ T+G + RRL SW L G + RWE+E+ GV TI +++ GCRA + DG VR G S T KPC+ C VTQ ELGD Y N R DGID +L+ V T ++G ST +GVV V NP+++ L + V+ +GVD HQD L R ++ ++ L+ G +A + + +EPL DI ++GG+A+ T + +W LA + LLF + A
Sbjct: 305 PWRFEGLYGLFFDKRAARVYFNKAGLPVFSIPLVIFTDAFNFFQRGGSPYSINATHFTIGSTTRAFRRRLESWDLCSLGAPRARWEQELDGVFGTIGKMQNGCRARV-CIDGEPV---VRSG---------------------SGTFKPCNVCNVTQDELGDGQYDIAGNARMMDGIDHSLSLVRKEATKTKQGIVSTREGVVGAFVRNPVREHLHLNPVKSIGVDIMHQDPLNSFGRAMKAMVDGLSPAGRTWLAALVKDPSLRISGSEPLKDIVSEGGWASQTASDLWRLAEVSTLLFRGVLA 584
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.490e-30 Identity = 84/246 (34.15%), Postives = 119/246 (48.37%), Query Frame = 2
Query: 665 VRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVD---------------------TFHQDALA-------------------------------KRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAPQFMLRALG 1246
VR+GLLTA LD+P H LW+N K N+KT C C V +++LG+ Y N RT DG+ + L V A E ++ + S GVVVP NPL ++ DRV G+D T +D +A K+++ F++ AL+ G +V R M+PPN P+ DIT+ GG +ALTG Q+WL+ASI P L PIF++P ++ G
Sbjct: 24 VRLGLLTANLDSPMHSLWANQKHHNAKTT--CQACVVPRRDLGNPKYDIVKNARTADGLKEDLDRVAATEKKQDRVKLSRALGVVVPRYPNPLHEVAIDRVDGCGMDGTQMPQVHIGRVADLVSQFSYTHKRDHIALLICSQNEQSDARITSQAACALTGESALNSGKKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSSPDNLVSTAG 267
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 124 bits (311), Expect = 4.630e-25 Identity = 88/315 (27.94%), Postives = 145/315 (46.03%), Query Frame = 2
Query: 314 PWRPEGRDGWFSDRRASDGFDNIDGDP-VFSAPLVISSDGFNFWSLGGKIFNVNATYMT-LGCLSPTLPRRLRSWMLV-CAGHKGRWEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKK-LTFDRVRMLGVDTFHQDALAK--RVIRFLLQALNR-DGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAPQFMLR 1237
PWRPEG + F DRR + N D + VF P + +D F+F + GG + + AT ++ S R+ +W LV + + RW++++G ++E I L+KGCRA + +D +++L D Y N RT D + AL + T ++ S++ GV +VENP +K + + VR G+D FHQDA ++ + LL L++ G+ L++ + PL D +DGG++AL+G +W L+S+ L+F P+ + M R
Sbjct: 397 PWRPEGAERLFYDRRQNGSHWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSPFASTSQAFRRQPGAWPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIAD-------------------------------------------KVEEDLADGNYDIVRNRRTDDQTEYALKVISTATTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDVFHQDAQNSLLKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRSVASMKR 668
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI) HSP 1 Score: 118 bits (296), Expect = 1.960e-24 Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 2
Query: 824 RTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDAL--AKRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAPQFM 1231
R DG+ + LA V + + E + S GVVVP NPL ++TFDRV G+D HQ AL K+++ F+L AL+ G +V GR M+PPN P+ DIT+ GG+AALTG Q+WL++SI P L PIF+ P +
Sbjct: 69 RAFDGLREDLALVASIKKKQEHLKMSRALGVVVPRYPNPLDEVTFDRVEGCGMDVLHQSALNAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLL 206
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.120e-22 Identity = 84/307 (27.36%), Postives = 122/307 (39.74%), Query Frame = 2
Query: 305 VQTPWRPEGRDGWFSDRRASDGFDNIDGDPVFSAPLVISSDGFNFWSLGGKIFNVNATYMTLGCLSPTLPRRLRSWMLVCAGHKGR-WEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDALAKRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAP 1222
PW +G G F D+RAS N+ G PV SA + SSD FN++SL G+ ++VNAT++ GC+SPTL RR R W L G G WE ++ +M+ I++L+ GC+A E S GT+ TV + MG F++ AL+ G +V R M+P N P+ DIT+ GG++ALTG Q+W+++SI P L P+F++P
Sbjct: 486 AMAPWTKQGYHGRFFDQRASGVHKNLAGLPVISAGIACSSDDFNYFSLSGRKYSVNATFVGCGCMSPTLLRRPRPWYLATLGLPGAAWELDILPLMKIIRRLQNGCKA--EISVGTKLTVTI-MG--------------------------------------------------------------------------------------------------------------------FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSSP 673
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.160e-18 Identity = 60/174 (34.48%), Postives = 89/174 (51.15%), Query Frame = 2
Query: 707 HKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDAL--AKRVIRFLLQALNRDGLALVAGRLGMAGMIPPNAEPLGDITTDGGYAALTGNQIWLLASIVPLLFGPIFAAP 1222
H LW+N K N+KT + C C V +++LG+ Y + ++ + S GVVVP NPL ++ FDRV G+D HQ AL K+++ F++ AL+ P +E + DIT+ GG +ALTG Q+WL++SIVP L PIF++P
Sbjct: 2 HSLWANQKHHNAKTERACQACVVPRRDLGNPKY-----------------------DIKDREKLSRALGVVVPRYPNPLDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALD-----------------PAGSEIVPDITSAGGRSALTGQQLWLVSSIVPFLLAPIFSSP 135
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.640e-18 Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 2
Query: 554 KGRWEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMGLLTAMLDTPYHKLWSNTKSSNSKTNKPCSTCEVTQQELGDNLYYFESNMRTQDGIDDALAYVDAGETVAEKGRRSTEKGVVVPDVENPLKKLTFDRVRMLGVDTFHQDALA 1009
K R +++V V E Q E + G V VR GL +LD+P H +NTK++N T + C C+V ++ LG+ Y N RT +G+D + YV G T E+ R+ ++GVVVP V NPLKKLTFDR + D H D+LA
Sbjct: 427 KRRRDQDVESVWEVTNQ---------EENVGVSALVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSLA 569
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.020e-14 Identity = 52/121 (42.98%), Postives = 69/121 (57.02%), Query Frame = 2
Query: 317 WRPEGRDGWFSDRRASDGFDNIDGDPVFSAPLVISSDGFNFWSLGGKIFNVNATYMTLGCLSPTLPRRLRSWMLVCAGH-KGRWEEEVGGVMETIQQLEKGCRATMETSDGTRFTVFVRMG 676
WR G D F DRRA F N PVFS PLVI +D FNF+ G F+VNAT+ ++G + + RRL SW L G + RWEEE+ + + I +++ GCRA + D T + VR G
Sbjct: 339 WRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRLSSWHLSNLGAPRARWEEELEHLFKIIGKMQNGCRARLRIGDKT---ITVRKG 456 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15882.1 >prot_C-linearis_contig80.15882.1 ID=prot_C-linearis_contig80.15882.1|Name=mRNA_C-linearis_contig80.15882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=467bp MTLGCLSPTLPRRLRSWMLVCAGHKGRWEEEVGGVMETIQQLEKGCRATMback to top mRNA from alignment at C-linearis_contig80:420449..428076- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15882.1 ID=mRNA_C-linearis_contig80.15882.1|Name=mRNA_C-linearis_contig80.15882.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7628bp|location=Sequence derived from alignment at C-linearis_contig80:420449..428076- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:420449..428076- >mRNA_C-linearis_contig80.15882.1 ID=mRNA_C-linearis_contig80.15882.1|Name=mRNA_C-linearis_contig80.15882.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2802bp|location=Sequence derived from alignment at C-linearis_contig80:420449..428076- (Chordaria linearis ClinC8C monoicous)back to top |