mRNA_C-linearis_contig80.15848.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI) HSP 1 Score: 1497 bits (3875), Expect = 0.000e+0 Identity = 969/1380 (70.22%), Postives = 1027/1380 (74.42%), Query Frame = 1
Query: 145 PGLDGQKPK-KGEKAPPSRKNKAWGKSKAKNKDDDGSGAGGARSGLKPVRIKLDKEGRDVILDVLHKLHVAGAGDGADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRGEDFAGRQGHGDFEYDGSFGDMANLTSDLVVNEEALPAVADEGARTASAGPAKSGSASKKSPPKTGAKERQEQEQVKNPLLGXXXXXXXXXXSKGAA---RSNVTREKLLASMVQEDRKTSRETQKGIGAVPSAAIHAASTVGGGAVSGAVARGYQRPDPPGAGKGNDKVRLGVCGENKKTGAPDLNGKKILVFDRKDPIQKVLNTSCRKLHIKKKAKGAALLEDEEVAEWLSDLSWVPNGSVVLISCAGAPGSKATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALALAALGRIRESYRTRAKEWQSAATGRARS-DASDPEAGKRMLDKRREVESTAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKG-------------GERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXX----------RDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSRVFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPDRQSKT-RQVKKAHFVTRDDSEPVFMHPSSVNHQRFANAAESGRQ 4197
PG +G +PK KG KAP SRKNKAWGKSKAKNKD D G GLKPVR+KLD+EGRD ILD+LHKLHVAGA D A+D XXXXXXXXXXXX XXXXXXXXXX + RQ HGDFEYDGSFGDMANL S LVVN+ A A +A A SA P KERQ XXXXXXXXXX RSNVTREKLLASMVQEDRKTS++ + G V SAAIHAASTVGGG VSGAVARGYQRPDPPGAGKGNDKVRL VCGE+KKTGAPDLNGKKILVFDRK+P+ LNT KLHIKKKAKGAAL+E EEV +WLSDLSWVPNG+VVLISC G+ T XXXXXXXXXXXXXXXXXXXXX XXXXXX A+ALAALGRIRE+YR RA+E QS A G AR D SD EAGKRM+DKRREVESTAQSRQMM QR+ LPAYLQREDIV+TIRDNQVVVLSGETGCGKTTQVPQFVLDD IDQG+GGKCNIICTQPRRISAVGVA RVASERCE+VGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSH+MVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQA DLFTKYFHDCP+IT+PGRTFPVE+TYMD+VNR++RG +TPA+MPRVSS AG V GRG+GR GA A P E DD T AYDPLT EPLEL D A VSPKCEDKVDYD+MVDLVDHIM+TEG+G XXXXXXXXX XXXX RDDRQ XXXXXXXXWXXXXXXX A G EPLGAILIFLPGFAEIDQLVKAL+RHPRIGRG+RVFPLHSSLP++QQ+SIFQRMP GVRKIVVSTNIAETS+TIDDCTHVIDAGRVREMRYDP+TRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQ++MP HTLAEMLRTPLEELVLQ+LLLELGSPAEFLDRAVEPPPPKMLRAALRNL DLQAIIIS STPILTPLGYHLAHLP+DACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRT+SYD VRRWCRE FLS PTLE SGPGL+DPD+NSGN LVQSVLVAGLYPHVAAFVRPDR S+T RQ+KK HFVTRDDSEPVFMHPSSVNH+RFA+AAESGRQ
Sbjct: 29 PGPEGIEPKNKGNKAP-SRKNKAWGKSKAKNKDGDDDNTRGG--GLKPVRLKLDEEGRDAILDILHKLHVAGAEDSAEDETDGSXXXXXXXXXXXXEAGGXXXXXXXXXXGSDADV--------EIDDRQDHGDFEYDGSFGDMANLMSGLVVNDSAP-------AESAVFMEASKSSAGNSLPMPGATKERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNVTREKLLASMVQEDRKTSKQAPREAGGVSSAAIHAASTVGGGPVSGAVARGYQRPDPPGAGKGNDKVRLEVCGESKKTGAPDLNGKKILVFDRKEPLLGFLNTCRGKLHIKKKAKGAALVEGEEVVDWLSDLSWVPNGAVVLISCTS--GAGGTKEKAPVATXXXXXXXXXXXXXXXXXXXXXSKHDGGEISAAPPEAGGEGERQXXXXXXXAVALAALGRIRETYRARARERQSGAAGHARGGDVSDKEAGKRMMDKRREVESTAQSRQMMAQRRNLPAYLQREDIVKTIRDNQVVVLSGETGCGKTTQVPQFVLDDLIDQGEGGKCNIICTQPRRISAVGVADRVASERCERVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHVMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQA----DLFTKYFHDCPAITVPGRTFPVEVTYMDEVNRLVRGTRTPAIMPRVSSGAGVVGGRGHGRXXXGALAD-----------PXXXXXXXXXXXXXXXXXXXXXSEADDGETPAAYDPLTGEPLELGEDDGATSAAAAAS-AMVSPKCEDKVDYDVMVDLVDHIMRTEGDGGSRXXXXXXXXXQNIFSNRXXXXXXXXXXXXXXRDDRQ-------RGGVXXXXXXXXWXXXXXXXXXXXAG-GNSGETEPLGAILIFLPGFAEIDQLVKALQRHPRIGRGARVFPLHSSLPSNQQKSIFQRMPAGVRKIVVSTNIAETSVTIDDCTHVIDAGRVREMRYDPLTRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQSYMPTHTLAEMLRTPLEELVLQVLLLELGSPAEFLDRAVEPPPPKMLRAALRNLDDLQAIIISNSTPILTPLGYHLAHLPMDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTSSYDEVRRWCREKFLSQPTLE---------------------------------------------------------------------------SGPGLQDPDLNSGNTALVQSVLVAGLYPHVAAFVRPDRHSRTPRQIKKGHFVTRDDSEPVFMHPSSVNHERFASAAESGRQ 1289
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: K8ZAB1_NANGC (Helicase domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAB1_NANGC) HSP 1 Score: 550 bits (1417), Expect = 5.180e-172 Identity = 340/787 (43.20%), Postives = 459/787 (58.32%), Query Frame = 1
Query: 1471 IRESYRTRAKEWQSAATGRARSDAS--DPEAGKRMLDKRRE-VESTAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXAS----VSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSRV--FPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPI------LTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGF 3786
I+E YR RA + AA G+ R + S + EA RML +R E V T R+M+ R+ LP + RE++V + +N V+VLSG TG GK+TQVPQF+LD +I+ G G + NI+ TQPRRISA+ + RVA+ERC +VG VGY IRL++RV ST LTF TTG+LLRRL D L GVSH+++DEVHERD+ +DFLL+I+++LL +R L+++LMSATLQA DLF +YF +CP++ +PGRTFPV +++D+ L K+ +P +S GRG G R G G E +L + +SPK ED +DY ++V L+ ++ R D +E GA+L+F GF EI++L K + H +G RV +PLHSSLP+ QR++F+RMP GV KIVV+TNIAETS+TIDD + VID+GRV+EMRYD T MS LV VW S+A+ SQRAGRAGRVR G C+RLY ++F + MP +TL EMLRTPLEEL L IL LELGSPA+FL RA+EPPPP+ + A++NL ++ A+ K L PLG+HLA+LP DA +GK+L+I +IL CL+PILTIAA LS K+PF PFG Q AD+A + SDH+A +EA+ W R Y + +C ENFLS TLE++++LR++ R+QL ++GF
Sbjct: 63 IKEGYRVRAI--RRAAGGKKRHERSPAESEALSRMLKQRLERVMETRGYREMLWARERLPIWSMREEVVRLVEENTVIVLSGATGSGKSTQVPQFLLDHYIEGGRGSQVNILVTQPRRISAISLCERVAAERCVEVGRDVGYSIRLEARVSDSTALTFVTTGLLLRRLQEDPDLQGVSHVVIDEVHERDIHSDFLLIIMQELLERRKGLKLILMSATLQA----DLFQEYFGNCPAVHVPGRTFPVRHVFLEDIEAKLASVKS---VPGMSQGGVGGNGRGGGXRGXGR-----------------------GXXXXXXXXXXXXXXXKEHRQLSNGSLKGIGNENGNGVAGPPLISPKAEDPIDYQLIVKLLTLLV-----------------------------------------------------------------TIREAD-DNEVGGAVLVFFSGFQEINELCKLMAAHAVLGNPKRVQAYPLHSSLPSDAQRAVFRRMPKGVTKIVVATNIAETSITIDDISSVIDSGRVKEMRYDAETHMSSLVSVWTSQAAASQRAGRAGRVREGTCFRLYSKSFMEAQMPKYTLPEMLRTPLEELSLTILALELGSPADFLARAIEPPPPEAISTAVKNLREIDALRKQKDLDTKEVSYYLMPLGFHLANLPCDARIGKMLIIGSILGCLEPILTIAACLSYKSPFSNPFGMQQEADRAHAKYGSALSDHIAALEAYNGWAELR-NEPYRVRKDYCTENFLSIATLEQIEALRKELRRQLIDIGF 750
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: W7TVU1_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVU1_9STRA) HSP 1 Score: 561 bits (1445), Expect = 3.050e-170 Identity = 376/939 (40.04%), Postives = 516/939 (54.95%), Query Frame = 1
Query: 1471 IRESYRTRAKEWQSAATGRARSDAS--DPEAGKRMLDKRRE-VESTAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXAS----VSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSRV--FPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPI------LTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGT------------GDTNGRWRRGGGEGPGKVAAVAWEGEDGGS----GPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPDRQSKTRQVKKAHFVTRDDSEPVFMHPSSVNHQRFANAAESGR 4194
I+E YR RA + AA G+ R + S + EA RML +R E V T R+M+ R+ LP + RE++V + +N V+VLSG TG GK+TQVPQF+LD +I+ G G + NI+ TQPRRISA+ + RVA+ERC +VG VGY IRL++RV ST LTF TTG+LLRRL D L GVSH+++DEVHERD+ +DFLL+I+++LL +R L+++LMSATLQA DLF +YF +CP++ +PGRTFPV +++D+ L K+ +P +S GRG G R G G E +L + +SPK ED +DY ++V L+ ++ R D +E GA+L+F GF EI++L K + H +G RV +PLHSSLP+ QR++F+RMP GV KIVV+TNIAETS+TIDD + VID+GRV+EMRYD T MS LV VW S+A+ SQRAGRAGRVR G C+RLY ++F + MP +TL EMLRTPLEEL L IL LELGSPA+FL RA+EPPPP+ + A++NL ++ A+ K L PLG+HLA+LP DA +GK+L+I +IL CL+PILTIAA LS K+PF PFG Q AD+A + SDH+A +EA+ W R Y + +C ENFLS TLE++++LR++ R+QL ++GF + P + GR AA + G + + + R + EDG + G G + + ++ L++ L A LYP V VRP + + A F RD ++ V +HP S+N R N A SG+
Sbjct: 290 IKEGYRVRAI--RRAAGGKKRHERSPAESEALSRMLKQRLERVMETRGYREMLWARERLPIWSMREEVVRLVEENTVIVLSGATGSGKSTQVPQFLLDHYIEGGRGSQVNILVTQPRRISAISLCERVAAERCVEVGRDVGYSIRLEARVSDSTALTFVTTGLLLRRLQEDPDLQGVSHVVIDEVHERDIHSDFLLIIMQELLERRKGLKLILMSATLQA----DLFQEYFGNCPAVHVPGRTFPVRHVFLEDIEAKLASVKS---VPGMSQGGVGGNGRGGGXRGXGR-----------------------GXXXXXXXXXXXXXXXKEHRQLSNGSLKGIGNENGNGVAGPPLISPKAEDPIDYQLIVKLLTLLV-----------------------------------------------------------------TIREAD-DNEVGGAVLVFFSGFQEINELCKLMAAHAVLGNPKRVQAYPLHSSLPSDAQRAVFRRMPKGVTKIVVATNIAETSITIDDISSVIDSGRVKEMRYDAETHMSSLVSVWTSQAAASQRAGRAGRVREGTCFRLYSKSFMEAQMPKYTLPEMLRTPLEELSLTILALELGSPADFLARAIEPPPPEAISTAVKNLREIDALRKQKDLDTKEVSYYLMPLGFHLANLPCDARIGKMLIIGSILGCLEPILTIAACLSYKSPFSNPFGMQQEADRAHAKYGSALSDHIAALEAYNGWAELR-NEPYRVRKDYCTENFLSIATLEQIEALRKELRRQLIDIGFGAG-EPRKMYGGGRGAAGRAGQPGXXXXXXXXXXXXXXXRSNDDEKCRDNQSHKSARAVRAGANDEDGHTVDDIGGGSDGKGTPALDVNLIRCCLFAALYPQVGKLVRPQKTGEG-----ATFELRDKTK-VAVHPGSINFTRLMNLAPSGK 1122
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: W7T633_9STRA (Putative atp-dependent rna helicase dhx36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T633_9STRA) HSP 1 Score: 549 bits (1415), Expect = 9.210e-166 Identity = 353/874 (40.39%), Postives = 480/874 (54.92%), Query Frame = 1
Query: 1624 QRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVL---RGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQAST---GGRGPGGRGHPAAAGAAKGGERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSR--VFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTP------ILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRR--WCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPDRQSKTRQVKKAHFVTRDDSEPVFMHPSSVNHQRFANAAESGRQ 4197
QR LPA+ QRE I+E + +QVVV+ GETG GKTTQ+PQF+LDD+ +G GG+CNI+CTQPRRISA+GVA RVA ER EKVG TVGY +R ++R P TRL FCTTG+LLRRL D LAGVSH++VDEVHER L++DFLL++L+DLL RP+L+VVLMSATLQA LF+ YF + P + IPGR F V Y+DDV ++ RG P PR S RAG RG R G A+ S+ G P H A KG E +D + E ++ + +P +DY+++ L +++ G+ +++ G GA+LIFLPG +EI++ ++ +++ + R +F LHSS+P QR+IF++M GV KIVV+TNIAETS+T+ D THVID GR ++ YDP T M+ L EVW S+AS QRAGRAGRVR G C+RLY E+F Q+ M PH E+ R LE L+L ILLLELG P FL RAVEPP PK ++A+L+ L D++A+ + P +L PLG+HLA LPVD +GK+L+ A++ C+DPILTIAAA S ++PF P G++ A A+Q FA+ KSDHLA+V + AW+ R D R + + NF+S LE +D+ R + L + GFA A A+ + A+ D D N + +L++ +L+ GL P +A VRP R + AHF+T+D + V +HPSSVN +R + A G +
Sbjct: 417 QRASLPAFSQREAILEAVAAHQVVVVEGETGSGKTTQLPQFILDDWSARGKGGECNIVCTQPRRISAIGVAERVAEERLEKVGETVGYSVRFNTRRSPQTRLLFCTTGVLLRRLAYDKDLAGVSHVLVDEVHERTLESDFLLIVLKDLLACRPELKVVLMSATLQA----SLFSSYFDNSPCLHIPGRAFQVSQLYLDDVEELVAGRRGPGRPRAAPRAS-RAGSHFARGRTDRGGMARKSSEPCDGE-PLSHSHTARNSTGKGEETEDG----------QDGDETLKEDFGAEGARQLRMSFSTPSDRVAIDYELIAKLTRRLVEDFGD------------------------KNEEDGG-----------------------------------------GAVLIFLPGLSEIERSIRTMKQDALLSDKKRACIFALHSSMPTEAQRAIFRKMEAGVCKIVVATNIAETSITVTDVTHVIDTGREKQTGYDPYTHMTSLREVWTSQASAKQRAGRAGRVRPGICYRLYTESFMQDNMAPHAPPEIRRVLLENLILTILLLELGPPEAFLQRAVEPPSPKAVKASLQVLLDIEAVALGPPLPNGSRAIVLNPLGFHLASLPVDCRLGKMLVFASLFACVDPILTIAAAFSSRSPFVAPIGKREEAQLAKQRFAEDKSDHLALVALWKAWK---RVKDGDTTARKAFAKANFVSIAALEEIDATRSKLYDDLVKCGFAPCATAESQSATK-------------------------------SLQAI--------------DYDSNENDKRLLRCILLCGLTPQIAKLVRPTRG------RGAHFITKDPTLDVAIHPSSVNAKRISQAGSDGNE 1155
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: A0A835Z4K1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K1_9STRA) HSP 1 Score: 490 bits (1262), Expect = 7.990e-147 Identity = 397/1097 (36.19%), Postives = 530/1097 (48.31%), Query Frame = 1
Query: 1000 DKVRLGVCGENKKTGAPDLNGKKILVFDRKDPIQKVLNTSCRKLHIKKKAKGAALLEDEEVAEWLSDLSWVPNGSVVLISCAGAPGSKATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALALAALGRIRESYR--TRAKEWQSAATGRARSDASDPEAGKRMLDKRREVESTAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVL---RGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPT-TMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPL-GAILIFLPGFAEIDQLVKALERHPRIGRGSRVFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKST--PILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGE--QARADKARQGFAQGK-SDHLAIVEAFGAWRNK-RRTNSYDG----VRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPDR-----QSKTRQV--------KKAHFVTRDDSEPVFMHPSSVNHQRFANAAE-SGRQ 4197
+ VR+ VC E KK G P++ K++V R P+ + + + KL IKKK K L+++ V +WL+DLS V + + +S GA +K XXXXXXXXXXXXXXXXXX ++ AA+ R++ SY+ + +++ Q AA + A + + + E +A+ +QMM QRQ LP Y RE+++E I +NQVVV+ GETG TVGY+IRL+SR +TRLTFCTTG+LLRRLT+D L G++H++VDEVHER L+TDFLL+IL+DLLP+RPDL+VVLMSATLQA LFT YF DCP + +PGRTFPV +++D+ + + GG++ + RDD + +DP+T + L G VSP+C+DK+D D + +LV HI+ E G R G + + AA G+G GAIL+F+PG EI++LV L + R+ F LHS+L QQR++FQ MPPG RK+VVSTNIAETS+TI+DCTH FH MP HTL EMLR PLEELVLQ L+LE+G PA L RAV+PPP KML AALRNLY+L+A+ ++ T LTPLGYHLAHLP+DA VGKLL++ A+L+CLDP+LT+AAALS K PF RP G +A A R+ FA G SD LA+V A+ AW + RR NS G ++ WCR+NF++ + + LREQFR+ L GFAS D AA S+ ++GN++L+QSVL AGLYP VA FVRP +S+ R V ++AHF RDD E F+HP S+N +R+ AE SGRQ
Sbjct: 54 EPVRVMVCSE-KKDGVPNVGDSKLVVLQRSAPLGEAMAKAQGKLRIKKKPKALGLVQEGVVVQWLNDLSLVRDDDTLCLSSLGAGKAKTV-------------APRAAPPXXXXXXXXXXXXXXXXXXGDGDAQTLEGTGSGEASIHAEVSNAAIDRLKASYQKLSISRQGQKAAVSAEQVAALSRQLSQAAASR----EGSARHQQMMQQRQSLPVYNFREELLELIDENQVVVVEGETG-----------------------------------------------------TVGYRIRLESRASAATRLTFCTTGVLLRRLTTDGGLDGITHVLVDEVHERGLETDFLLIILKDLLPRRPDLKVVLMSATLQA----SLFTDYFGDCPCLKVPGRTFPVTTLHLEDIGKAIGRPMGGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP--------------------PRDDGTEGAVVFDPITGQQLS----GAEARAAGGSQAPLVSPQCQDKLDLDEIAELVAHIVDCESRGTDVTG---------------------RSGAK-----------------------GGKPRAAWGGEGGXXXXXGAILVFMPGTLEINRLVSMLRQDRRLSNCCEAFALHSALSPDQQRAVFQVMPPGRRKVVVSTNIAETSITIEDCTH-----------------------------------------------------FHATAMPEHTLPEMLRCPLEELVLQTLILEIGDPASVLARAVQPPPEKMLHAALRNLYELEAVQVAPDTLETSLTPLGYHLAHLPMDARVGKLLIMGALLRCLDPVLTVAAALSSKTPFVRPMGSAAEAAATDVRKRFAGGNCSDSLAVVAAYKAWDAECRRVNSSSGTCPRMKMWCRDNFINSNAMALMAGLREQFREHLVAAGFASV-----------DRAADSA----------------------------------------------HAGNVRLLQSVLCAGLYPQVAWFVRPKANGSAGESRWRVVGGSAAVGTQRAHFALRDDPEAAFVHPGSINAERYRGQAEASGRQ 897
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: C1FF88_MICCC (RNA helicase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF88_MICCC) HSP 1 Score: 486 bits (1250), Expect = 1.120e-146 Identity = 337/861 (39.14%), Postives = 448/861 (52.03%), Query Frame = 1
Query: 1624 QRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGG---TVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNG-RRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPTTMA-YDPLTVEPLE----LDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRI----GRGSRVFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLEL-GSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPDRQSKTRQVKKAHFVTRDDSEPVF-MHPSSVNH 4161
QR+ LPA+ +RE+++E +R NQVV+++GETGCGKTTQ+PQF+LDD I + +GG+C++ICTQPRRISA VA RVA ER EK+G TVGY+IRL+S STR+ F TTG+LLRRL D LAGVSH++VDEVHER L +DFLLV+LRD+LP RP LRVVLMSATL A F YF TIPG T PV+ Y++D+ +V G V RG+ RN + T G +RD D T A + P E L R G S +DYD++ LV+H+ S EP GAIL+F+PG AEI +L ++L +P + G G + LHS+L +QR+IF+ P RKIV++TNIAETS+TIDD +V+D+G+ +E YDP TRM L+E W+S+AS QR GRAGRVR G+C+R+Y H HT+ E+ R PLE L LQI L + G A FL +A+EPP +++A++ L + A+ ++ LT LG HLA LPVD VGK+LL A+L CL P+LTIAA L ++PF P ++ AD A++ FA+ +SDHL + AF AW + R + R+NFLS TLE + LR QF Q L E GF G RW R G P P D + NS N +LV++VLVAGLYP++ P + S K H+++ + E + +HPSSVN+
Sbjct: 68 QRKRLPAWSKREELLEAVRANQVVIVAGETGCGKTTQLPQFILDDAIARNEGGRCSLICTQPRRISATSVASRVAQERGEKLGAKGTTVGYKIRLESVASESTRILFVTTGVLLRRLAEDPLLAGVSHVIVDEVHERSLDSDFLLVLLRDVLPHRPTLRVVLMSATLNAAA----FGAYFAGAAVATIPGFTHPVQEHYLEDILQV----------------TGYVPDRGSDCMRNSKGNSGT-----------------NGDKRDGDKTAGASHRPHPAREAEFIAALSRRGYLPSVCDALRAIDQSV-----IDYDLVTRLVEHVCA-----------------------------------------------------------------------SMEP-GAILVFMPGLAEISKLHESLGTNPTVRAATGNGKYLIGLHSTLSTAEQRTIFEHPPGDTRKIVIATNIAETSITIDDVVYVVDSGKCKENGYDPNTRMQLLLERWVSRASAKQRRGRAGRVRPGRCFRVYTRQMHDEVFDEHTMPEIKRVPLEGLCLQIQLQRMSGGIAGFLGKALEPPEEDSIKSAIKTLRQIGALDEKEN---LTSLGQHLASLPVDVRVGKMLLYGAVLGCLGPVLTIAAVLGGRSPFVAPLDKREDADAAKRMFAEDQSDHLTNLNAFNAWLDARALGK-GAEMAFTRDNFLSFRTLEGIADLRAQFAQLLHEAGF---------------------------LGTDGKRWGRRGAPPP--------------DDPIWLDANRNSNNTRLVKAVLVAGLYPNLVKVGTPHKPSAP---PKLHYLSDEGKEEMLQVHPSSVNY 766
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: A0A061S817_9CHLO (RNA helicase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S817_9CHLO) HSP 1 Score: 484 bits (1247), Expect = 4.120e-146 Identity = 330/868 (38.02%), Postives = 457/868 (52.65%), Query Frame = 1
Query: 1594 STAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSR--VFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQG-KSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGED------GGSGPGLEDP----DMNSGNLKLVQSVLVAGLYPHVAAFVRPDRQSKTRQVKKAHFVTRDDSEPVFMHPSSVN 4158
ST + ++M R+ LPA+ ++ ++V + +QVVV+SGETGCGKTTQ+PQF+L++ I G G C IICTQPRRISA+ VA RVA ER E++G VGYQIRL+SR TRL FCT+G++LRRL D L GVSHI+VDE+HER + DFLL+ILRDLLP+RPDLRVVLMSATL A DLF YF CP + IPG TFPVE +++D + R P P S GR G + + GGRG R AA GG T+ + V E + + K + K+D D++ +V HI + +EP GAIL+F+ G+ +I +L L+ P G SR + PLH S+P Q++IF R P GVRK+++STNIAETS+TIDD +V++ G+ +E YDP+ ++ L+ W SKA+ QR GRAGRV+AGKC+ L P A H + H E+LRTPLEEL LQI L LG FL RA++PP K + A+ L+ + A+ + LTPLG HLAHLPVD +GK++++ AI CL+P+L IAA ++ + PF P ++A AD+ ++ FA G +SDH+AI+ AF WR + R +C +FL+ T++ + + QF L ++GF S H +S TGD+ ++GE+ GS L+ N N +L+++VL AG++P VA+ R + + F TR+D + V HPSSVN
Sbjct: 68 STPKVQRMAEFRKKLPAFGKKAELVAAVASSQVVVVSGETGCGKTTQLPQFILEEEIAAGRGAACGIICTQPRRISAISVAQRVADERGEELGRMVGYQIRLESRRSDDTRLLFCTSGVVLRRLAGDPLLRGVSHIVVDEIHERGMNEDFLLIILRDLLPRRPDLRVVLMSATLNA----DLFCGYFGGCPRLHIPGFTFPVEELFLEDFLDLTRHEIAP---PDQSG----------GRGGGPSSRARGGRG---RLREAAPPQDPGGG------TLGW----VFRAEDYPNAHPSTCRSLAAWQQANSKGDAKLDLDLVAAVVTHICR------------------------------------------------------------------------NEPEGAILVFMTGWDDISKLHDQLKARPLTGDPSRCLLLPLHGSMPTVNQQAIFSRPPQGVRKVILSTNIAETSITIDDIVYVVNGGKTKEKNYDPLNNLATLLPAWTSKAAARQRRGRAGRVQAGKCFHLLPRAMHDRHLLDHQEPELLRTPLEELCLQIKALRLGRVEAFLGRALQPPDQKAVHNAVDLLFTIGALSGDEE---LTPLGEHLAHLPVDPRIGKMMIMGAIFGCLEPVLIIAAGMAHRDPFVLPLEKKAEADRMKKDFAAGSRSDHIAILHAFQGWRRAFEAGGFSAARNYCWRSFLAPNTMQMMQEMVLQFAYLLDDIGFLSGGAHRGHLSSA--------------TGDSG-----------------EYDGEEQHPRQKSGSRDSLKTRIASLSKNQSNTELLRAVLCAGMFPAVASIKRRGKFNV--------FNTREDGK-VEPHPSSVN 790
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: UPI0010A98998 (putative ATP-dependent RNA helicase DHX57 n=1 Tax=Antrostomus carolinensis TaxID=279965 RepID=UPI0010A98998) HSP 1 Score: 479 bits (1232), Expect = 2.580e-144 Identity = 328/869 (37.74%), Postives = 476/869 (54.78%), Query Frame = 1
Query: 1615 MMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGE---RDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHP----RIGRGSRVFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEF---LDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPD---RQSKTRQVK------KAHFVTRDDSEPVFMHPSSVNHQ 4164
M+ +RQ LPA+ +RE I++ ++ +QV+V+SG TGCGKTTQ+PQF+LD + G NIICTQPRRISA+ VA RVA ER E++G TVGYQIRL+S +TRL +CTTG+LLRRL D TL G++H++VDEVHER ++DFLL++L+D++ +RPDLR++LMSATL A +LF++YFH CP I IPGRTFPV+ +++DV + R + R ++ + NGR A AG +G + RD DP LT++ L G ++S DKV+ +++ L++ I+ AG S P GA+LIFLPG AEI L + L+ + R + V+PLHSSL + +Q+S+F R P GV KI++STNIAETS+TIDD +VID+G+++E RYDP M L + ++SKA+ QR GRAGRV +G C+ L+ + + + L E+ R PLE+L L+I +LE+ S L + +EPP + L+A+ L DL A+ + LTPLGYHLA LPVD +GKL+L I +CLDP LTIAA+L+ K+PF P+ ++ A+K + FA G SD+LA+++A+ WR + S +CRENFLS L+ + SL+ QF + L+++GF + +R D +W +GG G + A E+ + N+ N+KL+ ++L A LYP+V +P+ +++ T VK + FVT++D V +HPSSVN+Q
Sbjct: 72 MLYERQKLPAWQERETILDLLKSHQVLVVSGMTGCGKTTQIPQFILDASLQGSPSGVANIICTQPRRISAISVAERVAKERTERIGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDLTLQGITHVIVDEVHERTEESDFLLLVLKDIMVQRPDLRIILMSATLNA----ELFSQYFHSCPIINIPGRTFPVDQFFLEDVIAMTRYVLEDSSPYRRKTKQ---ENKQNGRHKRTAFEEV-------EEDLRRAGILEGTDTVVRDSDPDQK----LTLKQLLTRYKGVNKTVLK-----TMSVMDLDKVNLELIEALLEWIV--------------------------------------------------------------------AGKHSYPP-GAVLIFLPGLAEIKMLYEQLQSNALFNNRHSKRCVVYPLHSSLSSEEQQSVFLRPPAGVIKIIISTNIAETSVTIDDVVYVIDSGKMKEKRYDPSKGMESLEDTFVSKANALQRKGRAGRVASGVCFHLFSSHHYNHQLIKQQLPEIQRVPLEQLCLRIKILEMFSAQSLHSVLSQLIEPPRTESLQASKLRLQDLGALTPDEK---LTPLGYHLASLPVDVRIGKLMLFGTIFRCLDPALTIAASLAFKSPFVSPWDKREEANKKKLEFAVGNSDYLALLQAYKGWRLSIKEGSQASYN-YCRENFLSGRVLQEIASLKRQFTELLSDIGFVKEGLRAR---------------------DIEKKWSQGG---DGVLDATG------------EEANSNAENIKLISAMLCAALYPNVVQVKKPEGKYQKTSTGAVKMQPKAEELKFVTKNDG-CVHIHPSSVNYQ 807
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: UPI001403E682 (putative ATP-dependent RNA helicase DHX57 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403E682) HSP 1 Score: 492 bits (1266), Expect = 7.360e-143 Identity = 336/895 (37.54%), Postives = 484/895 (54.08%), Query Frame = 1
Query: 1582 REVESTAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDV----NRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGE-----RDDDPTTMAYDPLTVEP---------LELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIG--RGSR--VFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEF---LDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGKSDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSAVPSRHRASGRDAAAGSSSGGVGGTGDTNGRWRRGGGEGPGKVAAVAWEGEDGGSGPGLEDPDMNSGNLKLVQSVLVAGLYPHVAAFVRPD---RQSKTRQVK------KAHFVTRDDSEPVFMHPSSVNHQ 4164
RE S Q + M+ +R LPA+ +RE I+E ++ +QV+V+SG TGCGKTTQVPQFVLD + CN++CTQPRRISA+ VA RVA ER E++G +VGYQIRL+S +TRL +CTTG+LLRRL D L GV+H++VDEVHER ++DFLL++L+DL+ +R DLRVVLMSATL A+ LF++Y + CP + IPGRTFPV+ +++D+ ++ G +P + P V R GP G+G G GA GGR RG KGG +D ++ P P L + + +++ +K++ D++ +L++ I+ EG D GA+LIF+PGFAEI L + L+ +P RG+R + PLHSSL + +Q+++F+ P GV KI++STNIAETS+TIDD +VID G+++E RYD M L E W+SKA+ QR GRAGRV +G C+ L+ ++ + L E+ R PLE+L L+I +L+L + R +EPP P+ L AA++ L DL A+ +S LTPLGYHLA LPVD +GKL+L AI +CLDPILTIAA+L+ K+PF P+ ++ A+ + FA+ KSDHL +++A+ W R ++G +CRENFLS TL+ + SL+ QF + L+++GF + +R + A G DG + + N+ NLKLV ++L A LYP+V P+ +Q+ T ++ + F+T+ D PV +HPSSVN Q
Sbjct: 643 REKMSNRQYQAMLQERGKLPAWEERELILELLQLHQVLVVSGMTGCGKTTQVPQFVLDASLQGSPANVCNLVCTQPRRISAISVAERVARERAERLGASVGYQIRLESVQSSATRLLYCTTGVLLRRLEGDPMLQGVTHVLVDEVHERTEESDFLLMVLKDLIAQRSDLRVVLMSATLNAQ----LFSEYLYGCPVVHIPGRTFPVDQYFLEDIIDLTGYIIEHG-SPFMRPAV--RGGPDGGKGKGASAIGA----GGR----RG--------KGGGFMEQLEEDLLRSLILSPRNAVPVKEKAPDQTLSIQQLHSRYIECRMTTIKTLAAMDLEKINLDLIEELLEWIL--EGK-------------------------------------------------------------------HDYKAGAVLIFMPGFAEIKTLFEKLQTNPMFNNRRGNRALLLPLHSSLSSEEQQAVFKAAPEGVIKIIISTNIAETSITIDDVVYVIDCGKMKEKRYDAGKGMESLEETWVSKANAVQRRGRAGRVASGACFHLFTSHRFEHLLDEQQLPEIQRVPLEQLCLRIKMLDLFKDRQLDSVFSRLIEPPAPESLTAAIQRLRDLGALTEKES---LTPLGYHLASLPVDVRIGKLVLFGAIFRCLDPILTIAASLAFKSPFVSPWDKRQEANAKKLEFAEAKSDHLTLLKAYKGWLGAMRDRIHEG-HHFCRENFLSWRTLQEISSLKRQFAELLSDIGFVREGLRARD------------------------------------MERAARHGGDGVLETTGSESNSNADNLKLVGAMLCAALYPNVVQVTVPEGKFQQTSTGAMRMPSKSEELRFITKSDG-PVHIHPSSVNFQ 1404
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Match: A0A6I9R4I4_ELAGV (RNA helicase n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R4I4_ELAGV) HSP 1 Score: 478 bits (1231), Expect = 1.790e-142 Identity = 299/738 (40.51%), Postives = 413/738 (55.96%), Query Frame = 1
Query: 1594 STAQSRQMMTQRQGLPAYLQREDIVETIRDNQVVVLSGETGCGKTTQVPQFVLDDFIDQGDGGKCNIICTQPRRISAVGVAGRVASERCEKVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHIMVDEVHERDLQTDFLLVILRDLLPKRPDLRVVLMSATLQARIIADLFTKYFHDCPSITIPGRTFPVEITYMDDVNRVLRGGKTPAVMPRVSSRAGPVVGRGNGRRNGGAQASTGGRGPGGRGHPAAAGAAKGGERDDDPTTMAYDPLTVEPLELDRDGXXXXXXXXXXXASVSPKCEDKVDYDIMVDLVDHIMKTEGNGXXXXXXXXXXXXXXXXXXXXXXXRDDRQGQRRXXXXXXXXXXXXXXXWXXXXXXXSRGEAARAGDGSDEPLGAILIFLPGFAEIDQLVKALERHPRIGRGSR--VFPLHSSLPAHQQRSIFQRMPPGVRKIVVSTNIAETSLTIDDCTHVIDAGRVREMRYDPITRMSCLVEVWISKASGSQRAGRAGRVRAGKCWRLYPEAFHQNFMPPHTLAEMLRTPLEELVLQILLLELGSPAEFLDRAVEPPPPKMLRAALRNLYDLQAIIISKSTPILTPLGYHLAHLPVDACVGKLLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQARADKARQGFAQGK-SDHLAIVEAFGAWRNKRRTNSYDGVRRWCRENFLSHPTLERLDSLREQFRQQLAEVGFASSA 3798
+T +R M + R+ LPA+ +++ ++ + DNQV+V+SGETGCGKTTQ+PQF+L++ I++ G KCNIICTQPRRISA+ VA R+ASER E +G TVGYQIRL+++ TRL FCTTG+LLRRL + L GVSH++VDE+HER + DFL++ILRDLLP+RPDLR++LMSAT+ A +LF+ YF + P I IPG T+PV +++DV R R+ S G RR P+T DPLT E E D DI ++ M T + W EA E GAIL+FL G+ EI +L+ ++ + +G SR V PLH S+P QR IF R P VRKIV++TNIAE+S+TIDD +VID G+ +E YD + +++CL+ WISKAS QR GRAGRV+ G C+RLYP+ H + MP + L E+LRTPL+EL L I L+LG+ A FL +A++PP P ++ AL L + A+ + LTPLG HL LP+D +GK+LLI ++ QCLDP LTIAAAL+ + PF P + AD A++ FA SDH+A+++AF AW++ +R+ R +C ENFLS TL+ ++ +R QF L+++GF + A
Sbjct: 241 ATPSARVMQSFREKLPAFKVKDEFLKAVADNQVLVVSGETGCGKTTQLPQFILEEEIERLQGAKCNIICTQPRRISAISVAARIASERGENLGETVGYQIRLEAKRSAQTRLLFCTTGVLLRRLVQEPDLGGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSATINA----ELFSTYFGNAPIIHIPGLTYPVAEVFLEDVVEKTRY--------RIKSEFDNFQGNSRRRRR-------------------------------QPSTK-NDPLT-EMFE---------------------------DVDIDAQYKNYSMSTRQS---------------------------------------------LEAWDGTQLDLGLVEATIEYICRHEKDGAILVFLTGWDEISKLLDKIKGNNFLGNSSRFLVLPLHGSMPTVNQREIFDRPPSNVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKVIH-DAMPQYQLPEILRTPLQELCLNIKSLQLGAVATFLAKALQPPDPLSVKNALELLKTIGALDEMEE---LTPLGCHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEAWKDAKRSGK---ERAFCWENFLSPMTLQMMEDMRNQFLDLLSDIGFVNKA 854 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15848.1 >prot_C-linearis_contig80.15848.1 ID=prot_C-linearis_contig80.15848.1|Name=mRNA_C-linearis_contig80.15848.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1527bp MAPKKNKEGKKNPASRSSEKKKAKPGLDGQKPKKGEKAPPSRKNKAWGKSback to top mRNA from alignment at C-linearis_contig80:135774..150272+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15848.1 ID=mRNA_C-linearis_contig80.15848.1|Name=mRNA_C-linearis_contig80.15848.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14499bp|location=Sequence derived from alignment at C-linearis_contig80:135774..150272+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:135774..150272+ >mRNA_C-linearis_contig80.15848.1 ID=mRNA_C-linearis_contig80.15848.1|Name=mRNA_C-linearis_contig80.15848.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9162bp|location=Sequence derived from alignment at C-linearis_contig80:135774..150272+ (Chordaria linearis ClinC8C monoicous)back to top |